Wall clock time and date at job start Tue Mar 31 2020 16:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00367 * 2 1 4 4 H 1.48492 * 109.47291 * 272.62268 * 3 2 1 5 5 H 1.48504 * 109.46736 * 32.61810 * 3 2 1 6 6 H 1.48494 * 109.47062 * 152.61542 * 3 2 1 7 7 C 1.37880 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00062 * 6.90010 * 7 2 1 9 9 C 1.50700 * 119.99720 * 186.90700 * 7 2 1 10 10 N 1.46501 * 110.02062 * 60.67210 * 9 7 2 11 11 S 1.65599 * 119.99725 * 53.33056 * 10 9 7 12 12 O 1.42102 * 106.39981 * 179.17009 * 11 10 9 13 13 O 1.42104 * 106.40064 * 312.08703 * 11 10 9 14 14 C 1.76198 * 107.21792 * 65.62801 * 11 10 9 15 15 C 1.38592 * 120.78355 * 263.22921 * 14 11 10 16 16 N 1.32326 * 119.11843 * 179.74773 * 15 14 11 17 17 C 1.31929 * 120.80515 * 0.56249 * 16 15 14 18 18 Cl 1.73601 * 119.13949 * 179.70564 * 17 16 15 19 19 N 1.31920 * 121.71750 * 359.69264 * 17 16 15 20 20 C 1.32332 * 120.80200 * 0.02562 * 19 17 16 21 21 C 1.54270 * 110.07349 * 182.09358 * 9 7 2 22 22 C 1.54887 * 104.19588 * 95.69405 * 21 9 7 23 23 C 1.54883 * 102.75328 * 37.94322 * 22 21 9 24 24 C 1.53876 * 110.03325 * 299.27900 * 9 7 2 25 25 H 0.96993 * 119.99699 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99979 * 233.05495 * 10 9 7 27 27 H 1.08000 * 120.44479 * 0.02868 * 15 14 11 28 28 H 1.08000 * 120.43554 * 180.02562 * 20 19 17 29 29 H 1.08993 * 110.48568 * 214.37391 * 21 9 7 30 30 H 1.09004 * 110.48478 * 337.01533 * 21 9 7 31 31 H 1.09005 * 110.75798 * 279.62545 * 22 21 9 32 32 H 1.09000 * 110.91438 * 156.33532 * 22 21 9 33 33 H 1.09000 * 110.48945 * 203.37986 * 23 22 21 34 34 H 1.09003 * 110.48608 * 80.73183 * 23 22 21 35 35 H 1.09005 * 110.03276 * 359.95404 * 24 9 7 36 36 H 1.09004 * 110.03499 * 121.37945 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4413 2.0784 -1.3985 5 1 1.4755 2.6360 0.7547 6 1 3.5733 1.4247 0.6440 7 6 2.0045 -1.1941 -0.0005 8 1 1.4703 -2.1259 -0.1133 9 6 3.5033 -1.1989 0.1564 10 7 3.8750 -0.6003 1.4408 11 16 3.2021 -1.1667 2.8439 12 8 3.7729 -0.4046 3.8988 13 8 1.8023 -1.2482 2.6133 14 6 3.7675 -2.8211 3.0628 15 6 2.9893 -3.8955 2.6619 16 7 3.4484 -5.1241 2.8374 17 6 4.6253 -5.3322 3.3959 18 17 5.1820 -6.9623 3.6122 19 7 5.3903 -4.3339 3.7941 20 6 4.9983 -3.0788 3.6455 21 6 4.0399 -2.6428 0.0713 22 6 4.4662 -2.8029 -1.4091 23 6 5.0674 -1.4153 -1.7438 24 6 4.1567 -0.4186 -0.9976 25 1 -0.4849 0.8400 -0.0004 26 1 4.5183 0.1252 1.4697 27 1 2.0230 -3.7321 2.2081 28 1 5.6295 -2.2660 3.9732 29 1 4.8979 -2.7704 0.7313 30 1 3.2553 -3.3568 0.3218 31 1 3.6019 -3.0117 -2.0396 32 1 5.2177 -3.5853 -1.5152 33 1 5.0327 -1.2335 -2.8180 34 1 6.0914 -1.3447 -1.3769 35 1 3.3897 -0.0370 -1.6717 36 1 4.7503 0.4057 -0.6021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185079828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:49 Heat of formation + Delta-G solvation = -9.341414 kcal Electronic energy + Delta-G solvation = -25564.402769 eV Core-core repulsion = 21816.653845 eV Total energy + Delta-G solvation = -3747.748924 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.12074 -38.33169 -37.14504 -36.47125 -35.02830 -34.04700 -33.11007 -32.25481 -32.00026 -28.31361 -27.50475 -24.96287 -24.78189 -23.96604 -20.49303 -19.59428 -18.96549 -18.23397 -18.01970 -17.58491 -16.58618 -16.50419 -15.43193 -15.29485 -14.85750 -14.43904 -14.39755 -14.13046 -13.77263 -13.12012 -12.75681 -12.58471 -12.41024 -12.20179 -11.94676 -11.72811 -11.59096 -11.33371 -11.21346 -11.15376 -11.08531 -10.75193 -10.55739 -10.54883 -10.39309 -10.04871 -10.02757 -9.94486 -9.85721 -9.61098 -9.32098 -8.61877 -8.34988 -6.21012 -4.20957 0.17322 0.83743 0.96824 1.22713 3.16316 3.23784 3.28215 3.34476 3.73760 3.82137 4.30506 4.35647 4.42964 4.47610 4.53180 5.02398 5.24213 5.32487 5.40460 5.42773 5.63350 5.89493 5.92777 6.08471 6.13189 6.20787 6.25894 6.33891 6.39874 6.46552 6.57827 6.65317 6.83236 6.99482 7.52874 7.53856 7.87337 8.31833 8.84081 9.41715 10.90446 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.005455 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.873090 B = 5131.629066 C = 5740.321875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.103 3.897 3 Si 0.860 3.140 4 H -0.280 1.280 5 H -0.294 1.294 6 H -0.247 1.247 7 C -0.509 4.509 8 H 0.087 0.913 9 C 0.265 3.735 10 N -1.096 6.096 11 S 2.674 3.326 12 O -0.989 6.989 13 O -0.897 6.897 14 C -0.777 4.777 15 C 0.274 3.726 16 N -0.517 5.517 17 C 0.395 3.605 18 Cl 0.026 6.974 19 N -0.523 5.523 20 C 0.255 3.745 21 C -0.132 4.132 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.126 4.126 25 H 0.266 0.734 26 H 0.398 0.602 27 H 0.204 0.796 28 H 0.188 0.812 29 H 0.045 0.955 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.054 0.946 35 H 0.079 0.921 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.566 -6.021 2.148 12.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.106 4.106 3 Si 0.688 3.312 4 H -0.207 1.207 5 H -0.221 1.221 6 H -0.172 1.172 7 C -0.551 4.551 8 H 0.105 0.895 9 C 0.181 3.819 10 N -0.858 5.858 11 S 2.757 3.243 12 O -0.978 6.978 13 O -0.886 6.886 14 C -0.860 4.860 15 C 0.108 3.892 16 N -0.234 5.234 17 C 0.102 3.898 18 Cl 0.054 6.946 19 N -0.240 5.240 20 C 0.089 3.911 21 C -0.171 4.171 22 C -0.150 4.150 23 C -0.156 4.156 24 C -0.166 4.166 25 H 0.076 0.924 26 H 0.233 0.767 27 H 0.220 0.780 28 H 0.205 0.795 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.120 -6.810 2.924 12.544 hybrid contribution 0.926 1.268 -0.191 1.582 sum 11.046 -5.542 2.733 12.657 Atomic orbital electron populations 1.69890 1.06509 1.27246 1.45478 1.24861 0.94344 0.98818 0.92547 0.87439 0.81282 0.84126 0.78334 1.20659 1.22080 1.17162 1.21044 0.87452 0.95513 1.51056 0.89499 1.18963 0.95652 0.87903 0.79398 1.57183 1.60429 1.47081 1.21121 1.03568 0.75273 0.72577 0.72858 1.93512 1.80342 1.68387 1.55607 1.93769 1.26654 1.84254 1.83943 1.33579 1.07622 1.30215 1.14613 1.23301 0.97778 0.84429 0.83651 1.68114 1.13622 1.25522 1.16158 1.23294 0.87306 0.89492 0.89723 1.98440 1.88008 1.13518 1.94666 1.67985 1.35237 0.99956 1.20858 1.22946 0.90576 0.93140 0.84463 1.22985 0.98913 0.98563 0.96690 1.22311 0.99951 0.96192 0.96580 1.22286 0.98158 0.95651 0.99515 1.22749 0.98291 0.97493 0.98080 0.92399 0.76675 0.77955 0.79498 0.93626 0.91579 0.90762 0.93013 0.92290 0.92694 0.90237 0.92839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.03 13.96 55.43 0.77 -23.26 16 2 C 0.10 2.63 4.76 -17.82 -0.08 2.55 16 3 Si 0.86 19.31 24.00 -169.99 -4.08 15.23 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.25 -4.81 3.98 56.52 0.22 -4.59 16 7 C -0.51 -11.98 6.34 -34.44 -0.22 -12.20 16 8 H 0.09 2.24 7.76 -52.49 -0.41 1.83 16 9 C 0.26 5.01 0.58 -131.85 -0.08 4.93 16 10 N -1.10 -19.71 3.70 0.51 0.00 -19.71 16 11 S 2.67 49.87 5.71 -107.50 -0.61 49.25 16 12 O -0.99 -19.33 17.56 -57.17 -1.00 -20.33 16 13 O -0.90 -20.19 14.30 -57.17 -0.82 -21.01 16 14 C -0.78 -12.37 4.05 -39.32 -0.16 -12.53 16 15 C 0.27 4.39 8.57 -17.21 -0.15 4.25 16 16 N -0.52 -8.18 10.41 -11.63 -0.12 -8.30 16 17 C 0.39 5.94 8.18 -91.93 -0.75 5.19 16 18 Cl 0.03 0.32 29.27 -51.86 -1.52 -1.20 16 19 N -0.52 -7.79 10.41 -11.63 -0.12 -7.92 16 20 C 0.26 3.67 10.81 -17.21 -0.19 3.48 16 21 C -0.13 -2.20 4.26 -25.07 -0.11 -2.30 16 22 C -0.11 -1.69 6.91 -24.74 -0.17 -1.86 16 23 C -0.12 -1.72 6.83 -25.08 -0.17 -1.89 16 24 C -0.13 -2.20 4.17 -25.61 -0.11 -2.31 16 25 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 26 H 0.40 6.36 6.86 -34.47 -0.24 6.13 16 27 H 0.20 3.21 7.55 -52.49 -0.40 2.81 16 28 H 0.19 2.18 7.87 -52.49 -0.41 1.76 16 29 H 0.05 0.70 7.21 -51.93 -0.37 0.33 16 30 H 0.07 1.13 5.87 -51.93 -0.30 0.83 16 31 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 1.53 5.97 -51.93 -0.31 1.22 16 36 H 0.05 0.87 6.27 -51.93 -0.33 0.54 16 LS Contribution 309.18 15.07 4.66 4.66 Total: -1.00 -29.52 309.18 -8.79 -38.31 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -3.77 Total: 6.98 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -2.18 Total: -12.70 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: 0.53 Total: -59.19 kcal Atomic # 8 Polarization: -39.52 SS G_CDS: -1.82 Total: -41.34 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.08 Total: 15.23 kcal Atomic # 16 Polarization: 49.87 SS G_CDS: -0.61 Total: 49.25 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.52 Total: -1.20 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -29.52 -8.79 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185079828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.967 kcal (2) G-P(sol) polarization free energy of solvation -29.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds