Wall clock time and date at job start Tue Mar 31 2020 17:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.18076 * 2 1 4 4 O 1.44373 * 110.74907 * 238.49356 * 2 1 3 5 5 C 1.44009 * 104.74560 * 269.31836 * 4 2 1 6 6 C 1.50765 * 105.92921 * 331.40246 * 5 4 2 7 7 C 1.38398 * 107.47843 * 17.74539 * 6 5 4 8 8 N 1.32123 * 119.23566 * 180.32992 * 7 6 5 9 9 C 1.32093 * 120.70078 * 359.72962 * 8 7 6 10 10 Cl 1.73605 * 119.00827 * 180.02562 * 9 8 7 11 11 N 1.31875 * 121.98372 * 359.97438 * 9 8 7 12 12 C 1.33195 * 120.70814 * 0.02562 * 11 9 8 13 13 N 1.38751 * 120.68890 * 179.97438 * 12 11 9 14 14 C 1.38443 * 120.00260 * 1.38373 * 13 12 11 15 15 C 1.38945 * 119.99905 * 58.42389 * 14 13 12 16 16 H 1.08005 * 120.00147 * 205.62028 * 15 14 13 17 17 C 1.40861 * 119.99884 * 25.62002 * 15 14 13 18 18 N 1.30324 * 119.99826 * 194.73729 * 17 15 14 19 19 Si 1.86799 * 120.00280 * 14.73350 * 17 15 14 20 20 H 1.48497 * 109.47228 * 267.36752 * 19 17 15 21 21 H 1.48500 * 109.47459 * 147.36195 * 19 17 15 22 22 H 1.48501 * 109.46997 * 27.36435 * 19 17 15 23 23 C 1.41128 * 120.00434 * 238.42500 * 14 13 12 24 24 C 1.43202 * 119.99443 * 4.51029 * 23 14 13 25 25 N 7.02387 * 137.03237 * 177.54402 * 2 1 3 26 26 C 1.43200 * 120.00344 * 184.51582 * 23 14 13 27 27 N 9.40055 * 118.36485 * 152.94535 * 2 1 3 28 28 H 1.09006 * 109.46968 * 298.27996 * 1 2 3 29 29 H 1.08997 * 109.47078 * 58.27920 * 1 2 3 30 30 H 1.08998 * 109.46965 * 178.28579 * 1 2 3 31 31 H 1.08998 * 110.16388 * 212.28991 * 5 4 2 32 32 H 1.08996 * 110.22205 * 90.55032 * 5 4 2 33 33 H 0.97002 * 119.99838 * 181.38678 * 13 12 11 34 34 H 0.97004 * 120.00041 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9060 1.0231 0.0000 4 8 2.0415 -0.7055 -1.1511 5 6 2.1869 -2.0689 -0.7106 6 6 2.4450 -1.9990 0.7732 7 6 2.0499 -0.7450 1.2053 8 7 2.1824 -0.4309 2.4818 9 6 2.6804 -1.3007 3.3421 10 17 2.8344 -0.8419 5.0094 11 7 3.0633 -2.5074 2.9730 12 6 2.9598 -2.8950 1.7029 13 7 3.3633 -4.1646 1.3148 14 6 3.8530 -5.0534 2.2565 15 6 3.0666 -5.4185 3.3422 16 1 3.5319 -5.7487 4.2593 17 6 1.6625 -5.3579 3.2469 18 7 0.9331 -5.4172 4.3252 19 14 0.8461 -5.1923 1.5749 20 1 0.6245 -3.7555 1.2723 21 1 -0.4581 -5.9023 1.5884 22 1 1.7230 -5.7877 0.5348 23 6 5.1511 -5.5886 2.1138 24 6 5.9974 -5.1398 1.0494 25 7 6.6697 -4.7830 0.2051 26 6 5.6217 -6.5805 3.0331 27 7 5.9961 -7.3667 3.7624 28 1 -0.3633 0.4869 0.9051 29 1 -0.3633 0.5403 -0.8741 30 1 -0.3633 -1.0272 -0.0307 31 1 3.0298 -2.5394 -1.2167 32 1 1.2719 -2.6278 -0.9067 33 1 3.3022 -4.4294 0.3836 34 1 -0.0338 -5.3751 4.2596 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169080479.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:27 Heat of formation + Delta-G solvation = 62.757948 kcal Electronic energy + Delta-G solvation = -25627.018714 eV Core-core repulsion = 21779.245052 eV Total energy + Delta-G solvation = -3847.773661 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.00418 -40.23452 -39.35987 -37.91612 -37.20971 -36.60255 -35.86124 -34.51963 -33.46525 -32.19774 -31.32365 -29.07886 -27.76245 -26.04915 -24.42702 -23.18491 -22.37422 -21.03836 -19.80161 -19.41795 -18.62712 -18.12954 -17.61640 -17.44676 -16.90103 -16.54820 -16.17428 -15.59147 -14.96435 -14.81352 -14.58740 -14.55889 -14.48140 -14.46764 -14.12826 -13.69727 -13.56507 -13.45266 -13.27388 -13.08403 -13.01205 -12.81761 -12.76093 -12.58705 -12.50469 -12.39371 -12.12550 -11.96050 -11.66147 -11.24699 -10.67603 -10.52657 -10.12378 -9.45716 -9.18769 -7.19990 -0.49819 -0.15974 0.20282 0.41145 1.08080 1.29722 1.35130 1.70003 1.84241 1.99863 2.17847 2.35215 2.39182 2.47303 2.56676 2.71167 2.98416 3.25781 3.35760 3.64275 3.81589 3.93674 4.04555 4.18322 4.34966 4.39163 4.49287 4.64305 4.70415 4.75263 4.88934 5.20285 5.23585 5.32086 5.44453 5.52836 5.70714 5.97239 6.18659 6.36938 6.81470 7.09310 7.28171 7.55464 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.010533 B = 0.005892 C = 0.005362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2657.695429 B = 4751.422763 C = 5220.473083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.133 3.867 3 H 0.139 0.861 4 O -0.347 6.347 5 C 0.106 3.894 6 C -0.304 4.304 7 C 0.177 3.823 8 N -0.527 5.527 9 C 0.394 3.606 10 Cl 0.037 6.963 11 N -0.540 5.540 12 C 0.471 3.529 13 N -0.649 5.649 14 C 0.339 3.661 15 C -0.319 4.319 16 H 0.093 0.907 17 C 0.048 3.952 18 N -0.737 5.737 19 Si 0.943 3.057 20 H -0.243 1.243 21 H -0.270 1.270 22 H -0.223 1.223 23 C -0.306 4.306 24 C 0.315 3.685 25 N -0.544 5.544 26 C 0.327 3.673 27 N -0.554 5.554 28 H 0.079 0.921 29 H 0.101 0.899 30 H 0.057 0.943 31 H 0.115 0.885 32 H 0.103 0.897 33 H 0.427 0.573 34 H 0.316 0.684 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 11.521 -8.084 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.074 3.926 3 H 0.157 0.843 4 O -0.265 6.265 5 C 0.028 3.972 6 C -0.314 4.314 7 C 0.031 3.969 8 N -0.249 5.249 9 C 0.099 3.901 10 Cl 0.065 6.935 11 N -0.264 5.264 12 C 0.231 3.769 13 N -0.281 5.281 14 C 0.237 3.763 15 C -0.345 4.345 16 H 0.110 0.890 17 C -0.183 4.183 18 N -0.354 5.354 19 Si 0.763 3.237 20 H -0.168 1.168 21 H -0.196 1.196 22 H -0.146 1.146 23 C -0.325 4.325 24 C 0.009 3.991 25 N -0.227 5.227 26 C 0.020 3.980 27 N -0.237 5.237 28 H 0.098 0.902 29 H 0.119 0.881 30 H 0.076 0.924 31 H 0.133 0.867 32 H 0.121 0.879 33 H 0.270 0.730 34 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.466 11.122 -7.051 16.821 hybrid contribution -0.478 -0.572 -0.180 0.767 sum -10.944 10.550 -7.231 16.833 Atomic orbital electron populations 1.22136 0.90865 1.03553 1.04952 1.21587 0.96047 0.96864 0.78086 0.84318 1.89292 1.85996 1.19625 1.31546 1.21666 1.04007 0.85529 0.85962 1.22107 1.10661 0.97911 1.00768 1.22753 0.89678 0.92896 0.91580 1.66983 1.20136 1.35455 1.02314 1.22729 0.92019 0.85111 0.90242 1.98425 1.95557 1.90999 1.08532 1.67616 1.23842 1.17871 1.17065 1.17431 0.87210 0.85033 0.87261 1.42139 1.65137 1.09524 1.11330 1.16455 0.88205 0.85958 0.85674 1.19925 0.91551 1.24671 0.98391 0.88953 1.27408 0.97581 0.90169 1.03159 1.69398 1.10467 1.22371 1.33209 0.85761 0.78818 0.81429 0.77739 1.16753 1.19602 1.14578 1.12644 0.96370 1.17966 1.05501 1.25164 0.91680 0.90907 0.91385 1.81119 1.10522 1.15277 1.15764 1.24843 0.91273 0.90713 0.91124 1.81048 1.11061 1.17024 1.14550 0.90179 0.88077 0.92395 0.86699 0.87929 0.73012 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.29 9.56 71.98 0.69 -1.60 16 2 C 0.13 2.54 4.05 29.92 0.12 2.66 16 3 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 4 O -0.35 -7.13 11.47 -148.98 -1.71 -8.84 16 5 C 0.11 2.16 7.24 71.26 0.52 2.68 16 6 C -0.30 -8.39 5.32 -19.62 -0.10 -8.49 16 7 C 0.18 4.74 6.85 42.62 0.29 5.03 16 8 N -0.53 -16.19 10.41 -178.83 -1.86 -18.06 16 9 C 0.39 13.51 8.17 180.77 1.48 14.99 16 10 Cl 0.04 1.15 29.26 -2.72 -0.08 1.07 16 11 N -0.54 -20.17 8.86 -188.38 -1.67 -21.84 16 12 C 0.47 15.68 4.87 132.88 0.65 16.33 16 13 N -0.65 -21.44 2.23 -184.56 -0.41 -21.85 16 14 C 0.34 13.26 5.06 38.98 0.20 13.46 16 15 C -0.32 -13.48 8.05 23.08 0.19 -13.29 16 16 H 0.09 4.49 7.41 -2.91 -0.02 4.47 16 17 C 0.05 1.85 5.16 85.56 0.44 2.29 16 18 N -0.74 -29.83 13.90 21.98 0.31 -29.53 16 19 Si 0.94 28.32 24.32 68.60 1.67 29.99 16 20 H -0.24 -6.78 5.64 99.48 0.56 -6.22 16 21 H -0.27 -7.92 7.11 99.48 0.71 -7.22 16 22 H -0.22 -5.96 6.48 99.48 0.64 -5.32 16 23 C -0.31 -12.87 5.88 -20.08 -0.12 -12.99 16 24 C 0.32 13.26 14.82 88.32 1.31 14.57 16 25 N -0.54 -23.60 18.54 19.01 0.35 -23.25 16 26 C 0.33 15.09 14.01 88.33 1.24 16.33 16 27 N -0.55 -26.98 18.54 19.00 0.35 -26.63 16 28 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.06 0.91 8.04 -2.39 -0.02 0.89 16 31 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.43 11.72 7.68 -92.71 -0.71 11.01 16 34 H 0.32 11.19 8.29 -92.71 -0.77 10.42 16 Total: -1.00 -55.07 327.93 4.13 -50.93 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.29 Total: 16.05 kcal Atomic # 6 Polarization: 45.07 SS G_CDS: 6.89 Total: 51.96 kcal Atomic # 7 Polarization: -138.22 SS G_CDS: -2.93 Total: -141.15 kcal Atomic # 8 Polarization: -7.13 SS G_CDS: -1.71 Total: -8.84 kcal Atomic # 14 Polarization: 28.32 SS G_CDS: 1.67 Total: 29.99 kcal Atomic # 17 Polarization: 1.15 SS G_CDS: -0.08 Total: 1.07 kcal Total: -55.07 4.13 -50.93 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169080479.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.692 kcal (2) G-P(sol) polarization free energy of solvation -55.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds