Wall clock time and date at job start Tue Mar 31 2020 16:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00367 * 2 1 4 4 H 1.48492 * 109.47291 * 272.62268 * 3 2 1 5 5 H 1.48504 * 109.46736 * 32.61810 * 3 2 1 6 6 H 1.48494 * 109.47062 * 152.61542 * 3 2 1 7 7 C 1.37880 * 119.99629 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00062 * 6.90010 * 7 2 1 9 9 C 1.50700 * 119.99720 * 186.90700 * 7 2 1 10 10 N 1.46501 * 110.02062 * 60.67210 * 9 7 2 11 11 S 1.65599 * 119.99725 * 53.33056 * 10 9 7 12 12 O 1.42102 * 106.39981 * 179.17009 * 11 10 9 13 13 O 1.42104 * 106.40064 * 312.08703 * 11 10 9 14 14 C 1.76198 * 107.21792 * 65.62801 * 11 10 9 15 15 C 1.38592 * 120.78355 * 263.22921 * 14 11 10 16 16 N 1.32326 * 119.11843 * 179.74773 * 15 14 11 17 17 C 1.31929 * 120.80515 * 0.56249 * 16 15 14 18 18 Cl 1.73601 * 119.13949 * 179.70564 * 17 16 15 19 19 N 1.31920 * 121.71750 * 359.69264 * 17 16 15 20 20 C 1.32332 * 120.80200 * 0.02562 * 19 17 16 21 21 C 1.54270 * 110.07349 * 182.09358 * 9 7 2 22 22 C 1.54887 * 104.19588 * 95.69405 * 21 9 7 23 23 C 1.54883 * 102.75328 * 37.94322 * 22 21 9 24 24 C 1.53876 * 110.03325 * 299.27900 * 9 7 2 25 25 H 0.96993 * 119.99699 * 0.02562 * 1 2 3 26 26 H 0.96996 * 119.99979 * 233.05495 * 10 9 7 27 27 H 1.08000 * 120.44479 * 0.02868 * 15 14 11 28 28 H 1.08000 * 120.43554 * 180.02562 * 20 19 17 29 29 H 1.08993 * 110.48568 * 214.37391 * 21 9 7 30 30 H 1.09004 * 110.48478 * 337.01533 * 21 9 7 31 31 H 1.09005 * 110.75798 * 279.62545 * 22 21 9 32 32 H 1.09000 * 110.91438 * 156.33532 * 22 21 9 33 33 H 1.09000 * 110.48945 * 203.37986 * 23 22 21 34 34 H 1.09003 * 110.48608 * 80.73183 * 23 22 21 35 35 H 1.09005 * 110.03276 * 359.95404 * 24 9 7 36 36 H 1.09004 * 110.03499 * 121.37945 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4413 2.0784 -1.3985 5 1 1.4755 2.6360 0.7547 6 1 3.5733 1.4247 0.6440 7 6 2.0045 -1.1941 -0.0005 8 1 1.4703 -2.1259 -0.1133 9 6 3.5033 -1.1989 0.1564 10 7 3.8750 -0.6003 1.4408 11 16 3.2021 -1.1667 2.8439 12 8 3.7729 -0.4046 3.8988 13 8 1.8023 -1.2482 2.6133 14 6 3.7675 -2.8211 3.0628 15 6 2.9893 -3.8955 2.6619 16 7 3.4484 -5.1241 2.8374 17 6 4.6253 -5.3322 3.3959 18 17 5.1820 -6.9623 3.6122 19 7 5.3903 -4.3339 3.7941 20 6 4.9983 -3.0788 3.6455 21 6 4.0399 -2.6428 0.0713 22 6 4.4662 -2.8029 -1.4091 23 6 5.0674 -1.4153 -1.7438 24 6 4.1567 -0.4186 -0.9976 25 1 -0.4849 0.8400 -0.0004 26 1 4.5183 0.1252 1.4697 27 1 2.0230 -3.7321 2.2081 28 1 5.6295 -2.2660 3.9732 29 1 4.8979 -2.7704 0.7313 30 1 3.2553 -3.3568 0.3218 31 1 3.6019 -3.0117 -2.0396 32 1 5.2177 -3.5853 -1.5152 33 1 5.0327 -1.2335 -2.8180 34 1 6.0914 -1.3447 -1.3769 35 1 3.3897 -0.0370 -1.6717 36 1 4.7503 0.4057 -0.6021 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185079828.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:48 Heat of formation + Delta-G solvation = -32.173958 kcal Electronic energy + Delta-G solvation = -25565.392862 eV Core-core repulsion = 21816.653845 eV Total energy + Delta-G solvation = -3748.739018 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.33877 -39.77025 -38.23209 -38.06715 -36.68427 -35.26660 -34.65161 -33.80163 -33.46500 -29.62792 -29.11269 -26.18638 -26.04107 -25.59232 -21.77594 -21.11020 -20.46566 -19.45494 -19.25588 -19.12700 -18.16776 -18.06909 -16.83299 -16.58581 -16.53599 -15.83452 -15.62075 -15.55588 -14.99944 -14.79554 -14.21481 -14.01591 -13.84221 -13.49947 -13.30558 -13.18096 -12.91326 -12.87863 -12.74040 -12.71433 -12.38552 -12.26361 -12.11986 -11.83519 -11.80209 -11.52864 -11.48667 -11.25731 -11.10879 -11.01811 -10.81716 -10.51889 -9.91836 -8.14419 -6.16031 -1.07508 -0.49438 -0.36992 0.05817 1.38793 1.40695 1.51374 1.99960 2.28199 2.46412 2.61922 2.85799 3.19698 3.22963 3.27909 3.32814 3.89254 3.99333 4.03498 4.16518 4.36777 4.62896 4.68956 4.70264 4.83555 4.93327 4.99501 5.02871 5.21212 5.21817 5.25409 5.33785 5.51767 5.66193 5.81774 6.32984 6.39978 6.49594 6.90815 7.51594 9.01755 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.016977 B = 0.005455 C = 0.004877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.873090 B = 5131.629066 C = 5740.321875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.050 3.950 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.317 1.317 6 H -0.199 1.199 7 C -0.500 4.500 8 H 0.048 0.952 9 C 0.266 3.734 10 N -1.095 6.095 11 S 2.696 3.304 12 O -0.993 6.993 13 O -0.942 6.942 14 C -0.779 4.779 15 C 0.273 3.727 16 N -0.527 5.527 17 C 0.391 3.609 18 Cl 0.051 6.949 19 N -0.522 5.522 20 C 0.266 3.734 21 C -0.130 4.130 22 C -0.112 4.112 23 C -0.109 4.109 24 C -0.133 4.133 25 H 0.258 0.742 26 H 0.414 0.586 27 H 0.194 0.806 28 H 0.221 0.779 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.056 0.944 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.796 -6.556 2.624 16.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.151 4.151 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.246 1.246 6 H -0.121 1.121 7 C -0.540 4.540 8 H 0.066 0.934 9 C 0.181 3.819 10 N -0.859 5.859 11 S 2.782 3.218 12 O -0.983 6.983 13 O -0.932 6.932 14 C -0.866 4.866 15 C 0.107 3.893 16 N -0.244 5.244 17 C 0.099 3.901 18 Cl 0.079 6.921 19 N -0.239 5.239 20 C 0.100 3.900 21 C -0.169 4.169 22 C -0.150 4.150 23 C -0.147 4.147 24 C -0.173 4.173 25 H 0.067 0.933 26 H 0.252 0.748 27 H 0.211 0.789 28 H 0.237 0.763 29 H 0.084 0.916 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.090 0.910 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 14.375 -7.320 3.359 16.478 hybrid contribution -0.310 1.194 -0.220 1.253 sum 14.065 -6.127 3.139 15.659 Atomic orbital electron populations 1.70055 1.08527 1.27248 1.50297 1.25541 0.94658 1.02067 0.92880 0.86940 0.82242 0.80173 0.78901 1.19774 1.24624 1.12075 1.21167 0.90063 0.93424 1.49333 0.93404 1.18881 0.92878 0.90172 0.80001 1.56517 1.60598 1.47926 1.20886 1.02158 0.74172 0.73003 0.72509 1.93509 1.80143 1.69141 1.55462 1.93745 1.29495 1.85435 1.84529 1.33025 1.08848 1.28007 1.16762 1.23199 0.97634 0.84919 0.83536 1.68160 1.14273 1.25141 1.16853 1.23694 0.86966 0.90721 0.88762 1.98453 1.87597 1.11675 1.94348 1.68145 1.34934 0.99969 1.20862 1.23488 0.89850 0.93905 0.82788 1.22933 0.99123 0.96343 0.98543 1.22330 1.00172 0.97682 0.94854 1.22273 0.98618 0.93701 1.00114 1.22746 0.98524 0.98800 0.97255 0.93307 0.74814 0.78937 0.76305 0.91570 0.92996 0.92323 0.90486 0.90956 0.89965 0.92488 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.29 13.96 21.45 0.30 -54.99 16 2 C 0.05 2.66 4.76 84.65 0.40 3.07 16 3 Si 0.89 39.46 24.00 68.60 1.65 41.10 16 4 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 5 H -0.32 -15.26 7.11 99.48 0.71 -14.56 16 6 H -0.20 -7.04 3.98 99.48 0.40 -6.64 16 7 C -0.50 -24.25 6.34 25.60 0.16 -24.09 16 8 H 0.05 2.63 7.76 -2.91 -0.02 2.61 16 9 C 0.27 9.66 0.58 3.58 0.00 9.66 16 10 N -1.10 -36.69 3.70 -152.29 -0.56 -37.25 16 11 S 2.70 96.97 5.71 -56.49 -0.32 96.64 16 12 O -0.99 -36.33 17.56 -128.00 -2.25 -38.58 16 13 O -0.94 -43.45 14.30 -128.00 -1.83 -45.28 16 14 C -0.78 -23.28 4.05 22.44 0.09 -23.19 16 15 C 0.27 8.57 8.57 84.70 0.73 9.29 16 16 N -0.53 -15.90 10.41 -190.72 -1.98 -17.88 16 17 C 0.39 10.76 8.18 180.81 1.48 12.23 16 18 Cl 0.05 1.14 29.27 -2.72 -0.08 1.06 16 19 N -0.52 -13.76 10.41 -190.72 -1.98 -15.74 16 20 C 0.27 6.71 10.81 84.70 0.92 7.63 16 21 C -0.13 -4.06 4.26 31.67 0.13 -3.92 16 22 C -0.11 -3.07 6.91 31.88 0.22 -2.85 16 23 C -0.11 -2.74 6.83 31.67 0.22 -2.52 16 24 C -0.13 -4.28 4.17 31.32 0.13 -4.15 16 25 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 26 H 0.41 11.52 6.86 -96.75 -0.66 10.86 16 27 H 0.19 6.38 7.55 -2.91 -0.02 6.36 16 28 H 0.22 4.03 7.87 -2.91 -0.02 4.01 16 29 H 0.07 1.79 7.21 -2.39 -0.02 1.77 16 30 H 0.05 1.76 5.87 -2.39 -0.01 1.75 16 31 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 32 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.06 2.11 5.97 -2.38 -0.01 2.10 16 36 H 0.07 2.07 6.27 -2.39 -0.01 2.05 16 Total: -1.00 -67.04 309.18 -2.42 -69.45 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.17 Total: 20.32 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 4.48 Total: -18.85 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -4.23 Total: -125.86 kcal Atomic # 8 Polarization: -79.78 SS G_CDS: -4.08 Total: -83.86 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 1.65 Total: 41.10 kcal Atomic # 16 Polarization: 96.97 SS G_CDS: -0.32 Total: 96.64 kcal Atomic # 17 Polarization: 1.14 SS G_CDS: -0.08 Total: 1.06 kcal Total: -67.04 -2.42 -69.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185079828.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.281 kcal (2) G-P(sol) polarization free energy of solvation -67.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds