Wall clock time and date at job start Tue Mar 31 2020 16:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99812 * 2 1 4 4 H 1.48497 * 109.47145 * 270.00078 * 3 2 1 5 5 H 1.48493 * 109.47285 * 30.00217 * 3 2 1 6 6 H 1.48499 * 109.47013 * 150.00383 * 3 2 1 7 7 C 1.37879 * 120.00095 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00113 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99832 * 359.97438 * 7 2 1 10 10 O 1.42095 * 106.40697 * 66.46419 * 9 7 2 11 11 O 1.42103 * 106.40342 * 293.54144 * 9 7 2 12 12 N 1.65603 * 107.21930 * 180.02562 * 9 7 2 13 13 C 1.47072 * 120.88362 * 89.99776 * 12 9 7 14 14 C 1.53242 * 108.52192 * 231.21088 * 13 12 9 15 15 N 1.46906 * 109.33638 * 306.17002 * 14 13 12 16 16 C 1.39007 * 110.99646 * 187.25361 * 15 14 13 17 17 C 1.39081 * 119.69580 * 179.72635 * 16 15 14 18 18 C 1.38451 * 119.08058 * 179.75531 * 17 16 15 19 19 Cl 1.73600 * 120.76338 * 180.24389 * 18 17 16 20 20 C 1.39032 * 118.47284 * 0.50905 * 18 17 16 21 21 C 1.37964 * 119.31732 * 359.73337 * 20 18 17 22 22 N 1.31992 * 120.86778 * 0.02562 * 21 20 18 23 23 C 1.46895 * 111.26834 * 63.10342 * 15 14 13 24 24 C 1.47083 * 120.87904 * 270.02398 * 12 9 7 25 25 H 0.96999 * 120.00189 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.62875 * 111.49990 * 13 12 9 27 27 H 1.08997 * 109.63057 * 350.91834 * 13 12 9 28 28 H 1.08997 * 109.49523 * 186.21342 * 14 13 12 29 29 H 1.08992 * 109.51625 * 66.14231 * 14 13 12 30 30 H 1.08000 * 120.45963 * 359.97438 * 17 16 15 31 31 H 1.08004 * 120.33947 * 179.75719 * 20 18 17 32 32 H 1.07996 * 119.56676 * 180.02562 * 21 20 18 33 33 H 1.08997 * 109.49089 * 56.85952 * 23 15 14 34 34 H 1.09007 * 109.49281 * 176.93091 * 23 15 14 35 35 H 1.08995 * 109.62607 * 248.50260 * 24 12 9 36 36 H 1.09002 * 109.62670 * 9.07720 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 16 1.1236 -2.7200 -0.0005 10 8 0.4510 -2.7951 -1.2500 11 8 0.4519 -2.7955 1.2494 12 7 2.2483 -3.9354 -0.0005 13 6 2.7611 -4.4895 1.2617 14 6 4.2927 -4.4770 1.2121 15 7 4.7458 -5.1714 -0.0006 16 6 6.1275 -5.3237 -0.0004 17 6 6.7501 -5.9651 -1.0660 18 6 8.1274 -6.1054 -1.0551 19 17 8.9501 -6.8929 -2.3654 20 6 8.8360 -5.6060 0.0318 21 6 8.1519 -4.9854 1.0567 22 7 6.8384 -4.8619 1.0168 23 6 4.2928 -4.4767 -1.2130 24 6 2.7614 -4.4891 -1.2629 25 1 -0.4850 0.8400 0.0004 26 1 2.4070 -5.5132 1.3828 27 1 2.4168 -3.8788 2.0963 28 1 4.6892 -4.9846 2.0915 29 1 4.6481 -3.4468 1.1957 30 1 6.1675 -6.3453 -1.8921 31 1 9.9109 -5.7025 0.0733 32 1 8.6983 -4.5957 1.9028 33 1 4.6479 -3.4463 -1.1960 34 1 4.6896 -4.9839 -2.0926 35 1 2.4073 -5.5128 -1.3844 36 1 2.4172 -3.8782 -2.0974 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960830.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:36:58 Heat of formation + Delta-G solvation = -63.004389 kcal Electronic energy + Delta-G solvation = -24152.632561 eV Core-core repulsion = 20402.556636 eV Total energy + Delta-G solvation = -3750.075925 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77252 -39.49213 -37.72317 -37.48714 -36.16549 -35.73232 -35.14004 -33.35432 -32.07454 -31.23320 -28.27547 -27.39180 -25.57146 -23.76856 -23.61121 -21.83773 -20.48371 -19.54439 -18.73732 -18.08744 -17.74068 -17.11573 -16.78273 -16.65695 -16.22588 -16.07620 -15.70201 -15.51530 -15.25808 -15.08095 -14.76530 -14.41805 -13.98825 -13.56782 -13.38802 -13.33901 -13.14818 -13.04691 -13.03174 -12.65221 -12.51483 -12.33962 -12.27168 -12.20902 -12.07119 -11.75569 -11.27176 -11.16164 -10.93240 -10.60728 -10.49719 -9.88094 -9.19354 -8.76332 -7.50257 0.01591 0.05149 0.26419 0.89188 1.31330 1.31593 1.47559 2.17622 2.32105 2.55772 2.72466 2.81076 3.41518 3.74460 3.76295 3.85638 3.92657 3.96857 4.07283 4.18671 4.24824 4.31578 4.45244 4.49397 4.58351 4.62572 4.69049 4.80606 4.88146 4.97839 5.05290 5.08042 5.27006 5.37631 5.57563 5.87493 5.88106 6.05784 6.76531 6.93207 8.18933 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017735 B = 0.003395 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.378249 B = 8244.499941 C = 8723.014760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.986 3.014 4 H -0.253 1.253 5 H -0.261 1.261 6 H -0.252 1.252 7 C -1.039 5.039 8 H 0.113 0.887 9 S 2.720 3.280 10 O -1.036 7.036 11 O -1.038 7.038 12 N -1.012 6.012 13 C 0.124 3.876 14 C 0.066 3.934 15 N -0.473 5.473 16 C 0.314 3.686 17 C -0.186 4.186 18 C 0.024 3.976 19 Cl -0.046 7.046 20 C -0.190 4.190 21 C 0.138 3.862 22 N -0.541 5.541 23 C 0.051 3.949 24 C 0.124 3.876 25 H 0.299 0.701 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.043 0.957 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.193 0.807 33 H 0.044 0.956 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.428 -11.193 -1.615 23.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.804 3.196 4 H -0.177 1.177 5 H -0.185 1.185 6 H -0.175 1.175 7 C -1.172 5.172 8 H 0.131 0.869 9 S 2.822 3.178 10 O -1.027 7.027 11 O -1.029 7.029 12 N -0.851 5.851 13 C -0.002 4.002 14 C -0.063 4.063 15 N -0.190 5.190 16 C 0.083 3.917 17 C -0.209 4.209 18 C -0.011 4.011 19 Cl -0.016 7.016 20 C -0.212 4.212 21 C -0.020 4.020 22 N -0.256 5.256 23 C -0.076 4.076 24 C -0.002 4.002 25 H 0.109 0.891 26 H 0.104 0.896 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.061 0.939 30 H 0.175 0.825 31 H 0.188 0.812 32 H 0.210 0.790 33 H 0.062 0.938 34 H 0.141 0.859 35 H 0.110 0.890 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 18.611 -11.395 -1.064 21.848 hybrid contribution 1.112 1.288 -0.697 1.839 sum 19.723 -10.106 -1.761 22.231 Atomic orbital electron populations 1.69980 1.08682 1.32347 1.41417 1.25954 0.95319 1.05160 0.87557 0.85187 0.79097 0.75170 0.80113 1.17741 1.18523 1.17505 1.30949 1.06772 1.12802 1.66659 0.86897 1.00008 0.72663 0.73560 0.71531 1.93296 1.74300 1.88272 1.46801 1.93297 1.74409 1.88266 1.46891 1.57858 1.61593 1.53511 1.12117 1.21586 0.93141 1.00307 0.85167 1.22267 0.94074 0.97582 0.92331 1.58987 1.06121 1.48705 1.05143 1.19895 0.89097 0.92546 0.90203 1.21533 0.93616 1.04530 1.01236 1.21220 0.92386 0.96388 0.91125 1.98402 1.78148 1.78332 1.46766 1.22246 1.03198 1.02102 0.93643 1.23105 0.88264 0.92698 0.97931 1.67673 1.09910 1.20640 1.27409 1.22722 0.95768 0.97462 0.91693 1.21581 0.92529 1.00837 0.85228 0.89055 0.89568 0.89728 0.87524 0.93903 0.82498 0.81212 0.78988 0.93787 0.85894 0.88996 0.89169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.17 13.19 21.45 0.28 -52.89 16 2 C 0.07 4.06 5.46 84.65 0.46 4.52 16 3 Si 0.99 41.29 29.54 68.60 2.03 43.31 16 4 H -0.25 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.26 16 7 C -1.04 -57.03 9.75 67.73 0.66 -56.37 16 8 H 0.11 5.68 7.81 -2.91 -0.02 5.66 16 9 S 2.72 145.82 4.98 -56.49 -0.28 145.54 16 10 O -1.04 -60.95 16.80 -128.00 -2.15 -63.10 16 11 O -1.04 -61.74 16.80 -128.00 -2.15 -63.89 16 12 N -1.01 -40.31 3.33 -512.20 -1.71 -42.02 16 13 C 0.12 4.20 6.53 86.35 0.56 4.76 16 14 C 0.07 1.94 4.82 86.38 0.42 2.36 16 15 N -0.47 -12.54 4.65 -700.99 -3.26 -15.80 16 16 C 0.31 7.61 6.40 133.04 0.85 8.46 16 17 C -0.19 -3.70 8.99 22.52 0.20 -3.49 16 18 C 0.02 0.41 6.37 22.51 0.14 0.55 16 19 Cl -0.05 -0.69 29.02 -2.72 -0.08 -0.77 16 20 C -0.19 -2.76 9.93 22.40 0.22 -2.54 16 21 C 0.14 2.31 11.17 84.60 0.95 3.26 16 22 N -0.54 -12.92 8.67 -193.33 -1.68 -14.59 16 23 C 0.05 1.33 5.42 86.38 0.47 1.80 16 24 C 0.12 3.96 6.53 86.34 0.56 4.52 16 25 H 0.30 15.99 8.31 -92.71 -0.77 15.21 16 26 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.08 3.11 7.22 -2.39 -0.02 3.09 16 28 H 0.11 2.84 7.65 -2.39 -0.02 2.82 16 29 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.16 2.68 7.15 -2.91 -0.02 2.66 16 31 H 0.17 1.47 8.06 -2.91 -0.02 1.44 16 32 H 0.19 1.95 8.06 -2.91 -0.02 1.93 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.12 2.37 6.64 -2.38 -0.02 2.36 16 35 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 36 H 0.09 3.07 7.22 -2.39 -0.02 3.05 16 Total: -1.00 -76.16 330.32 -2.38 -78.54 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 1.11 Total: 17.84 kcal Atomic # 6 Polarization: -37.66 SS G_CDS: 5.50 Total: -32.16 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -6.36 Total: -125.31 kcal Atomic # 8 Polarization: -122.69 SS G_CDS: -4.30 Total: -126.99 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.03 Total: 43.31 kcal Atomic # 16 Polarization: 145.82 SS G_CDS: -0.28 Total: 145.54 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -0.08 Total: -0.77 kcal Total: -76.16 -2.38 -78.54 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960830.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.533 kcal (2) G-P(sol) polarization free energy of solvation -76.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds