Wall clock time and date at job start Tue Mar 31 2020 16:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30530 * 1 3 3 Si 1.86799 * 120.00347 * 2 1 4 4 H 1.48503 * 109.47095 * 272.95720 * 3 2 1 5 5 H 1.48497 * 109.47040 * 32.95401 * 3 2 1 6 6 H 1.48497 * 109.47061 * 152.95763 * 3 2 1 7 7 C 1.40438 * 119.99945 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99875 * 347.52301 * 7 2 1 9 9 C 1.40162 * 120.00379 * 167.52076 * 7 2 1 10 10 C 1.39429 * 120.04651 * 152.67868 * 9 7 2 11 11 C 1.41142 * 118.86107 * 179.72650 * 10 9 7 12 12 N 1.33884 * 120.54115 * 179.97438 * 11 10 9 13 13 C 1.34140 * 120.00212 * 185.44173 * 12 11 10 14 14 N 1.31433 * 120.00311 * 60.71683 * 13 12 11 15 15 S 1.76203 * 120.00125 * 240.71456 * 13 12 11 16 16 C 1.80999 * 100.00231 * 180.02562 * 15 13 12 17 17 C 1.52998 * 109.47117 * 180.02562 * 16 15 13 18 18 S 1.81396 * 109.46937 * 179.97438 * 17 16 15 19 19 O 1.42095 * 110.54324 * 291.61876 * 18 17 16 20 20 O 1.42101 * 110.54510 * 68.37324 * 18 17 16 21 21 O 1.52208 * 104.44816 * 179.97438 * 18 17 16 22 22 C 1.41838 * 118.92217 * 359.97438 * 11 10 9 23 23 C 1.34775 * 120.00416 * 359.97438 * 22 11 10 24 24 N 1.36094 * 121.19083 * 0.02562 * 23 22 11 25 25 H 0.96996 * 119.44829 * 180.02562 * 24 23 22 26 26 H 0.97005 * 119.99969 * 0.02562 * 1 2 3 27 27 H 1.07998 * 120.57114 * 359.69887 * 10 9 7 28 28 H 0.96990 * 120.00007 * 180.02562 * 14 13 12 29 29 H 1.09009 * 109.46823 * 300.00065 * 16 15 13 30 30 H 1.08993 * 109.47152 * 59.99638 * 16 15 13 31 31 H 1.09000 * 109.46926 * 299.99850 * 17 16 15 32 32 H 1.08993 * 109.47676 * 59.99627 * 17 16 15 33 33 H 0.96701 * 113.99998 * 179.97438 * 21 18 17 34 34 H 1.08001 * 120.00002 * 180.02562 * 22 11 10 35 35 H 1.07998 * 119.40840 * 180.02562 * 23 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3053 0.0000 0.0000 3 14 2.2394 1.6177 0.0000 4 1 2.4244 2.0825 -1.3982 5 1 1.4695 2.6338 0.7616 6 1 3.5668 1.4228 0.6365 7 6 2.0075 -1.2162 0.0005 8 1 1.4866 -2.1404 0.2030 9 6 3.3843 -1.2308 -0.2617 10 6 4.1846 -2.2439 0.2648 11 6 5.5670 -2.2375 -0.0200 12 7 6.3667 -3.1936 0.4686 13 6 7.6931 -3.1181 0.2833 14 7 8.3664 -2.0957 0.7616 15 16 8.5329 -4.3897 -0.6012 16 6 10.2275 -3.7585 -0.5261 17 6 11.1649 -4.7261 -1.2513 18 16 12.8631 -4.0930 -1.1766 19 8 12.9907 -2.9142 -1.9598 20 8 13.3565 -4.1448 0.1550 21 8 13.6887 -5.1313 -1.9229 22 6 6.0952 -1.2016 -0.8322 23 6 5.2803 -0.2447 -1.3188 24 7 3.9470 -0.2486 -1.0457 25 1 3.3837 0.4523 -1.4095 26 1 -0.4850 0.8401 -0.0004 27 1 3.7542 -3.0199 0.8804 28 1 9.3253 -2.0409 0.6272 29 1 10.2727 -2.7808 -1.0062 30 1 10.5350 -3.6662 0.5155 31 1 11.1197 -5.7038 -0.7716 32 1 10.8572 -4.8180 -2.2929 33 1 14.6326 -4.9258 -1.9669 34 1 7.1504 -1.1800 -1.0614 35 1 5.6927 0.5392 -1.9366 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168092913.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:57 Heat of formation + Delta-G solvation = -82.676447 kcal Electronic energy + Delta-G solvation = -22512.293548 eV Core-core repulsion = 18763.408285 eV Total energy + Delta-G solvation = -3748.885264 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.12314 -39.23457 -38.32188 -38.04304 -37.18089 -35.86075 -34.90403 -33.81900 -32.91039 -30.78753 -28.16244 -25.74400 -24.77846 -23.59133 -21.97012 -21.49090 -20.10788 -19.46632 -19.24248 -18.64181 -18.39742 -17.72940 -17.52602 -17.03399 -16.60902 -16.22647 -16.06421 -15.51495 -15.30180 -15.15273 -14.94882 -14.33326 -14.13314 -14.10035 -13.43026 -13.39609 -13.34198 -13.23621 -13.21885 -13.12809 -13.03490 -12.79685 -12.63447 -12.33361 -12.09471 -11.63567 -11.58594 -11.44644 -10.25626 -10.07123 -9.74888 -9.20279 -8.98237 -8.16388 -6.94325 -0.94465 0.11902 0.59808 0.65181 1.07435 1.22973 1.26306 1.34213 1.52403 1.68535 1.86774 2.20161 2.50257 2.55505 3.15021 3.21604 3.23484 3.57336 3.93023 3.99326 4.21700 4.22295 4.48151 4.57328 4.59673 4.60076 4.75634 5.06368 5.26123 5.31867 5.62797 5.72648 5.92085 5.98509 6.09273 6.51030 6.60935 7.21837 7.72701 7.86111 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.034828 B = 0.002273 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.755735 B =12316.263617 C =12705.392848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.047 3.953 3 Si 0.930 3.070 4 H -0.211 1.211 5 H -0.261 1.261 6 H -0.252 1.252 7 C -0.451 4.451 8 H 0.090 0.910 9 C 0.306 3.694 10 C -0.346 4.346 11 C 0.315 3.685 12 N -0.678 5.678 13 C 0.419 3.581 14 N -0.789 5.789 15 S -0.201 6.201 16 C -0.106 4.106 17 C -0.594 4.594 18 S 2.686 3.314 19 O -0.996 6.996 20 O -0.999 6.999 21 O -0.886 6.886 22 C -0.279 4.279 23 C 0.149 3.851 24 N -0.609 5.609 25 H 0.408 0.592 26 H 0.310 0.690 27 H 0.106 0.894 28 H 0.324 0.676 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.165 0.835 32 H 0.167 0.833 33 H 0.479 0.521 34 H 0.131 0.869 35 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.188 0.266 -9.231 19.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.176 4.176 3 Si 0.749 3.251 4 H -0.135 1.135 5 H -0.186 1.186 6 H -0.176 1.176 7 C -0.483 4.483 8 H 0.108 0.892 9 C 0.197 3.803 10 C -0.375 4.375 11 C 0.171 3.829 12 N -0.415 5.415 13 C 0.026 3.974 14 N -0.427 5.427 15 S 0.025 5.975 16 C -0.257 4.257 17 C -0.723 4.723 18 S 2.776 3.224 19 O -0.995 6.995 20 O -0.998 6.998 21 O -0.760 6.760 22 C -0.307 4.307 23 C 0.021 3.979 24 N -0.223 5.223 25 H 0.250 0.750 26 H 0.122 0.878 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.127 0.873 30 H 0.122 0.878 31 H 0.183 0.817 32 H 0.185 0.815 33 H 0.353 0.647 34 H 0.149 0.851 35 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 16.355 -0.486 -8.687 18.525 hybrid contribution 0.802 1.199 0.276 1.469 sum 17.157 0.713 -8.412 19.122 Atomic orbital electron populations 1.69463 1.09197 1.33265 1.29693 1.27029 0.95907 1.04119 0.90562 0.86047 0.80081 0.76380 0.82607 1.13485 1.18585 1.17585 1.19449 0.90323 0.97063 1.41480 0.89243 1.17754 0.91614 0.84967 0.86009 1.20329 0.91240 1.07692 1.18283 1.18961 0.92686 0.85303 0.85942 1.68621 0.99724 1.32820 1.40380 1.24908 0.95604 0.88626 0.88226 1.70636 1.13889 1.25351 1.32795 1.86333 1.03300 1.38761 1.69144 1.23210 0.95084 1.02260 1.05127 1.30058 1.19107 1.10937 1.12181 1.02331 0.76628 0.71342 0.72050 1.93617 1.85631 1.49966 1.70283 1.93619 1.77686 1.85921 1.42536 1.85371 1.35960 1.70188 1.84439 1.21393 1.00603 0.99975 1.08735 1.22174 0.82083 0.98479 0.95205 1.42521 1.08443 1.26954 1.44431 0.74976 0.87755 0.87581 0.86015 0.87291 0.87809 0.81736 0.81529 0.64711 0.85112 0.77496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -33.82 13.91 21.91 0.30 -33.52 16 2 C 0.05 1.92 5.49 85.42 0.47 2.39 16 3 Si 0.93 28.54 24.60 68.60 1.69 30.22 16 4 H -0.21 -4.95 6.86 99.48 0.68 -4.27 16 5 H -0.26 -7.88 7.11 99.48 0.71 -7.17 16 6 H -0.25 -8.41 6.80 99.48 0.68 -7.73 16 7 C -0.45 -20.44 9.62 23.27 0.22 -20.21 16 8 H 0.09 4.50 8.06 -2.91 -0.02 4.48 16 9 C 0.31 13.11 5.89 38.98 0.23 13.34 16 10 C -0.35 -16.58 9.81 23.27 0.23 -16.35 16 11 C 0.32 14.87 6.56 40.43 0.27 15.13 16 12 N -0.68 -33.72 10.51 -189.15 -1.99 -35.70 16 13 C 0.42 18.30 6.34 180.27 1.14 19.44 16 14 N -0.79 -33.15 12.82 -58.22 -0.75 -33.89 16 15 S -0.20 -6.92 22.27 -56.49 -1.26 -8.17 16 16 C -0.11 -2.55 4.32 71.98 0.31 -2.24 16 17 C -0.59 -8.82 6.17 71.98 0.44 -8.37 16 18 S 2.69 35.99 5.67 -56.49 -0.32 35.67 16 19 O -1.00 -20.15 18.09 -118.57 -2.15 -22.30 16 20 O -1.00 -20.82 18.09 -118.57 -2.15 -22.97 16 21 O -0.89 -6.02 13.27 -118.07 -1.57 -7.59 16 22 C -0.28 -10.82 8.92 22.37 0.20 -10.62 16 23 C 0.15 4.54 11.15 83.24 0.93 5.47 16 24 N -0.61 -20.80 3.69 -187.94 -0.69 -21.49 16 25 H 0.41 11.78 4.44 -92.71 -0.41 11.37 16 26 H 0.31 11.46 8.29 -92.70 -0.77 10.69 16 27 H 0.11 5.40 8.06 -2.91 -0.02 5.38 16 28 H 0.32 11.46 6.05 -92.72 -0.56 10.90 16 29 H 0.11 2.43 7.67 -2.39 -0.02 2.41 16 30 H 0.10 2.44 7.68 -2.40 -0.02 2.42 16 31 H 0.16 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.17 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.48 -1.16 9.03 -87.93 -0.79 -1.95 16 34 H 0.13 4.95 6.47 -2.91 -0.02 4.93 16 35 H 0.21 3.74 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -77.72 328.06 -5.06 -82.79 By element: Atomic # 1 Polarization: 39.59 SS G_CDS: -0.63 Total: 38.96 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 4.44 Total: -2.01 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -3.12 Total: -124.61 kcal Atomic # 8 Polarization: -47.00 SS G_CDS: -5.86 Total: -52.85 kcal Atomic # 14 Polarization: 28.54 SS G_CDS: 1.69 Total: 30.22 kcal Atomic # 16 Polarization: 29.08 SS G_CDS: -1.58 Total: 27.50 kcal Total: -77.72 -5.06 -82.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168092913.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -77.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds