Wall clock time and date at job start Tue Mar 31 2020 17:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.18719 * 2 1 4 4 O 1.44152 * 110.12588 * 121.83539 * 2 1 3 5 5 C 1.44020 * 104.85605 * 147.56020 * 4 2 1 6 6 C 1.50761 * 105.92824 * 331.67133 * 5 4 2 7 7 C 1.38388 * 107.48275 * 17.48764 * 6 5 4 8 8 N 1.32119 * 119.24130 * 180.02562 * 7 6 5 9 9 C 1.32097 * 120.70097 * 359.97176 * 8 7 6 10 10 Cl 1.73592 * 119.00849 * 179.97438 * 9 8 7 11 11 N 1.31876 * 121.97857 * 0.02562 * 9 8 7 12 12 C 1.33194 * 120.71217 * 0.02562 * 11 9 8 13 13 N 1.38745 * 120.69170 * 180.02562 * 12 11 9 14 14 C 1.38448 * 119.99942 * 355.63256 * 13 12 11 15 15 C 1.38947 * 120.00043 * 58.07060 * 14 13 12 16 16 H 1.07995 * 119.99727 * 203.80090 * 15 14 13 17 17 C 1.40858 * 119.99910 * 23.79653 * 15 14 13 18 18 N 1.30323 * 120.00060 * 7.10238 * 17 15 14 19 19 Si 1.86799 * 119.99879 * 187.10189 * 17 15 14 20 20 H 1.48505 * 109.47112 * 90.00099 * 19 17 15 21 21 H 1.48499 * 109.47222 * 209.99712 * 19 17 15 22 22 H 1.48493 * 109.47354 * 329.99900 * 19 17 15 23 23 C 1.41130 * 120.00088 * 238.06447 * 14 13 12 24 24 C 1.43196 * 119.99942 * 185.42615 * 23 14 13 25 25 N 9.38011 * 123.65295 * 207.34141 * 2 1 3 26 26 C 1.43196 * 119.99815 * 5.43364 * 23 14 13 27 27 N 6.91351 * 113.13841 * 179.46296 * 2 1 3 28 28 H 1.09000 * 109.47499 * 181.71664 * 1 2 3 29 29 H 1.09010 * 109.46913 * 301.71740 * 1 2 3 30 30 H 1.09003 * 109.47289 * 61.71059 * 1 2 3 31 31 H 1.09002 * 110.15835 * 212.55868 * 5 4 2 32 32 H 1.08996 * 110.21949 * 90.82045 * 5 4 2 33 33 H 0.96999 * 120.00276 * 175.63215 * 13 12 11 34 34 H 0.96999 * 119.99541 * 184.99967 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9061 1.0231 0.0000 4 8 2.0260 -0.7139 1.1499 5 6 3.2561 -1.3180 0.7071 6 6 3.0979 -1.5398 -0.7757 7 6 2.0498 -0.7449 -1.2054 8 7 1.7088 -0.7610 -2.4818 9 6 2.3569 -1.5243 -3.3434 10 17 1.8715 -1.5118 -5.0101 11 7 3.3608 -2.2961 -2.9753 12 6 3.7604 -2.3331 -1.7053 13 7 4.8170 -3.1448 -1.3186 14 6 5.4092 -3.9947 -2.2372 15 6 5.9634 -3.4803 -3.4029 16 1 6.0728 -4.1110 -4.2728 17 6 6.3824 -2.1363 -3.4502 18 7 6.3797 -1.4145 -2.3651 19 14 6.9418 -1.3887 -5.0680 20 1 5.7757 -0.7903 -5.7663 21 1 7.9540 -0.3350 -4.8026 22 1 7.5404 -2.4464 -5.9213 23 6 5.4500 -5.3835 -1.9896 24 6 6.1629 -6.2490 -2.8803 25 7 6.7281 -6.9358 -3.5862 26 6 4.7785 -5.9272 -0.8476 27 7 4.2467 -6.3571 0.0596 28 1 -0.3634 -1.0272 0.0308 29 1 -0.3633 0.5403 0.8743 30 1 -0.3634 0.4870 -0.9049 31 1 3.4113 -2.2699 1.2149 32 1 4.0949 -0.6490 0.8995 33 1 5.1409 -3.1170 -0.4047 34 1 6.5984 -0.4705 -2.4102 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080470.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:24 Heat of formation + Delta-G solvation = 57.575269 kcal Electronic energy + Delta-G solvation = -25438.990990 eV Core-core repulsion = 21590.992591 eV Total energy + Delta-G solvation = -3847.998399 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.72509 -39.99675 -39.13219 -37.83380 -37.13301 -36.56884 -35.56566 -34.26924 -33.23993 -32.32869 -31.14291 -28.83112 -27.25924 -25.98715 -24.23768 -23.23005 -22.30735 -20.87935 -19.48010 -19.20934 -18.38071 -17.91213 -17.66403 -17.17983 -16.57819 -16.42476 -15.97220 -15.35070 -15.23284 -15.00780 -14.62937 -14.41188 -14.29431 -13.94030 -13.58612 -13.51779 -13.42554 -13.27342 -13.17440 -13.07059 -12.97487 -12.75211 -12.72578 -12.57568 -12.48357 -12.34349 -12.00718 -11.94666 -11.55665 -11.28932 -10.56010 -10.33533 -9.95893 -9.43627 -8.76214 -7.14313 -0.30805 0.04268 0.31645 0.67566 1.32228 1.42940 1.50205 1.96654 2.03725 2.07553 2.20992 2.47684 2.57107 2.60863 2.66904 2.80445 3.19160 3.37486 3.51810 3.74796 3.94994 4.10617 4.17457 4.26852 4.46086 4.57059 4.60141 4.64328 4.82948 4.84834 4.97137 5.26208 5.34759 5.49971 5.57794 5.64969 5.98840 6.10599 6.47992 6.58381 7.04987 7.15095 7.32213 7.64223 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.009826 B = 0.005981 C = 0.004730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.942896 B = 4680.627549 C = 5917.886049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.134 3.866 3 H 0.124 0.876 4 O -0.357 6.357 5 C 0.117 3.883 6 C -0.312 4.312 7 C 0.172 3.828 8 N -0.537 5.537 9 C 0.392 3.608 10 Cl 0.030 6.970 11 N -0.548 5.548 12 C 0.503 3.497 13 N -0.614 5.614 14 C 0.368 3.632 15 C -0.339 4.339 16 H 0.101 0.899 17 C 0.061 3.939 18 N -0.729 5.729 19 Si 0.961 3.039 20 H -0.254 1.254 21 H -0.254 1.254 22 H -0.254 1.254 23 C -0.321 4.321 24 C 0.330 3.670 25 N -0.555 5.555 26 C 0.314 3.686 27 N -0.552 5.552 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.420 0.580 34 H 0.312 0.688 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.696 14.872 1.444 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.075 3.925 3 H 0.142 0.858 4 O -0.276 6.276 5 C 0.040 3.960 6 C -0.324 4.324 7 C 0.027 3.973 8 N -0.260 5.260 9 C 0.097 3.903 10 Cl 0.058 6.942 11 N -0.274 5.274 12 C 0.260 3.740 13 N -0.238 5.238 14 C 0.264 3.736 15 C -0.366 4.366 16 H 0.119 0.881 17 C -0.170 4.170 18 N -0.348 5.348 19 Si 0.781 3.219 20 H -0.179 1.179 21 H -0.178 1.178 22 H -0.178 1.178 23 C -0.340 4.340 24 C 0.023 3.977 25 N -0.238 5.238 26 C 0.008 3.992 27 N -0.235 5.235 28 H 0.068 0.932 29 H 0.110 0.890 30 H 0.105 0.895 31 H 0.117 0.883 32 H 0.120 0.880 33 H 0.260 0.740 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -5.857 13.236 0.972 14.507 hybrid contribution 0.829 0.317 -0.170 0.904 sum -5.027 13.553 0.802 14.478 Atomic orbital electron populations 1.21803 0.90283 1.03001 1.04476 1.21534 0.97315 0.95140 0.78480 0.85829 1.89199 1.38192 1.68738 1.31422 1.21440 0.88095 0.99902 0.86575 1.21962 1.04041 1.05926 1.00428 1.22619 0.90919 0.92147 0.91581 1.66907 1.31807 1.25171 1.02139 1.22687 0.88103 0.89577 0.89929 1.98406 1.89699 1.97073 1.09027 1.67592 1.17038 1.25591 1.17201 1.17294 0.85222 0.84920 0.86533 1.41338 1.30969 1.38656 1.12857 1.16636 0.85867 0.84287 0.86800 1.20269 1.21941 0.95989 0.98362 0.88075 1.26858 0.92136 0.96489 1.01487 1.69380 1.25109 1.09859 1.30454 0.85393 0.79725 0.79320 0.77499 1.17851 1.17793 1.17765 1.12852 1.29707 0.89475 1.01968 1.24792 0.90421 0.91284 0.91165 1.81029 1.17984 1.10708 1.14128 1.25283 0.90460 0.91959 0.91484 1.81078 1.18002 1.08999 1.15434 0.93174 0.89049 0.89505 0.88250 0.88046 0.74026 0.87609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 9.62 71.98 0.69 -1.85 16 2 C 0.13 2.91 4.00 29.92 0.12 3.03 16 3 H 0.12 2.11 8.14 -2.39 -0.02 2.10 16 4 O -0.36 -8.60 11.42 -148.98 -1.70 -10.30 16 5 C 0.12 2.82 7.43 71.26 0.53 3.35 16 6 C -0.31 -9.44 6.29 -19.62 -0.12 -9.56 16 7 C 0.17 4.97 6.85 42.63 0.29 5.26 16 8 N -0.54 -17.05 10.41 -178.84 -1.86 -18.91 16 9 C 0.39 13.51 8.17 180.77 1.48 14.99 16 10 Cl 0.03 0.91 29.26 -2.72 -0.08 0.83 16 11 N -0.55 -20.53 8.46 -188.39 -1.59 -22.12 16 12 C 0.50 17.68 6.02 132.88 0.80 18.48 16 13 N -0.61 -21.86 3.35 -184.55 -0.62 -22.48 16 14 C 0.37 14.73 5.59 38.98 0.22 14.95 16 15 C -0.34 -13.52 7.50 23.08 0.17 -13.35 16 16 H 0.10 4.23 7.19 -2.91 -0.02 4.21 16 17 C 0.06 2.19 4.71 85.56 0.40 2.59 16 18 N -0.73 -25.03 11.02 21.98 0.24 -24.79 16 19 Si 0.96 29.33 29.58 68.60 2.03 31.35 16 20 H -0.25 -7.88 7.11 99.48 0.71 -7.17 16 21 H -0.25 -7.18 7.11 99.48 0.71 -6.48 16 22 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 23 C -0.32 -13.78 5.88 -20.08 -0.12 -13.90 16 24 C 0.33 15.06 14.00 88.34 1.24 16.29 16 25 N -0.56 -26.41 18.53 19.00 0.35 -26.06 16 26 C 0.31 13.79 14.82 88.33 1.31 15.10 16 27 N -0.55 -25.08 18.54 19.00 0.35 -24.72 16 28 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.27 16 30 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.42 13.55 8.67 -92.71 -0.80 12.74 16 34 H 0.31 9.65 8.29 -92.71 -0.77 8.88 16 Total: -1.00 -51.31 335.77 4.54 -46.77 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 0.41 Total: 15.05 kcal Atomic # 6 Polarization: 48.37 SS G_CDS: 7.01 Total: 55.38 kcal Atomic # 7 Polarization: -135.95 SS G_CDS: -3.13 Total: -139.08 kcal Atomic # 8 Polarization: -8.60 SS G_CDS: -1.70 Total: -10.30 kcal Atomic # 14 Polarization: 29.33 SS G_CDS: 2.03 Total: 31.35 kcal Atomic # 17 Polarization: 0.91 SS G_CDS: -0.08 Total: 0.83 kcal Total: -51.31 4.54 -46.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080470.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.344 kcal (2) G-P(sol) polarization free energy of solvation -51.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds