Wall clock time and date at job start Tue Mar 31 2020 16:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47122 * 240.00135 * 3 2 1 5 5 H 1.48492 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46887 * 120.00348 * 3 2 1 7 7 C 1.37877 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.46041 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31151 * 181.37412 * 10 9 7 12 12 N 1.46929 * 108.77468 * 305.36020 * 11 10 9 13 13 S 1.65595 * 120.63526 * 233.58469 * 12 11 10 14 14 O 1.42108 * 106.40145 * 336.46809 * 13 12 11 15 15 O 1.42097 * 106.40617 * 203.54135 * 13 12 11 16 16 C 1.76208 * 107.21623 * 90.00330 * 13 12 11 17 17 C 1.38590 * 120.78262 * 90.00241 * 16 13 12 18 18 N 1.32327 * 119.11794 * 180.02562 * 17 16 13 19 19 C 1.31929 * 120.80806 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.14121 * 179.97438 * 19 18 17 21 21 N 1.31920 * 121.71401 * 0.25842 * 19 18 17 22 22 C 1.32326 * 120.80453 * 359.48179 * 21 19 18 23 23 C 1.46932 * 118.73395 * 53.86716 * 12 11 10 24 24 C 1.53035 * 109.44781 * 300.06300 * 9 7 2 25 25 H 0.97000 * 120.00312 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.45909 * 60.02951 * 9 7 2 27 27 H 1.09000 * 109.49655 * 61.41919 * 10 9 7 28 28 H 1.08999 * 109.52287 * 301.33787 * 10 9 7 29 29 H 1.09003 * 109.58284 * 185.57634 * 11 10 9 30 30 H 1.08996 * 109.70713 * 65.22224 * 11 10 9 31 31 H 1.07995 * 120.44136 * 359.97438 * 17 16 13 32 32 H 1.08006 * 120.43996 * 180.25090 * 22 21 19 33 33 H 1.09000 * 109.58674 * 65.92472 * 23 12 11 34 34 H 1.08996 * 109.58441 * 186.35153 * 23 12 11 35 35 H 1.08999 * 109.50151 * 298.57083 * 24 9 7 36 36 H 1.08999 * 109.49820 * 58.67263 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 -0.0352 12 7 0.5226 -5.0088 1.0819 13 16 0.5093 -6.2696 2.1554 14 8 1.0835 -7.3792 1.4783 15 8 -0.7912 -6.2961 2.7272 16 6 1.6183 -5.8550 3.4605 17 6 1.1716 -5.1722 4.5808 18 7 2.0330 -4.8772 5.5410 19 6 3.3016 -5.2254 5.4411 20 17 4.3943 -4.8157 6.7263 21 7 3.7624 -5.8718 4.3875 22 6 2.9577 -6.2044 3.3912 23 6 -0.4238 -3.8940 1.2247 24 6 0.3708 -2.5793 1.2487 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5568 -0.8906 27 1 2.8559 -3.6192 0.9018 28 1 2.8886 -3.5917 -0.8780 29 1 2.1754 -5.8174 0.0644 30 1 0.9374 -5.0739 -0.9783 31 1 0.1345 -4.8840 4.6685 32 1 3.3405 -6.7372 2.5332 33 1 -1.1152 -3.8914 0.3820 34 1 -0.9796 -4.0036 2.1558 35 1 0.9987 -2.5467 2.1391 36 1 -0.3218 -1.7377 1.2603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185026884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:24 Heat of formation + Delta-G solvation = -29.379797 kcal Electronic energy + Delta-G solvation = -24545.293203 eV Core-core repulsion = 20796.675350 eV Total energy + Delta-G solvation = -3748.617854 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.38335 -37.91031 -37.40218 -37.32910 -35.95406 -34.33961 -33.56278 -32.52471 -31.01614 -30.23379 -25.88803 -25.29676 -25.11190 -22.66894 -22.48004 -19.85717 -18.80089 -18.51152 -18.36744 -17.88479 -17.21351 -16.32408 -15.67898 -15.64595 -14.70997 -14.64831 -14.24378 -14.11498 -13.68426 -13.30451 -13.17735 -12.93451 -12.88868 -12.41838 -12.34774 -12.19735 -12.08394 -11.86644 -11.57505 -11.39908 -11.14934 -10.99635 -10.91369 -10.75386 -10.52637 -10.29490 -10.16402 -9.89013 -9.72658 -9.35022 -9.12970 -8.56744 -8.37947 -6.09709 -4.16258 -0.17926 0.30621 0.56101 0.97931 2.80034 3.11542 3.24864 3.30441 3.32976 3.51105 3.63643 3.97870 4.11657 4.14630 4.35075 4.67677 4.95400 5.12768 5.20180 5.55669 5.57861 5.72918 5.92638 5.98673 6.14940 6.18024 6.25236 6.26849 6.55851 6.72602 6.91639 7.01110 7.26696 7.27040 7.60533 7.83178 7.96849 8.31988 8.86910 9.49429 10.95667 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.004834 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.558383 B = 5790.864415 C = 7488.444828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.051 3.949 10 C -0.125 4.125 11 C 0.120 3.880 12 N -0.983 5.983 13 S 2.700 3.300 14 O -0.953 6.953 15 O -0.950 6.950 16 C -0.792 4.792 17 C 0.271 3.729 18 N -0.515 5.515 19 C 0.405 3.595 20 Cl 0.037 6.963 21 N -0.517 5.517 22 C 0.269 3.731 23 C 0.115 3.885 24 C -0.125 4.125 25 H 0.262 0.738 26 H 0.031 0.969 27 H 0.048 0.952 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.196 0.804 32 H 0.195 0.805 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.035 0.965 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.652 -11.686 7.201 13.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.553 4.553 8 H 0.071 0.929 9 C 0.032 3.968 10 C -0.164 4.164 11 C -0.005 4.005 12 N -0.824 5.824 13 S 2.785 3.215 14 O -0.943 6.943 15 O -0.940 6.940 16 C -0.878 4.878 17 C 0.104 3.896 18 N -0.232 5.232 19 C 0.112 3.888 20 Cl 0.065 6.935 21 N -0.234 5.234 22 C 0.102 3.898 23 C -0.009 4.009 24 C -0.164 4.164 25 H 0.072 0.928 26 H 0.049 0.951 27 H 0.067 0.933 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.213 0.787 32 H 0.212 0.788 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.054 0.946 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 2.789 -12.023 8.054 14.738 hybrid contribution 0.667 1.377 -0.017 1.530 sum 3.457 -10.646 8.037 13.780 Atomic orbital electron populations 1.69811 1.05805 1.26689 1.50561 1.24940 0.94860 0.99013 0.95004 0.86703 0.79676 0.83294 0.78596 1.20276 1.21244 1.20437 1.21150 0.92840 0.90621 1.50730 0.92865 1.18584 0.92561 0.91460 0.94150 1.22029 0.98903 0.94565 1.00907 1.21630 0.90870 0.99416 0.88586 1.57628 1.46235 1.39420 1.39087 1.02045 0.73438 0.73411 0.72655 1.93576 1.79538 1.48739 1.72427 1.93584 1.35380 1.86323 1.78692 1.33267 1.15056 1.17657 1.21862 1.23087 0.99482 0.82731 0.84251 1.68082 1.02420 1.21708 1.31006 1.23419 0.87793 0.88503 0.89053 1.98463 1.59778 1.90727 1.44512 1.68066 1.39250 1.14428 1.01611 1.23060 0.86863 0.85802 0.94099 1.21927 0.90613 0.86644 1.01678 1.22120 0.99998 0.94886 0.99389 0.92824 0.95128 0.93299 0.91852 0.90559 0.90736 0.78748 0.78828 0.90800 0.90751 0.94604 0.87624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.59 11.31 55.43 0.63 -22.96 16 2 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 3 Si 0.89 20.39 29.54 -169.99 -5.02 15.37 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.05 8.56 -34.44 -0.29 -13.34 16 8 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 9 C 0.05 1.12 2.06 -91.73 -0.19 0.93 16 10 C -0.13 -2.20 5.30 -26.61 -0.14 -2.34 16 11 C 0.12 1.73 6.37 -3.71 -0.02 1.71 16 12 N -0.98 -14.38 3.28 -113.27 -0.37 -14.75 16 13 S 2.70 36.41 5.72 -107.50 -0.61 35.80 16 14 O -0.95 -13.83 16.10 -57.17 -0.92 -14.75 16 15 O -0.95 -14.28 16.09 -57.17 -0.92 -15.20 16 16 C -0.79 -10.12 6.01 -39.32 -0.24 -10.36 16 17 C 0.27 3.49 10.80 -17.21 -0.19 3.31 16 18 N -0.52 -7.24 10.41 -11.64 -0.12 -7.36 16 19 C 0.40 5.62 8.18 -91.93 -0.75 4.87 16 20 Cl 0.04 0.44 29.27 -51.86 -1.52 -1.08 16 21 N -0.52 -7.07 10.41 -11.63 -0.12 -7.20 16 22 C 0.27 3.33 10.80 -17.21 -0.19 3.14 16 23 C 0.12 1.86 6.41 -3.48 -0.02 1.84 16 24 C -0.12 -2.52 5.17 -26.39 -0.14 -2.66 16 25 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 0.92 7.13 -51.93 -0.37 0.55 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.20 2.02 7.72 -52.49 -0.41 1.62 16 32 H 0.20 1.84 7.72 -52.48 -0.41 1.44 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.07 1.06 7.12 -51.93 -0.37 0.69 16 35 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.11 2.45 6.03 -51.93 -0.31 2.13 16 LS Contribution 329.01 15.07 4.96 4.96 Total: -1.00 -29.57 329.01 -10.23 -39.79 By element: Atomic # 1 Polarization: 2.70 SS G_CDS: -3.94 Total: -1.24 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.26 Total: -11.36 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.01 Total: -52.28 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -1.84 Total: -29.95 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 36.41 SS G_CDS: -0.61 Total: 35.80 kcal Atomic # 17 Polarization: 0.44 SS G_CDS: -1.52 Total: -1.08 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.57 -10.23 -39.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185026884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.413 kcal (2) G-P(sol) polarization free energy of solvation -29.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds