Wall clock time and date at job start Tue Mar 31 2020 16:33:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 C 1.53007 * 109.47092 * 291.75012 * 3 2 1 5 5 N 1.46502 * 109.47000 * 180.02562 * 4 3 2 6 6 C 1.46499 * 119.99909 * 275.00017 * 5 4 3 7 7 C 1.50702 * 109.47036 * 275.00111 * 6 5 4 8 8 H 1.08008 * 120.00093 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00257 * 179.97438 * 7 6 5 10 10 N 1.31510 * 120.00275 * 179.97438 * 9 7 6 11 11 Si 1.86806 * 119.99539 * 0.02562 * 9 7 6 12 12 H 1.48505 * 109.46986 * 90.00009 * 11 9 7 13 13 H 1.48503 * 109.46749 * 209.99692 * 11 9 7 14 14 H 1.48492 * 109.47349 * 329.99982 * 11 9 7 15 15 S 1.65597 * 119.99551 * 95.00264 * 5 4 3 16 16 O 1.42100 * 106.40812 * 336.45445 * 15 5 4 17 17 O 1.42102 * 106.39708 * 203.53773 * 15 5 4 18 18 C 1.76199 * 107.21857 * 90.00075 * 15 5 4 19 19 N 1.31856 * 119.61009 * 330.01324 * 18 15 5 20 20 C 1.31833 * 121.77727 * 179.97438 * 19 18 15 21 21 C 1.38470 * 120.78046 * 0.02562 * 20 19 18 22 22 F 1.35105 * 120.43091 * 180.02562 * 21 20 19 23 23 C 1.38795 * 119.13991 * 359.97438 * 21 20 19 24 24 C 1.38435 * 119.60726 * 149.99532 * 18 15 5 25 25 F 1.35106 * 120.43164 * 359.74979 * 24 18 15 26 26 H 1.09001 * 109.46721 * 171.75229 * 3 2 1 27 27 H 1.08991 * 109.47606 * 51.75146 * 3 2 1 28 28 H 1.08995 * 109.47131 * 60.00030 * 4 3 2 29 29 H 1.09000 * 109.46714 * 300.00479 * 4 3 2 30 30 H 1.08995 * 109.47096 * 34.99782 * 6 5 4 31 31 H 1.08992 * 109.47140 * 155.00341 * 6 5 4 32 32 H 0.97003 * 119.99901 * 180.02562 * 10 9 7 33 33 H 1.07997 * 119.60916 * 179.97438 * 20 19 18 34 34 H 1.08004 * 120.81081 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.5337 1.3399 5 7 4.5833 -0.5324 1.3401 6 6 5.3168 -1.6647 0.7690 7 6 5.4614 -2.7456 1.8091 8 1 5.0479 -2.6035 2.7967 9 6 6.1207 -3.9163 1.4997 10 7 6.2474 -4.8593 2.4075 11 14 6.8353 -4.1622 -0.2087 12 1 8.2322 -3.6592 -0.2380 13 1 6.8226 -5.6082 -0.5470 14 1 6.0192 -3.4150 -1.1989 15 16 5.4100 0.7488 1.9860 16 8 4.5274 1.8615 1.9375 17 8 6.6930 0.7474 1.3751 18 6 5.6708 0.3946 3.6921 19 7 4.7974 -0.3473 4.3444 20 6 4.9505 -0.6391 5.6209 21 6 6.0451 -0.1714 6.3284 22 9 6.1952 -0.4752 7.6363 23 6 6.9865 0.6127 5.6763 24 6 6.7905 0.8981 4.3318 25 9 7.6837 1.6529 3.6552 26 1 2.9708 1.0179 -0.1474 27 1 2.9717 -0.6353 -0.8070 28 1 2.7554 -1.5508 1.4873 29 1 2.7545 0.1024 2.1469 30 1 4.7699 -2.0565 -0.0886 31 1 6.3048 -1.3335 0.4494 32 1 6.7116 -5.6828 2.1899 33 1 4.2131 -1.2495 6.1209 34 1 7.8507 0.9915 6.2019 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190163415.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:35 Heat of formation + Delta-G solvation = -107.937792 kcal Electronic energy + Delta-G solvation = -26520.141558 eV Core-core repulsion = 22216.320493 eV Total energy + Delta-G solvation = -4303.821064 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 331.059 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.59133 -50.40464 -41.13984 -38.54157 -38.30121 -37.11719 -37.04912 -34.58433 -33.73498 -32.27582 -32.19886 -29.24917 -25.86613 -25.15086 -25.10793 -23.49465 -20.56385 -19.67427 -19.54986 -19.24532 -18.80804 -18.47222 -18.06766 -17.70290 -17.28112 -17.15813 -16.73583 -16.26592 -16.16669 -15.81983 -15.64011 -15.41353 -14.88143 -14.63079 -14.61775 -14.39902 -14.09788 -13.99770 -13.73148 -13.54113 -13.36255 -13.28589 -13.04391 -12.90995 -12.71613 -12.59075 -12.20707 -12.00388 -11.65838 -11.52689 -11.21659 -11.14764 -10.67139 -10.50963 -9.86194 -8.18068 -6.21429 -0.99816 -0.71895 -0.42574 1.45723 1.50220 1.54621 1.59791 1.85713 1.88720 1.91060 2.28188 2.40572 2.44815 2.63535 2.95969 3.18408 3.20534 3.31213 3.52783 3.58170 3.90585 3.95932 4.09229 4.18964 4.47052 4.50778 4.66423 4.99390 5.04078 5.10791 5.20087 5.39602 5.56424 5.71901 6.12073 6.40849 6.65138 6.90249 7.42679 8.96779 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.006304 C = 0.004789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3220.881593 B = 4440.384786 C = 5845.662236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C 0.247 3.753 3 C -0.048 4.048 4 C 0.130 3.870 5 N -0.954 5.954 6 C 0.211 3.789 7 C -0.537 4.537 8 H 0.065 0.935 9 C 0.019 3.981 10 N -0.943 5.943 11 Si 0.916 3.084 12 H -0.278 1.278 13 H -0.291 1.291 14 H -0.223 1.223 15 S 2.705 3.295 16 O -0.954 6.954 17 O -0.961 6.961 18 C -0.494 4.494 19 N -0.348 5.348 20 C 0.052 3.948 21 C 0.138 3.862 22 F -0.104 7.104 23 C -0.152 4.152 24 C 0.145 3.855 25 F -0.108 7.108 26 H 0.129 0.871 27 H 0.142 0.858 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.075 0.925 31 H 0.046 0.954 32 H 0.262 0.738 33 H 0.211 0.789 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.095 10.824 3.829 11.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.170 5.170 2 C -0.070 4.070 3 C -0.089 4.089 4 C 0.003 3.997 5 N -0.792 5.792 6 C 0.087 3.913 7 C -0.576 4.576 8 H 0.083 0.917 9 C -0.180 4.180 10 N -0.584 5.584 11 Si 0.740 3.260 12 H -0.203 1.203 13 H -0.218 1.218 14 H -0.146 1.146 15 S 2.790 3.210 16 O -0.944 6.944 17 O -0.951 6.951 18 C -0.711 4.711 19 N -0.056 5.056 20 C -0.112 4.112 21 C 0.116 3.884 22 F -0.082 7.082 23 C -0.179 4.179 24 C 0.121 3.879 25 F -0.086 7.086 26 H 0.147 0.853 27 H 0.160 0.840 28 H 0.116 0.884 29 H 0.110 0.890 30 H 0.093 0.907 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.228 0.772 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -1.933 11.119 2.988 11.675 hybrid contribution 1.984 -0.795 1.004 2.361 sum 0.051 10.324 3.992 11.069 Atomic orbital electron populations 1.81221 1.14416 1.11131 1.10241 1.29174 0.95033 0.91192 0.91623 1.19967 0.80247 1.07051 1.01664 1.21193 0.77740 1.04476 0.96330 1.56820 1.14570 1.36320 1.71528 1.19661 0.93158 0.83603 0.94914 1.21845 1.35284 1.00301 1.00199 0.91718 1.25635 0.96194 0.95753 1.00380 1.70026 1.44341 1.07876 1.36122 0.86183 0.80068 0.77728 0.82031 1.20339 1.21766 1.14558 1.01953 0.73212 0.73256 0.72625 1.93580 1.65631 1.49048 1.86138 1.93594 1.41335 1.86786 1.73381 1.34062 1.00258 1.09129 1.27677 1.67821 1.24673 1.04791 1.08362 1.23797 0.97755 0.99519 0.90093 1.18627 0.95013 0.95109 0.79694 1.91622 1.95158 1.90503 1.30908 1.21978 1.02776 1.00473 0.92709 1.18071 0.87046 0.91516 0.91266 1.91654 1.65392 1.72196 1.79368 0.85273 0.84014 0.88351 0.88954 0.90693 0.93590 0.92863 0.77226 0.77862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.86 18.54 20.01 0.37 -14.49 16 2 C 0.25 6.05 15.43 89.44 1.38 7.43 16 3 C -0.05 -0.96 6.03 28.79 0.17 -0.78 16 4 C 0.13 3.38 5.30 86.38 0.46 3.84 16 5 N -0.95 -30.97 2.71 -519.85 -1.41 -32.37 16 6 C 0.21 8.03 4.50 85.63 0.39 8.42 16 7 C -0.54 -25.85 9.94 25.60 0.25 -25.59 16 8 H 0.06 3.37 8.05 -2.91 -0.02 3.35 16 9 C 0.02 0.97 5.47 84.65 0.46 1.43 16 10 N -0.94 -53.76 13.96 21.45 0.30 -53.46 16 11 Si 0.92 38.82 27.47 68.60 1.88 40.70 16 12 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 13 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 14 H -0.22 -8.04 6.54 99.48 0.65 -7.38 16 15 S 2.71 92.43 5.46 -56.49 -0.31 92.12 16 16 O -0.95 -31.76 16.99 -128.00 -2.17 -33.94 16 17 O -0.96 -37.38 15.31 -128.00 -1.96 -39.34 16 18 C -0.49 -16.51 6.77 84.74 0.57 -15.94 16 19 N -0.35 -11.07 10.22 -192.96 -1.97 -13.04 16 20 C 0.05 1.34 11.17 84.75 0.95 2.29 16 21 C 0.14 3.17 7.34 22.46 0.16 3.34 16 22 F -0.10 -2.11 17.28 44.97 0.78 -1.34 16 23 C -0.15 -3.51 10.15 22.55 0.23 -3.28 16 24 C 0.14 4.34 7.22 22.46 0.16 4.50 16 25 F -0.11 -3.32 15.79 44.97 0.71 -2.61 16 26 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.10 2.63 8.11 -2.39 -0.02 2.61 16 29 H 0.09 2.28 7.61 -2.39 -0.02 2.26 16 30 H 0.08 2.49 7.17 -2.39 -0.02 2.47 16 31 H 0.05 1.82 6.34 -2.39 -0.02 1.81 16 32 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 33 H 0.21 4.06 8.06 -2.91 -0.02 4.03 16 34 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -67.62 331.78 2.53 -65.09 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 1.12 Total: 7.00 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: 5.19 Total: -14.34 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -2.71 Total: -113.36 kcal Atomic # 8 Polarization: -69.14 SS G_CDS: -4.13 Total: -73.27 kcal Atomic # 9 Polarization: -5.43 SS G_CDS: 1.49 Total: -3.94 kcal Atomic # 14 Polarization: 38.82 SS G_CDS: 1.88 Total: 40.70 kcal Atomic # 16 Polarization: 92.43 SS G_CDS: -0.31 Total: 92.12 kcal Total: -67.62 2.53 -65.09 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190163415.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.844 kcal (2) G-P(sol) polarization free energy of solvation -67.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds