Wall clock time and date at job start Tue Mar 31 2020 17:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.18076 * 2 1 4 4 O 1.44373 * 110.74907 * 238.49356 * 2 1 3 5 5 C 1.44009 * 104.74560 * 269.31836 * 4 2 1 6 6 C 1.50765 * 105.92921 * 331.40246 * 5 4 2 7 7 C 1.38398 * 107.47843 * 17.74539 * 6 5 4 8 8 N 1.32123 * 119.23566 * 180.32992 * 7 6 5 9 9 C 1.32093 * 120.70078 * 359.72962 * 8 7 6 10 10 Cl 1.73605 * 119.00827 * 180.02562 * 9 8 7 11 11 N 1.31875 * 121.98372 * 359.97438 * 9 8 7 12 12 C 1.33195 * 120.70814 * 0.02562 * 11 9 8 13 13 N 1.38751 * 120.68890 * 179.97438 * 12 11 9 14 14 C 1.38443 * 120.00260 * 1.38373 * 13 12 11 15 15 C 1.38945 * 119.99905 * 58.42389 * 14 13 12 16 16 H 1.08005 * 120.00147 * 205.62028 * 15 14 13 17 17 C 1.40861 * 119.99884 * 25.62002 * 15 14 13 18 18 N 1.30324 * 119.99826 * 194.73729 * 17 15 14 19 19 Si 1.86799 * 120.00280 * 14.73350 * 17 15 14 20 20 H 1.48497 * 109.47228 * 267.36752 * 19 17 15 21 21 H 1.48500 * 109.47459 * 147.36195 * 19 17 15 22 22 H 1.48501 * 109.46997 * 27.36435 * 19 17 15 23 23 C 1.41128 * 120.00434 * 238.42500 * 14 13 12 24 24 C 1.43202 * 119.99443 * 4.51029 * 23 14 13 25 25 N 7.02387 * 137.03237 * 177.54402 * 2 1 3 26 26 C 1.43200 * 120.00344 * 184.51582 * 23 14 13 27 27 N 9.40055 * 118.36485 * 152.94535 * 2 1 3 28 28 H 1.09006 * 109.46968 * 298.27996 * 1 2 3 29 29 H 1.08997 * 109.47078 * 58.27920 * 1 2 3 30 30 H 1.08998 * 109.46965 * 178.28579 * 1 2 3 31 31 H 1.08998 * 110.16388 * 212.28991 * 5 4 2 32 32 H 1.08996 * 110.22205 * 90.55032 * 5 4 2 33 33 H 0.97002 * 119.99838 * 181.38678 * 13 12 11 34 34 H 0.97004 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9060 1.0231 0.0000 4 8 2.0415 -0.7055 -1.1511 5 6 2.1869 -2.0689 -0.7106 6 6 2.4450 -1.9990 0.7732 7 6 2.0499 -0.7450 1.2053 8 7 2.1824 -0.4309 2.4818 9 6 2.6804 -1.3007 3.3421 10 17 2.8344 -0.8419 5.0094 11 7 3.0633 -2.5074 2.9730 12 6 2.9598 -2.8950 1.7029 13 7 3.3633 -4.1646 1.3148 14 6 3.8530 -5.0534 2.2565 15 6 3.0666 -5.4185 3.3422 16 1 3.5319 -5.7487 4.2593 17 6 1.6625 -5.3579 3.2469 18 7 0.9331 -5.4172 4.3252 19 14 0.8461 -5.1923 1.5749 20 1 0.6245 -3.7555 1.2723 21 1 -0.4581 -5.9023 1.5884 22 1 1.7230 -5.7877 0.5348 23 6 5.1511 -5.5886 2.1138 24 6 5.9974 -5.1398 1.0494 25 7 6.6697 -4.7830 0.2051 26 6 5.6217 -6.5805 3.0331 27 7 5.9961 -7.3667 3.7624 28 1 -0.3633 0.4869 0.9051 29 1 -0.3633 0.5403 -0.8741 30 1 -0.3633 -1.0272 -0.0307 31 1 3.0298 -2.5394 -1.2167 32 1 1.2719 -2.6278 -0.9067 33 1 3.3022 -4.4294 0.3836 34 1 -0.0338 -5.3751 4.2596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169080479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:28 Heat of formation + Delta-G solvation = 77.702454 kcal Electronic energy + Delta-G solvation = -25626.370671 eV Core-core repulsion = 21779.245052 eV Total energy + Delta-G solvation = -3847.125619 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83083 -39.10706 -37.98797 -36.64814 -35.54425 -34.84273 -34.34618 -33.21714 -32.17201 -31.32485 -29.91242 -27.43433 -26.76913 -24.87144 -23.24282 -21.84684 -21.14809 -19.48854 -18.59458 -17.90826 -17.22208 -16.81414 -16.42005 -16.25198 -15.67119 -15.29509 -14.98842 -14.46399 -13.70856 -13.57199 -13.51265 -13.36154 -13.06553 -12.88133 -12.72484 -12.37437 -12.19219 -11.91364 -11.82616 -11.73767 -11.63610 -11.62110 -11.38485 -11.30866 -11.07604 -10.94529 -10.80719 -10.68082 -10.40104 -10.10535 -9.41301 -9.25490 -8.73616 -7.96677 -7.74169 -5.50665 0.72639 1.11764 1.45145 1.90708 2.42556 2.60080 2.61833 3.04596 3.18202 3.49130 3.62045 3.64772 3.73697 3.94644 4.09101 4.10528 4.22008 4.49247 4.80723 4.91152 4.93789 5.04381 5.07983 5.21563 5.33501 5.39688 5.53674 5.63088 5.78365 5.91563 5.99079 6.26730 6.31258 6.61833 6.74107 7.06852 7.36059 7.41219 7.66447 7.88395 8.12503 8.81013 9.02505 9.05931 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005892 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.695429 B = 4751.422763 C = 5220.473083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.131 3.869 3 H 0.121 0.879 4 O -0.344 6.344 5 C 0.107 3.893 6 C -0.308 4.308 7 C 0.185 3.815 8 N -0.528 5.528 9 C 0.409 3.591 10 Cl 0.032 6.968 11 N -0.508 5.508 12 C 0.488 3.512 13 N -0.650 5.650 14 C 0.324 3.676 15 C -0.312 4.312 16 H 0.127 0.873 17 C 0.073 3.927 18 N -0.711 5.711 19 Si 0.908 3.092 20 H -0.256 1.256 21 H -0.275 1.275 22 H -0.244 1.244 23 C -0.296 4.296 24 C 0.305 3.695 25 N -0.531 5.531 26 C 0.324 3.676 27 N -0.524 5.524 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.415 0.585 34 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.377 10.185 -5.673 15.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.072 3.928 3 H 0.139 0.861 4 O -0.262 6.262 5 C 0.030 3.970 6 C -0.319 4.319 7 C 0.038 3.962 8 N -0.250 5.250 9 C 0.114 3.886 10 Cl 0.060 6.940 11 N -0.232 5.232 12 C 0.246 3.754 13 N -0.280 5.280 14 C 0.222 3.778 15 C -0.339 4.339 16 H 0.144 0.856 17 C -0.160 4.160 18 N -0.328 5.328 19 Si 0.732 3.268 20 H -0.181 1.181 21 H -0.201 1.201 22 H -0.167 1.167 23 C -0.315 4.315 24 C -0.002 4.002 25 N -0.213 5.213 26 C 0.015 3.985 27 N -0.206 5.206 28 H 0.096 0.904 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.255 0.745 34 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.770 9.766 -4.634 13.920 hybrid contribution -0.956 -0.240 -1.034 1.429 sum -9.726 9.526 -5.668 14.747 Atomic orbital electron populations 1.22131 0.92787 1.03391 1.03697 1.21315 0.94741 0.96674 0.80053 0.86110 1.89284 1.85742 1.19596 1.31536 1.21446 1.02286 0.85093 0.88190 1.21757 1.12299 0.98543 0.99306 1.22016 0.90405 0.92331 0.91400 1.66906 1.20526 1.35944 1.01639 1.22564 0.91346 0.85051 0.89590 1.98434 1.95551 1.91120 1.08889 1.67717 1.22840 1.16886 1.15720 1.17281 0.86294 0.84794 0.87061 1.42314 1.64676 1.09762 1.11279 1.16740 0.89109 0.86398 0.85506 1.20030 0.90436 1.24285 0.99115 0.85569 1.26741 0.97972 0.91061 1.00213 1.69397 1.09510 1.22366 1.31521 0.86291 0.79179 0.80533 0.80839 1.18104 1.20116 1.16727 1.12592 0.95694 1.17675 1.05514 1.25251 0.92007 0.91300 0.91654 1.81118 1.10288 1.14646 1.15244 1.24534 0.91853 0.90781 0.91299 1.81068 1.10164 1.15790 1.13552 0.90393 0.90406 0.91952 0.88016 0.90325 0.74470 0.88341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.56 37.16 0.36 -1.14 16 2 C 0.13 1.49 4.05 -27.77 -0.11 1.37 16 3 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 4 O -0.34 -4.22 11.47 -35.23 -0.40 -4.62 16 5 C 0.11 1.31 7.24 36.04 0.26 1.57 16 6 C -0.31 -4.67 5.32 -104.25 -0.55 -5.22 16 7 C 0.18 2.71 6.85 -82.30 -0.56 2.14 16 8 N -0.53 -8.52 10.41 -7.88 -0.08 -8.61 16 9 C 0.41 7.15 8.17 -91.83 -0.75 6.40 16 10 Cl 0.03 0.50 29.26 -51.86 -1.52 -1.02 16 11 N -0.51 -9.62 8.86 -10.89 -0.10 -9.72 16 12 C 0.49 8.51 4.87 -154.63 -0.75 7.76 16 13 N -0.65 -11.29 2.23 -9.69 -0.02 -11.31 16 14 C 0.32 6.39 5.06 -83.52 -0.42 5.97 16 15 C -0.31 -6.52 8.05 -38.33 -0.31 -6.82 16 16 H 0.13 2.93 7.41 -52.48 -0.39 2.54 16 17 C 0.07 1.43 5.16 -17.20 -0.09 1.35 16 18 N -0.71 -14.37 13.90 55.60 0.77 -13.60 16 19 Si 0.91 14.90 24.32 -169.99 -4.13 10.76 16 20 H -0.26 -4.03 5.64 56.52 0.32 -3.72 16 21 H -0.27 -4.49 7.11 56.52 0.40 -4.09 16 22 H -0.24 -3.72 6.48 56.52 0.37 -3.35 16 23 C -0.30 -6.24 5.88 -104.95 -0.62 -6.86 16 24 C 0.30 6.53 14.82 -22.45 -0.33 6.20 16 25 N -0.53 -11.80 18.54 41.86 0.78 -11.02 16 26 C 0.32 7.34 14.01 -22.48 -0.31 7.02 16 27 N -0.52 -12.49 18.54 41.83 0.78 -11.71 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.61 8.04 -51.93 -0.42 0.20 16 31 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.42 6.24 7.68 -40.82 -0.31 5.93 16 34 H 0.30 5.47 8.29 -40.82 -0.34 5.13 16 LS Contribution 327.93 15.07 4.94 4.94 Total: -1.00 -25.59 327.93 -5.68 -31.27 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -2.49 Total: 4.91 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: -4.20 Total: 19.73 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: 2.12 Total: -65.98 kcal Atomic # 8 Polarization: -4.22 SS G_CDS: -0.40 Total: -4.62 kcal Atomic # 14 Polarization: 14.90 SS G_CDS: -4.13 Total: 10.76 kcal Atomic # 17 Polarization: 0.50 SS G_CDS: -1.52 Total: -1.02 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -25.59 -5.68 -31.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.968 kcal (2) G-P(sol) polarization free energy of solvation -25.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds