Wall clock time and date at job start Tue Mar 31 2020 16:33:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47092 * 291.75012 * 3 2 1 5 5 N 1.46502 * 109.47000 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99909 * 275.00017 * 5 4 3 7 7 C 1.50702 * 109.47036 * 275.00111 * 6 5 4 8 8 H 1.08008 * 120.00093 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00257 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00275 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99539 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46986 * 90.00009 * 11 9 7 13 13 H 1.48503 * 109.46749 * 209.99692 * 11 9 7 14 14 H 1.48492 * 109.47349 * 329.99982 * 11 9 7 15 15 S 1.65597 * 119.99551 * 95.00264 * 5 4 3 16 16 O 1.42100 * 106.40812 * 336.45445 * 15 5 4 17 17 O 1.42102 * 106.39708 * 203.53773 * 15 5 4 18 18 C 1.76199 * 107.21857 * 90.00075 * 15 5 4 19 19 N 1.31856 * 119.61009 * 330.01324 * 18 15 5 20 20 C 1.31833 * 121.77727 * 179.97438 * 19 18 15 21 21 C 1.38470 * 120.78046 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.43091 * 180.02562 * 21 20 19 23 23 C 1.38795 * 119.13991 * 359.97438 * 21 20 19 24 24 C 1.38435 * 119.60726 * 149.99532 * 18 15 5 25 25 F 1.35106 * 120.43164 * 359.74979 * 24 18 15 26 26 H 1.09001 * 109.46721 * 171.75229 * 3 2 1 27 27 H 1.08991 * 109.47606 * 51.75146 * 3 2 1 28 28 H 1.08995 * 109.47131 * 60.00030 * 4 3 2 29 29 H 1.09000 * 109.46714 * 300.00479 * 4 3 2 30 30 H 1.08995 * 109.47096 * 34.99782 * 6 5 4 31 31 H 1.08992 * 109.47140 * 155.00341 * 6 5 4 32 32 H 0.97003 * 119.99901 * 180.02562 * 10 9 7 33 33 H 1.07997 * 119.60916 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.81081 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5337 1.3399 5 7 4.5833 -0.5324 1.3401 6 6 5.3168 -1.6647 0.7690 7 6 5.4614 -2.7456 1.8091 8 1 5.0479 -2.6035 2.7967 9 6 6.1207 -3.9163 1.4997 10 7 6.2474 -4.8593 2.4075 11 14 6.8353 -4.1622 -0.2087 12 1 8.2322 -3.6592 -0.2380 13 1 6.8226 -5.6082 -0.5470 14 1 6.0192 -3.4150 -1.1989 15 16 5.4100 0.7488 1.9860 16 8 4.5274 1.8615 1.9375 17 8 6.6930 0.7474 1.3751 18 6 5.6708 0.3946 3.6921 19 7 4.7974 -0.3473 4.3444 20 6 4.9505 -0.6391 5.6209 21 6 6.0451 -0.1714 6.3284 22 9 6.1952 -0.4752 7.6363 23 6 6.9865 0.6127 5.6763 24 6 6.7905 0.8981 4.3318 25 9 7.6837 1.6529 3.6552 26 1 2.9708 1.0179 -0.1474 27 1 2.9717 -0.6353 -0.8070 28 1 2.7554 -1.5508 1.4873 29 1 2.7545 0.1024 2.1469 30 1 4.7699 -2.0565 -0.0886 31 1 6.3048 -1.3335 0.4494 32 1 6.7116 -5.6828 2.1899 33 1 4.2131 -1.2495 6.1209 34 1 7.8507 0.9915 6.2019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190163415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:36 Heat of formation + Delta-G solvation = -86.211037 kcal Electronic energy + Delta-G solvation = -26519.199415 eV Core-core repulsion = 22216.320493 eV Total energy + Delta-G solvation = -4302.878921 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.42772 -49.40054 -40.02301 -37.30238 -36.94149 -35.83797 -35.65665 -32.77822 -32.64204 -31.09142 -30.94721 -27.63932 -24.75187 -24.00580 -23.77767 -21.94197 -19.30977 -18.55216 -18.40063 -17.86915 -17.56268 -16.86740 -16.80252 -16.51951 -16.19636 -15.86732 -15.61587 -15.10798 -14.77006 -14.61397 -14.49326 -13.94449 -13.69842 -13.53765 -13.40768 -13.01978 -12.75321 -12.58205 -12.44347 -12.20744 -11.97747 -11.88405 -11.64168 -11.48505 -11.45391 -11.08823 -10.68360 -10.58858 -10.29327 -10.13184 -10.04585 -9.65077 -9.36862 -8.72026 -8.41217 -6.22216 -4.23849 0.15439 0.59418 0.64640 2.79169 2.93270 2.97979 3.06206 3.21991 3.27839 3.31510 3.37891 3.64441 3.80070 4.05864 4.26628 4.28721 4.33896 4.63634 4.83447 4.94424 5.06443 5.13034 5.19453 5.22758 5.47715 5.58334 5.61812 6.10226 6.14279 6.27429 6.67285 6.88114 7.09567 7.24947 7.42469 7.68941 8.32773 8.85256 9.37550 10.89993 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.006304 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.881593 B = 4440.384786 C = 5845.662236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.447 5.447 2 C 0.222 3.778 3 C -0.054 4.054 4 C 0.138 3.862 5 N -0.956 5.956 6 C 0.208 3.792 7 C -0.548 4.548 8 H 0.089 0.911 9 C 0.077 3.923 10 N -0.892 5.892 11 Si 0.866 3.134 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.261 1.261 15 S 2.697 3.303 16 O -0.953 6.953 17 O -0.934 6.934 18 C -0.466 4.466 19 N -0.327 5.327 20 C 0.058 3.942 21 C 0.127 3.873 22 F -0.115 7.115 23 C -0.163 4.163 24 C 0.162 3.838 25 F -0.103 7.103 26 H 0.112 0.888 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.266 0.734 33 H 0.186 0.814 34 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 10.009 4.222 10.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.096 4.096 3 C -0.096 4.096 4 C 0.010 3.990 5 N -0.794 5.794 6 C 0.085 3.915 7 C -0.587 4.587 8 H 0.107 0.893 9 C -0.126 4.126 10 N -0.529 5.529 11 Si 0.692 3.308 12 H -0.197 1.197 13 H -0.210 1.210 14 H -0.185 1.185 15 S 2.779 3.221 16 O -0.942 6.942 17 O -0.924 6.924 18 C -0.683 4.683 19 N -0.035 5.035 20 C -0.105 4.105 21 C 0.104 3.896 22 F -0.093 7.093 23 C -0.191 4.191 24 C 0.138 3.862 25 F -0.081 7.081 26 H 0.130 0.870 27 H 0.135 0.865 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.202 0.798 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -2.003 10.259 3.421 10.998 hybrid contribution 2.030 -0.573 0.669 2.213 sum 0.026 9.687 4.089 10.514 Atomic orbital electron populations 1.81189 1.13023 1.09479 1.08798 1.28993 0.94994 0.92635 0.92990 1.19905 0.81653 1.05597 1.02467 1.21011 0.79409 1.04123 0.94479 1.56963 1.13521 1.37517 1.71419 1.19811 0.92329 0.83979 0.95380 1.21511 1.37397 0.99704 1.00105 0.89294 1.24851 0.95239 0.95684 0.96862 1.69879 1.42117 1.07081 1.33866 0.87004 0.80648 0.77868 0.85240 1.19739 1.21046 1.18497 1.02397 0.73819 0.73277 0.72575 1.93592 1.65818 1.48963 1.85873 1.93633 1.40066 1.86356 1.72337 1.34292 0.98885 1.07445 1.27691 1.67845 1.24270 1.04195 1.07160 1.23293 0.96821 0.99751 0.90637 1.18693 0.95549 0.95875 0.79434 1.91586 1.95299 1.90741 1.31710 1.21633 1.02001 1.01647 0.93828 1.17881 0.87185 0.90964 0.90136 1.91671 1.65345 1.72017 1.79060 0.86952 0.86474 0.88075 0.89638 0.93360 0.93333 0.92447 0.79750 0.81428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.01 18.54 42.15 0.78 -6.23 16 2 C 0.22 2.93 15.43 -20.76 -0.32 2.61 16 3 C -0.05 -0.62 6.03 -29.51 -0.18 -0.80 16 4 C 0.14 1.92 5.30 -4.04 -0.02 1.90 16 5 N -0.96 -16.23 2.71 -115.66 -0.31 -16.54 16 6 C 0.21 4.16 4.50 -5.19 -0.02 4.14 16 7 C -0.55 -13.31 9.94 -34.44 -0.34 -13.66 16 8 H 0.09 2.29 8.05 -52.48 -0.42 1.87 16 9 C 0.08 2.01 5.47 -17.82 -0.10 1.91 16 10 N -0.89 -24.95 13.96 55.43 0.77 -24.18 16 11 Si 0.87 19.34 27.47 -169.99 -4.67 14.67 16 12 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.26 -5.33 6.54 56.52 0.37 -4.96 16 15 S 2.70 47.15 5.46 -107.50 -0.59 46.57 16 16 O -0.95 -16.37 16.99 -57.17 -0.97 -17.35 16 17 O -0.93 -18.40 15.31 -57.17 -0.88 -19.28 16 18 C -0.47 -7.90 6.77 -17.47 -0.12 -8.02 16 19 N -0.33 -5.28 10.22 -12.34 -0.13 -5.41 16 20 C 0.06 0.78 11.17 -17.47 -0.20 0.59 16 21 C 0.13 1.58 7.34 -39.29 -0.29 1.30 16 22 F -0.12 -1.32 17.28 2.25 0.04 -1.28 16 23 C -0.16 -2.05 10.15 -39.15 -0.40 -2.45 16 24 C 0.16 2.50 7.22 -39.29 -0.28 2.21 16 25 F -0.10 -1.61 15.79 2.25 0.04 -1.57 16 26 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.42 8.11 -51.93 -0.42 1.00 16 29 H 0.09 1.11 7.61 -51.93 -0.40 0.71 16 30 H 0.05 0.89 7.17 -51.93 -0.37 0.52 16 31 H 0.05 1.01 6.34 -51.93 -0.33 0.68 16 32 H 0.27 7.04 8.31 -40.82 -0.34 6.71 16 33 H 0.19 1.93 8.06 -52.49 -0.42 1.50 16 34 H 0.17 1.52 8.06 -52.48 -0.42 1.10 16 LS Contribution 331.78 15.07 5.00 5.00 Total: -1.00 -31.05 331.78 -5.98 -37.02 By element: Atomic # 1 Polarization: 1.63 SS G_CDS: -2.80 Total: -1.17 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -2.27 Total: -10.26 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 1.12 Total: -52.36 kcal Atomic # 8 Polarization: -34.78 SS G_CDS: -1.85 Total: -36.62 kcal Atomic # 9 Polarization: -2.93 SS G_CDS: 0.07 Total: -2.85 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.67 Total: 14.67 kcal Atomic # 16 Polarization: 47.15 SS G_CDS: -0.59 Total: 46.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.05 -5.98 -37.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190163415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.187 kcal (2) G-P(sol) polarization free energy of solvation -31.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds