Wall clock time and date at job start Tue Mar 31 2020 16:34:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 119.99709 * 2 1 4 4 H 1.48500 * 109.47122 * 240.00135 * 3 2 1 5 5 H 1.48492 * 109.47541 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46887 * 120.00348 * 3 2 1 7 7 C 1.37877 * 120.00016 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99762 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00139 * 359.97438 * 7 2 1 10 10 C 1.53042 * 109.46041 * 180.02562 * 9 7 2 11 11 C 1.53190 * 109.31151 * 181.37412 * 10 9 7 12 12 N 1.46929 * 108.77468 * 305.36020 * 11 10 9 13 13 S 1.65595 * 120.63526 * 233.58469 * 12 11 10 14 14 O 1.42108 * 106.40145 * 336.46809 * 13 12 11 15 15 O 1.42097 * 106.40617 * 203.54135 * 13 12 11 16 16 C 1.76208 * 107.21623 * 90.00330 * 13 12 11 17 17 C 1.38590 * 120.78262 * 90.00241 * 16 13 12 18 18 N 1.32327 * 119.11794 * 180.02562 * 17 16 13 19 19 C 1.31929 * 120.80806 * 359.97438 * 18 17 16 20 20 Cl 1.73599 * 119.14121 * 179.97438 * 19 18 17 21 21 N 1.31920 * 121.71401 * 0.25842 * 19 18 17 22 22 C 1.32326 * 120.80453 * 359.48179 * 21 19 18 23 23 C 1.46932 * 118.73395 * 53.86716 * 12 11 10 24 24 C 1.53035 * 109.44781 * 300.06300 * 9 7 2 25 25 H 0.97000 * 120.00312 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.45909 * 60.02951 * 9 7 2 27 27 H 1.09000 * 109.49655 * 61.41919 * 10 9 7 28 28 H 1.08999 * 109.52287 * 301.33787 * 10 9 7 29 29 H 1.09003 * 109.58284 * 185.57634 * 11 10 9 30 30 H 1.08996 * 109.70713 * 65.22224 * 11 10 9 31 31 H 1.07995 * 120.44136 * 359.97438 * 17 16 13 32 32 H 1.08006 * 120.43996 * 180.25090 * 22 21 19 33 33 H 1.09000 * 109.58674 * 65.92472 * 23 12 11 34 34 H 1.08996 * 109.58441 * 186.35153 * 23 12 11 35 35 H 1.08999 * 109.50151 * 298.57083 * 24 9 7 36 36 H 1.08999 * 109.49820 * 58.67263 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2458 -3.6622 -0.0005 11 6 1.4768 -4.9866 -0.0352 12 7 0.5226 -5.0088 1.0819 13 16 0.5093 -6.2696 2.1554 14 8 1.0835 -7.3792 1.4783 15 8 -0.7912 -6.2961 2.7272 16 6 1.6183 -5.8550 3.4605 17 6 1.1716 -5.1722 4.5808 18 7 2.0330 -4.8772 5.5410 19 6 3.3016 -5.2254 5.4411 20 17 4.3943 -4.8157 6.7263 21 7 3.7624 -5.8718 4.3875 22 6 2.9577 -6.2044 3.3912 23 6 -0.4238 -3.8940 1.2247 24 6 0.3708 -2.5793 1.2487 25 1 -0.4850 0.8400 0.0004 26 1 0.6246 -2.5568 -0.8906 27 1 2.8559 -3.6192 0.9018 28 1 2.8886 -3.5917 -0.8780 29 1 2.1754 -5.8174 0.0644 30 1 0.9374 -5.0739 -0.9783 31 1 0.1345 -4.8840 4.6685 32 1 3.3405 -6.7372 2.5332 33 1 -1.1152 -3.8914 0.3820 34 1 -0.9796 -4.0036 2.1558 35 1 0.9987 -2.5467 2.1391 36 1 -0.3218 -1.7377 1.2603 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185026884.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:23 Heat of formation + Delta-G solvation = -48.889646 kcal Electronic energy + Delta-G solvation = -24546.139214 eV Core-core repulsion = 20796.675350 eV Total energy + Delta-G solvation = -3749.463864 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.37716 -39.30420 -38.53494 -38.28828 -37.08927 -35.34211 -35.29141 -33.52523 -32.63961 -31.65915 -27.62839 -26.27732 -26.13564 -24.16606 -23.93028 -21.22022 -20.03351 -19.50606 -19.38293 -19.05687 -18.48409 -18.07482 -16.82334 -16.69898 -16.51233 -15.66516 -15.43839 -15.07392 -15.04370 -14.87297 -14.55278 -14.36832 -14.06604 -13.73049 -13.52190 -13.36363 -13.33578 -12.95948 -12.81481 -12.80643 -12.60398 -12.46128 -12.41968 -12.09875 -12.01855 -11.86499 -11.40701 -11.30003 -10.93811 -10.89625 -10.77855 -10.36452 -9.88082 -8.05804 -6.17930 -1.20259 -0.77818 -0.41063 0.00203 1.40776 1.42876 1.48584 1.70994 2.08315 2.44024 2.54692 2.56587 2.95207 3.13417 3.21268 3.24031 3.62712 3.77048 4.20952 4.33868 4.42853 4.54048 4.63515 4.67788 4.76563 4.84038 4.96560 5.16966 5.19476 5.32066 5.36945 5.55574 5.64620 5.72043 6.06644 6.22351 6.26573 6.43754 6.93662 7.49785 8.96885 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.010740 B = 0.004834 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2606.558383 B = 5790.864415 C = 7488.444828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.019 3.981 3 Si 0.939 3.061 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.044 3.956 10 C -0.118 4.118 11 C 0.120 3.880 12 N -0.985 5.985 13 S 2.726 3.274 14 O -0.957 6.957 15 O -0.963 6.963 16 C -0.793 4.793 17 C 0.264 3.736 18 N -0.530 5.530 19 C 0.392 3.608 20 Cl 0.049 6.951 21 N -0.527 5.527 22 C 0.267 3.733 23 C 0.124 3.876 24 C -0.116 4.116 25 H 0.260 0.740 26 H 0.005 0.995 27 H 0.046 0.954 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.082 0.918 31 H 0.215 0.785 32 H 0.223 0.777 33 H 0.075 0.925 34 H 0.095 0.905 35 H 0.028 0.972 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.170 -12.929 7.367 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.205 1.205 7 C -0.570 4.570 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.157 4.157 11 C -0.004 4.004 12 N -0.824 5.824 13 S 2.811 3.189 14 O -0.947 6.947 15 O -0.953 6.953 16 C -0.880 4.880 17 C 0.098 3.902 18 N -0.248 5.248 19 C 0.100 3.900 20 Cl 0.077 6.923 21 N -0.245 5.245 22 C 0.100 3.900 23 C 0.000 4.000 24 C -0.156 4.156 25 H 0.069 0.931 26 H 0.024 0.976 27 H 0.065 0.935 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.101 0.899 31 H 0.232 0.768 32 H 0.239 0.761 33 H 0.093 0.907 34 H 0.114 0.886 35 H 0.047 0.953 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.309 -13.274 8.206 15.953 hybrid contribution 0.552 1.763 -0.046 1.848 sum 3.861 -11.511 8.159 14.628 Atomic orbital electron populations 1.69934 1.06674 1.26983 1.51408 1.25566 0.95577 1.01635 0.95206 0.85906 0.78627 0.80372 0.78454 1.19921 1.21110 1.20453 1.21567 0.92836 0.92467 1.50117 0.93559 1.18591 0.93209 0.91911 0.93745 1.21886 0.98147 0.94679 1.00980 1.21679 0.91184 0.98481 0.89057 1.57597 1.46060 1.39053 1.39709 1.01285 0.72916 0.72637 0.72088 1.93568 1.79616 1.48771 1.72763 1.93568 1.36467 1.86397 1.78849 1.33152 1.15167 1.18168 1.21560 1.23517 1.00311 0.82305 0.84062 1.68131 1.02700 1.22355 1.31600 1.23720 0.88149 0.88516 0.89583 1.98462 1.59298 1.90572 1.43920 1.68143 1.39559 1.14850 1.01924 1.23608 0.86668 0.85226 0.94479 1.21711 0.90312 0.85081 1.02939 1.21877 0.99305 0.96229 0.98177 0.93079 0.97635 0.93475 0.91558 0.87361 0.89925 0.76833 0.76063 0.90705 0.88642 0.95283 0.90844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.15 11.31 21.45 0.24 -48.91 16 2 C 0.02 1.00 5.30 84.65 0.45 1.45 16 3 Si 0.94 42.05 29.54 68.60 2.03 44.08 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.53 -27.21 8.56 25.60 0.22 -26.99 16 8 H 0.05 2.37 7.74 -2.91 -0.02 2.34 16 9 C 0.04 1.93 2.06 -11.51 -0.02 1.91 16 10 C -0.12 -4.01 5.30 30.67 0.16 -3.84 16 11 C 0.12 3.17 6.37 86.36 0.55 3.72 16 12 N -0.98 -26.55 3.28 -512.26 -1.68 -28.23 16 13 S 2.73 66.05 5.72 -56.49 -0.32 65.72 16 14 O -0.96 -24.59 16.10 -128.00 -2.06 -26.65 16 15 O -0.96 -26.50 16.09 -128.00 -2.06 -28.56 16 16 C -0.79 -18.42 6.01 22.44 0.13 -18.29 16 17 C 0.26 6.34 10.80 84.70 0.92 7.25 16 18 N -0.53 -14.22 10.41 -190.73 -1.98 -16.21 16 19 C 0.39 10.40 8.18 180.81 1.48 11.87 16 20 Cl 0.05 1.11 29.27 -2.72 -0.08 1.03 16 21 N -0.53 -13.50 10.41 -190.72 -1.98 -15.48 16 22 C 0.27 5.95 10.80 84.70 0.92 6.86 16 23 C 0.12 3.85 6.41 86.51 0.55 4.41 16 24 C -0.12 -4.72 5.17 30.82 0.16 -4.56 16 25 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 26 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 27 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 29 H 0.11 2.20 7.13 -2.39 -0.02 2.19 16 30 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.22 4.04 7.72 -2.91 -0.02 4.01 16 32 H 0.22 3.46 7.72 -2.91 -0.02 3.43 16 33 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.10 2.56 7.12 -2.39 -0.02 2.54 16 35 H 0.03 1.17 8.14 -2.39 -0.02 1.16 16 36 H 0.07 3.48 6.03 -2.39 -0.01 3.46 16 Total: -1.00 -62.76 329.01 -1.27 -64.03 By element: Atomic # 1 Polarization: 4.26 SS G_CDS: 1.12 Total: 5.38 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 5.51 Total: -16.20 kcal Atomic # 7 Polarization: -103.42 SS G_CDS: -5.41 Total: -108.83 kcal Atomic # 8 Polarization: -51.09 SS G_CDS: -4.12 Total: -55.21 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 16 Polarization: 66.05 SS G_CDS: -0.32 Total: 65.72 kcal Atomic # 17 Polarization: 1.11 SS G_CDS: -0.08 Total: 1.03 kcal Total: -62.76 -1.27 -64.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185026884.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.141 kcal (2) G-P(sol) polarization free energy of solvation -62.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds