Wall clock time and date at job start Tue Mar 31 2020 17:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 119.99964 * 2 1 4 4 H 1.48493 * 109.47047 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46952 * 120.00002 * 3 2 1 6 6 H 1.48493 * 109.47030 * 240.00000 * 3 2 1 7 7 C 1.37876 * 120.00026 * 180.02562 * 2 1 3 8 8 C 1.51267 * 120.85110 * 9.96701 * 7 2 1 9 9 C 1.53233 * 108.53731 * 128.62826 * 8 7 2 10 10 C 1.52955 * 109.40269 * 54.62938 * 9 8 7 11 11 H 1.08998 * 109.41323 * 56.50906 * 10 9 8 12 12 N 1.46498 * 109.41206 * 176.36330 * 10 9 8 13 13 S 1.65597 * 119.99933 * 214.99660 * 12 10 9 14 14 O 1.42105 * 106.40067 * 178.54109 * 13 12 10 15 15 O 1.42090 * 106.40617 * 311.46388 * 13 12 10 16 16 C 1.76198 * 107.21776 * 65.00622 * 13 12 10 17 17 C 1.38600 * 120.78404 * 269.71867 * 16 13 12 18 18 N 1.32321 * 119.12188 * 179.74286 * 17 16 13 19 19 C 1.31925 * 120.80146 * 0.56184 * 18 17 16 20 20 Cl 1.73611 * 119.13833 * 179.70652 * 19 18 17 21 21 N 1.31922 * 121.72424 * 359.68770 * 19 18 17 22 22 C 1.32325 * 120.79695 * 0.02562 * 21 19 18 23 23 C 1.52964 * 109.81929 * 296.40179 * 10 9 8 24 24 C 1.51269 * 120.84989 * 189.68622 * 7 2 1 25 25 H 0.96997 * 120.00146 * 185.66876 * 1 2 3 26 26 H 1.08999 * 109.62855 * 248.34628 * 8 7 2 27 27 H 1.09000 * 109.62330 * 8.91498 * 8 7 2 28 28 H 1.08995 * 109.48071 * 174.60825 * 9 8 7 29 29 H 1.09003 * 109.48057 * 294.63543 * 9 8 7 30 30 H 0.97004 * 119.99798 * 35.00676 * 12 10 9 31 31 H 1.08002 * 120.43789 * 0.02562 * 17 16 13 32 32 H 1.08009 * 120.43494 * 180.02562 * 22 21 19 33 33 H 1.08996 * 109.48181 * 183.58329 * 23 10 9 34 34 H 1.09005 * 109.47890 * 303.61910 * 23 10 9 35 35 H 1.08999 * 109.62705 * 351.08098 * 24 7 2 36 36 H 1.08995 * 109.62887 * 111.65511 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2126 6 1 3.1028 1.6964 -1.2124 7 6 2.0045 -1.1940 -0.0005 8 6 1.2847 -2.5052 -0.2259 9 6 2.0090 -3.2741 -1.3360 10 6 3.4871 -3.4212 -0.9711 11 1 3.5738 -3.9123 -0.0019 12 7 4.1617 -4.2304 -1.9890 13 16 5.3829 -5.2602 -1.5526 14 8 5.8001 -5.9150 -2.7428 15 8 6.2645 -4.5107 -0.7281 16 6 4.6746 -6.5026 -0.5234 17 6 4.6159 -6.3363 0.8513 18 7 4.0723 -7.2882 1.5925 19 6 3.6003 -8.3887 1.0389 20 17 2.9029 -9.6131 2.0531 21 7 3.6440 -8.5831 -0.2652 22 6 4.1683 -7.6718 -1.0688 23 6 4.1441 -2.0415 -0.9026 24 6 3.5010 -1.2258 0.2180 25 1 -0.4850 -0.8359 0.0830 26 1 1.2957 -3.0916 0.6929 27 1 0.2553 -2.3107 -0.5269 28 1 1.5615 -4.2619 -1.4455 29 1 1.9187 -2.7279 -2.2750 30 1 3.8932 -4.1628 -2.9187 31 1 5.0045 -5.4396 1.3111 32 1 4.2007 -7.8368 -2.1357 33 1 5.2099 -2.1559 -0.7051 34 1 4.0035 -1.5245 -1.8519 35 1 3.8950 -0.2097 0.2019 36 1 3.7209 -1.6916 1.1785 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185059215.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:02:57 Heat of formation + Delta-G solvation = -65.701341 kcal Electronic energy + Delta-G solvation = -24255.888754 eV Core-core repulsion = 20505.695880 eV Total energy + Delta-G solvation = -3750.192874 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.43744 -39.32370 -38.41085 -38.31770 -37.10303 -35.65951 -35.39212 -33.59012 -33.00546 -31.50940 -28.31412 -26.33102 -26.18197 -24.09682 -23.09694 -21.42300 -20.83566 -19.55227 -19.42708 -19.11980 -18.56823 -18.04751 -17.37061 -16.71421 -16.22834 -15.71400 -15.64613 -15.34377 -15.11835 -14.81795 -14.27737 -14.16148 -14.02820 -13.85085 -13.40195 -13.37649 -13.26936 -12.90658 -12.82938 -12.78461 -12.49147 -12.43133 -12.30158 -12.09986 -11.97016 -11.87210 -11.55858 -11.31663 -11.05727 -10.93237 -10.68364 -10.43428 -10.09456 -8.53821 -6.11336 -1.25262 -0.80511 -0.46177 -0.02897 1.56871 1.60542 1.72866 1.80040 2.03280 2.50642 2.54691 2.59665 2.94801 3.07431 3.18112 3.20039 3.64613 3.80108 4.13991 4.18504 4.35513 4.38354 4.59126 4.71210 4.94018 4.99833 5.00040 5.14976 5.21815 5.29842 5.32288 5.43790 5.56566 5.76551 6.04136 6.11930 6.22308 6.31093 6.79669 7.56906 8.83207 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.014974 B = 0.003883 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.452588 B = 7208.839527 C = 8338.890284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C -0.014 4.014 3 Si 1.089 2.911 4 H -0.300 1.300 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.573 4.573 8 C -0.003 4.003 9 C -0.102 4.102 10 C 0.172 3.828 11 H 0.078 0.922 12 N -1.098 6.098 13 S 2.731 3.269 14 O -0.963 6.963 15 O -0.962 6.962 16 C -0.794 4.794 17 C 0.262 3.738 18 N -0.530 5.530 19 C 0.394 3.606 20 Cl 0.051 6.949 21 N -0.527 5.527 22 C 0.270 3.730 23 C -0.126 4.126 24 C -0.013 4.013 25 H 0.259 0.741 26 H 0.001 0.999 27 H 0.013 0.987 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.430 0.570 31 H 0.212 0.788 32 H 0.227 0.773 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.031 0.969 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.719 -15.718 -2.532 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.213 4.213 3 Si 0.913 3.087 4 H -0.227 1.227 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.592 4.592 8 C -0.041 4.041 9 C -0.141 4.141 10 C 0.066 3.934 11 H 0.096 0.904 12 N -0.860 5.860 13 S 2.815 3.185 14 O -0.953 6.953 15 O -0.952 6.952 16 C -0.881 4.881 17 C 0.096 3.904 18 N -0.248 5.248 19 C 0.102 3.898 20 Cl 0.079 6.921 21 N -0.244 5.244 22 C 0.104 3.896 23 C -0.165 4.165 24 C -0.052 4.052 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.032 0.968 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.268 0.732 31 H 0.228 0.772 32 H 0.243 0.757 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.050 0.950 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 9.963 -14.943 -1.949 18.065 hybrid contribution -0.849 -1.411 -0.031 1.647 sum 9.113 -16.354 -1.980 18.827 Atomic orbital electron populations 1.70914 1.08245 1.30246 1.48759 1.26827 0.96107 1.05087 0.93258 0.83277 0.74316 0.72631 0.78461 1.22713 1.19462 1.18979 1.21580 0.93726 0.93260 1.50662 1.19426 0.95707 0.94990 0.93992 1.21714 0.93853 0.98932 0.99619 1.20555 0.92419 0.91291 0.89139 0.90387 1.55439 1.56984 1.55354 1.18189 1.01057 0.72562 0.72292 0.72617 1.93587 1.80121 1.75917 1.45675 1.93605 1.61564 1.69640 1.70415 1.33022 1.22825 1.20218 1.12072 1.23551 0.82809 0.95488 0.88526 1.68153 1.13227 1.02102 1.41286 1.23759 0.89006 0.89096 0.87928 1.98472 1.79994 1.48740 1.64879 1.68182 1.19108 1.33376 1.03726 1.23663 0.80221 0.83916 1.01836 1.21992 0.98758 0.95403 1.00357 1.19549 0.94372 0.96199 0.95063 0.92987 0.98043 0.96809 0.92273 0.92424 0.73230 0.77155 0.75700 0.91455 0.92313 0.95038 0.96149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.78 13.57 21.45 0.29 -54.49 16 2 C -0.01 -0.75 5.45 84.66 0.46 -0.29 16 3 Si 1.09 47.60 27.20 68.60 1.87 49.47 16 4 H -0.30 -13.65 7.11 99.48 0.71 -12.94 16 5 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.57 -27.82 5.50 -16.17 -0.09 -27.91 16 8 C 0.00 -0.12 5.78 30.11 0.17 0.05 16 9 C -0.10 -3.46 5.46 30.66 0.17 -3.29 16 10 C 0.17 5.08 2.55 44.96 0.11 5.19 16 11 H 0.08 2.18 7.29 -2.39 -0.02 2.16 16 12 N -1.10 -23.86 5.46 -169.51 -0.93 -24.78 16 13 S 2.73 58.20 5.67 -56.49 -0.32 57.88 16 14 O -0.96 -22.32 17.38 -128.00 -2.23 -24.54 16 15 O -0.96 -25.61 16.55 -128.00 -2.12 -27.73 16 16 C -0.79 -16.09 5.84 22.44 0.13 -15.96 16 17 C 0.26 5.81 10.25 84.71 0.87 6.68 16 18 N -0.53 -13.17 10.41 -190.71 -1.98 -15.15 16 19 C 0.39 9.43 8.18 180.81 1.48 10.91 16 20 Cl 0.05 1.03 29.27 -2.72 -0.08 0.95 16 21 N -0.53 -11.82 10.41 -190.71 -1.98 -13.80 16 22 C 0.27 5.09 10.80 84.70 0.91 6.01 16 23 C -0.13 -4.28 5.52 30.51 0.17 -4.12 16 24 C -0.01 -0.55 5.62 29.96 0.17 -0.39 16 25 H 0.26 15.11 6.66 -92.71 -0.62 14.49 16 26 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.01 0.67 6.19 -2.39 -0.01 0.65 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.43 7.47 8.83 -96.74 -0.85 6.62 16 31 H 0.21 3.90 7.71 -2.91 -0.02 3.88 16 32 H 0.23 2.66 7.72 -2.91 -0.02 2.64 16 33 H 0.07 2.11 7.55 -2.39 -0.02 2.09 16 34 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.03 1.28 5.15 -2.39 -0.01 1.26 16 36 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 Total: -1.00 -65.63 326.01 -2.48 -68.10 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: 0.44 Total: 7.21 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.56 Total: -23.12 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -4.60 Total: -108.23 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -4.34 Total: -52.27 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.87 Total: 49.47 kcal Atomic # 16 Polarization: 58.20 SS G_CDS: -0.32 Total: 57.88 kcal Atomic # 17 Polarization: 1.03 SS G_CDS: -0.08 Total: 0.95 kcal Total: -65.63 -2.48 -68.10 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185059215.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.403 kcal (2) G-P(sol) polarization free energy of solvation -65.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds