Wall clock time and date at job start Tue Mar 31 2020 17:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86795 * 119.99819 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00001 * 3 2 1 5 5 H 1.48500 * 109.47104 * 30.00320 * 3 2 1 6 6 H 1.48501 * 109.47063 * 149.99533 * 3 2 1 7 7 C 1.37879 * 119.99840 * 179.97438 * 2 1 3 8 8 C 1.51265 * 120.83517 * 179.97438 * 7 2 1 9 9 C 1.53236 * 108.53501 * 231.34808 * 8 7 2 10 10 C 1.52953 * 109.41342 * 305.39637 * 9 8 7 11 11 H 1.09009 * 109.41519 * 303.48190 * 10 9 8 12 12 N 1.46498 * 109.41478 * 183.62593 * 10 9 8 13 13 S 1.65604 * 120.00412 * 144.99809 * 12 10 9 14 14 O 1.42093 * 106.40481 * 178.54259 * 13 12 10 15 15 O 1.42108 * 106.40034 * 311.46025 * 13 12 10 16 16 C 1.76196 * 107.21845 * 64.99847 * 13 12 10 17 17 C 1.38598 * 120.78532 * 269.72771 * 16 13 12 18 18 N 1.32330 * 119.11859 * 179.74114 * 17 16 13 19 19 C 1.31931 * 120.80357 * 0.51743 * 18 17 16 20 20 Cl 1.73598 * 119.13963 * 179.73277 * 19 18 17 21 21 N 1.31917 * 121.71918 * 359.75469 * 19 18 17 22 22 C 1.32334 * 120.80529 * 359.97438 * 21 19 18 23 23 C 1.52955 * 109.82147 * 63.58733 * 10 9 8 24 24 C 1.51269 * 120.85254 * 0.02562 * 7 2 1 25 25 H 0.96999 * 120.00064 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.61868 * 111.64115 * 8 7 2 27 27 H 1.08999 * 109.64238 * 351.06564 * 8 7 2 28 28 H 1.09002 * 109.48487 * 185.40713 * 9 8 7 29 29 H 1.08999 * 109.47961 * 65.37964 * 9 8 7 30 30 H 0.97000 * 120.00157 * 325.00194 * 12 10 9 31 31 H 1.07995 * 120.44268 * 359.97334 * 17 16 13 32 32 H 1.07998 * 120.44243 * 179.97438 * 22 21 19 33 33 H 1.09004 * 109.47741 * 56.38109 * 23 10 9 34 34 H 1.08995 * 109.48464 * 176.40608 * 23 10 9 35 35 H 1.09008 * 109.62116 * 8.92284 * 24 7 2 36 36 H 1.08990 * 109.78337 * 248.45009 * 24 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6526 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 6 3.5170 -1.2162 0.0000 9 6 3.9904 -2.1314 -1.1342 10 6 3.3397 -3.5073 -0.9825 11 1 3.5739 -3.9123 0.0021 12 7 3.8580 -4.4077 -2.0152 13 16 4.0810 -6.0136 -1.6778 14 8 4.5535 -6.6136 -2.8761 15 8 4.7905 -6.0705 -0.4479 16 6 2.4911 -6.7070 -1.3675 17 6 1.9664 -6.7325 -0.0850 18 7 0.7670 -7.2565 0.1098 19 6 0.0779 -7.7593 -0.8966 20 17 -1.4886 -8.4423 -0.5909 21 7 0.5483 -7.7569 -2.1291 22 6 1.7382 -7.2448 -2.3994 23 6 1.8226 -3.3830 -1.1332 24 6 1.2677 -2.5152 0.0005 25 1 -0.4850 0.8400 0.0004 26 1 3.8778 -1.5995 0.9544 27 1 3.8981 -0.2076 -0.1603 28 1 5.0745 -2.2350 -1.0894 29 1 3.7060 -1.6985 -2.0933 30 1 4.0708 -4.0633 -2.8967 31 1 2.5273 -6.3267 0.7439 32 1 2.1177 -7.2463 -3.4104 33 1 1.5894 -2.9204 -2.0922 34 1 1.3704 -4.3736 -1.0879 35 1 0.2036 -2.3409 -0.1592 36 1 1.4167 -3.0206 0.9546 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185059216.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:03:00 Heat of formation + Delta-G solvation = -62.226471 kcal Electronic energy + Delta-G solvation = -24441.459067 eV Core-core repulsion = 20691.416875 eV Total energy + Delta-G solvation = -3750.042192 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.38633 -39.21761 -38.38994 -38.27442 -37.08663 -35.43603 -35.33288 -33.55142 -33.06534 -31.41783 -28.65129 -26.27245 -26.12877 -23.91434 -23.27999 -21.36783 -20.73698 -19.51892 -19.38154 -19.03020 -18.42996 -17.88327 -17.04750 -16.67561 -16.34070 -15.94158 -15.65158 -15.07979 -14.98705 -14.76497 -14.21533 -14.08797 -14.04286 -13.98445 -13.36898 -13.35917 -13.25612 -13.02474 -12.88515 -12.79403 -12.69570 -12.50531 -12.39963 -12.06617 -11.85596 -11.78723 -11.40591 -11.28118 -10.96731 -10.87708 -10.74585 -10.50893 -10.14848 -8.13823 -6.07864 -1.19083 -0.75282 -0.39351 0.01874 1.41864 1.46563 1.53986 1.77036 2.07982 2.44218 2.56314 2.58820 2.99194 3.13407 3.15534 3.24722 3.68501 3.90679 4.20633 4.22942 4.42263 4.46129 4.65031 4.77525 4.91286 5.03500 5.09335 5.21140 5.23874 5.34180 5.47526 5.65163 5.68171 5.79306 5.86860 6.14811 6.28313 6.37014 6.99814 7.50755 8.96995 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012969 B = 0.004451 C = 0.003516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.441876 B = 6289.002678 C = 7962.459793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.020 3.980 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.300 1.300 6 H -0.249 1.249 7 C -0.496 4.496 8 C -0.022 4.022 9 C -0.106 4.106 10 C 0.162 3.838 11 H 0.090 0.910 12 N -1.096 6.096 13 S 2.734 3.266 14 O -0.963 6.963 15 O -0.966 6.966 16 C -0.793 4.793 17 C 0.265 3.735 18 N -0.530 5.530 19 C 0.394 3.606 20 Cl 0.048 6.952 21 N -0.527 5.527 22 C 0.269 3.731 23 C -0.112 4.112 24 C 0.007 3.993 25 H 0.260 0.740 26 H 0.028 0.972 27 H 0.036 0.964 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.431 0.569 31 H 0.210 0.790 32 H 0.226 0.774 33 H 0.051 0.949 34 H 0.037 0.963 35 H 0.020 0.980 36 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 -13.570 -5.133 15.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.178 4.178 3 Si 0.767 3.233 4 H -0.199 1.199 5 H -0.227 1.227 6 H -0.173 1.173 7 C -0.515 4.515 8 C -0.060 4.060 9 C -0.146 4.146 10 C 0.056 3.944 11 H 0.108 0.892 12 N -0.858 5.858 13 S 2.817 3.183 14 O -0.953 6.953 15 O -0.956 6.956 16 C -0.881 4.881 17 C 0.099 3.901 18 N -0.248 5.248 19 C 0.102 3.898 20 Cl 0.076 6.924 21 N -0.245 5.245 22 C 0.103 3.897 23 C -0.152 4.152 24 C -0.032 4.032 25 H 0.069 0.931 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.268 0.732 31 H 0.227 0.773 32 H 0.243 0.757 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.038 0.962 36 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 5.321 -14.483 -4.723 16.136 hybrid contribution -0.584 1.479 -0.196 1.602 sum 4.737 -13.004 -4.919 14.688 Atomic orbital electron populations 1.69989 1.07855 1.27320 1.52266 1.25623 0.95232 1.01889 0.95039 0.85820 0.79324 0.79605 0.78590 1.19885 1.22745 1.17333 1.20654 0.91455 0.91501 1.47890 1.19810 0.94235 0.96445 0.95532 1.21752 0.99128 0.93524 1.00182 1.20726 0.92716 0.91238 0.89716 0.89221 1.55396 1.81584 1.24874 1.23938 1.00939 0.72150 0.72092 0.73074 1.93583 1.78482 1.76117 1.47071 1.93595 1.68707 1.86432 1.46830 1.33041 1.30116 1.21438 1.03495 1.23483 0.87681 0.83185 0.95770 1.68132 1.08536 1.13131 1.34964 1.23712 0.90793 0.89051 0.86233 1.98464 1.18062 1.80585 1.95276 1.68154 1.15449 1.20192 1.20677 1.23634 0.84937 0.80770 1.00390 1.21959 0.95115 0.97707 1.00370 1.19295 0.96849 0.93790 0.93228 0.93056 0.95405 0.94564 0.90720 0.91931 0.73167 0.77328 0.75747 0.92984 0.94433 0.96159 0.97735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.12 12.73 21.45 0.27 -52.85 16 2 C 0.02 1.04 5.46 84.65 0.46 1.51 16 3 Si 0.94 40.87 27.27 68.60 1.87 42.74 16 4 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 6 H -0.25 -10.04 6.46 99.48 0.64 -9.40 16 7 C -0.50 -23.85 5.52 -16.17 -0.09 -23.94 16 8 C -0.02 -0.87 5.59 30.11 0.17 -0.70 16 9 C -0.11 -3.33 5.46 30.66 0.17 -3.16 16 10 C 0.16 4.74 2.69 44.96 0.12 4.86 16 11 H 0.09 2.59 7.50 -2.38 -0.02 2.57 16 12 N -1.10 -23.76 5.46 -169.51 -0.93 -24.69 16 13 S 2.73 59.70 5.74 -56.49 -0.32 59.38 16 14 O -0.96 -22.58 17.38 -128.00 -2.22 -24.81 16 15 O -0.97 -25.83 16.71 -128.00 -2.14 -27.97 16 16 C -0.79 -17.62 4.97 22.44 0.11 -17.51 16 17 C 0.27 6.50 9.94 84.70 0.84 7.34 16 18 N -0.53 -14.64 10.41 -190.72 -1.98 -16.63 16 19 C 0.39 10.53 8.18 180.81 1.48 12.01 16 20 Cl 0.05 1.11 29.27 -2.72 -0.08 1.03 16 21 N -0.53 -13.16 10.41 -190.72 -1.98 -15.15 16 22 C 0.27 5.65 10.80 84.70 0.92 6.56 16 23 C -0.11 -3.95 5.53 30.64 0.17 -3.78 16 24 C 0.01 0.30 5.97 30.09 0.18 0.48 16 25 H 0.26 14.24 8.31 -92.71 -0.77 13.47 16 26 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 27 H 0.04 1.42 4.78 -2.39 -0.01 1.40 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.43 7.27 8.83 -96.75 -0.85 6.41 16 31 H 0.21 4.32 7.71 -2.91 -0.02 4.30 16 32 H 0.23 3.09 7.72 -2.91 -0.02 3.06 16 33 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 34 H 0.04 1.19 6.11 -2.39 -0.01 1.18 16 35 H 0.02 1.06 7.07 -2.38 -0.02 1.05 16 36 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 Total: -1.00 -65.05 324.92 -2.76 -67.82 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.23 Total: 7.43 kcal Atomic # 6 Polarization: -20.84 SS G_CDS: 4.53 Total: -16.31 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -4.62 Total: -109.31 kcal Atomic # 8 Polarization: -48.41 SS G_CDS: -4.36 Total: -52.78 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.87 Total: 42.74 kcal Atomic # 16 Polarization: 59.70 SS G_CDS: -0.32 Total: 59.38 kcal Atomic # 17 Polarization: 1.11 SS G_CDS: -0.08 Total: 1.03 kcal Total: -65.05 -2.76 -67.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185059216.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.590 kcal (2) G-P(sol) polarization free energy of solvation -65.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds