Wall clock time and date at job start Tue Mar 31 2020 15:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46874 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47066 * 120.00033 * 3 2 1 6 6 H 1.48495 * 109.47328 * 240.00625 * 3 2 1 7 7 C 1.37876 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00082 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99930 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40138 * 293.53965 * 9 7 2 11 11 O 1.42099 * 106.40244 * 66.46084 * 9 7 2 12 12 N 1.65606 * 107.21449 * 180.02562 * 9 7 2 13 13 C 1.46374 * 119.64278 * 261.65617 * 12 9 7 14 14 C 1.52732 * 109.77227 * 245.08495 * 13 12 9 15 15 S 1.81743 * 108.83931 * 302.52536 * 14 13 12 16 16 C 1.81744 * 102.30495 * 54.42211 * 15 14 13 17 17 C 1.46371 * 119.64555 * 81.93051 * 12 9 7 18 18 H 1.09003 * 109.46514 * 234.91164 * 17 12 9 19 19 C 1.50696 * 109.47146 * 354.90535 * 17 12 9 20 20 C 1.38252 * 119.97160 * 283.25380 * 19 17 12 21 21 C 1.38200 * 120.02088 * 179.72453 * 20 19 17 22 22 C 1.38460 * 119.97586 * 0.56779 * 21 20 19 23 23 F 1.35098 * 120.02338 * 179.67832 * 22 21 20 24 24 C 1.38454 * 119.94614 * 359.70572 * 22 21 20 25 25 C 1.38193 * 119.97814 * 0.02562 * 24 22 21 26 26 H 0.97005 * 120.00327 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47136 * 5.09289 * 13 12 9 28 28 H 1.09004 * 109.46991 * 125.08648 * 13 12 9 29 29 H 1.08993 * 109.66163 * 182.65973 * 14 13 12 30 30 H 1.09004 * 109.57704 * 62.34203 * 14 13 12 31 31 H 1.09001 * 109.57988 * 185.66411 * 16 15 14 32 32 H 1.09002 * 109.58543 * 65.25477 * 16 15 14 33 33 H 1.07998 * 119.98870 * 359.97438 * 20 19 17 34 34 H 1.08006 * 120.01089 * 180.25007 * 21 20 19 35 35 H 1.08010 * 120.01036 * 180.02562 * 24 22 21 36 36 H 1.08001 * 119.99223 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4519 -2.7955 1.2494 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9354 -0.0005 13 6 2.6046 -4.5921 -1.2592 14 6 2.1732 -6.0567 -1.2181 15 16 2.9637 -6.8615 0.2068 16 6 2.4649 -5.7866 1.5848 17 6 2.8712 -4.3455 1.2590 18 1 3.9555 -4.2864 1.1642 19 6 2.4133 -3.4319 2.3666 20 6 2.9496 -2.1629 2.4813 21 6 2.5263 -1.3222 3.4932 22 6 1.5733 -1.7556 4.3994 23 9 1.1636 -0.9369 5.3929 24 6 1.0412 -3.0288 4.2869 25 6 1.4619 -3.8657 3.2708 26 1 -0.4851 -0.8401 -0.0004 27 1 2.1011 -4.0908 -2.0858 28 1 3.6835 -4.5380 -1.4046 29 1 2.4812 -6.5557 -2.1368 30 1 1.0895 -6.1154 -1.1161 31 1 2.9637 -6.1091 2.4987 32 1 1.3843 -5.8404 1.7175 33 1 3.6966 -1.8269 1.7774 34 1 2.9424 -0.3293 3.5802 35 1 0.2974 -3.3678 4.9929 36 1 1.0466 -4.8588 3.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192961637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:58 Heat of formation + Delta-G solvation = -90.340204 kcal Electronic energy + Delta-G solvation = -25803.683156 eV Core-core repulsion = 22034.545606 eV Total energy + Delta-G solvation = -3769.137551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 5.57 seconds Orbital eigenvalues (eV) -48.38769 -39.31004 -36.72832 -35.60343 -34.44047 -33.25189 -32.57741 -30.72087 -29.14963 -28.54068 -25.59830 -24.08056 -22.49702 -22.23035 -20.83130 -19.34541 -18.14057 -17.25504 -16.56833 -16.13662 -15.83784 -15.48541 -15.07252 -15.02791 -14.75572 -14.34630 -14.08277 -14.01298 -13.77023 -13.66554 -13.12614 -12.95888 -12.78211 -12.52755 -12.15847 -11.97820 -11.71106 -11.50276 -11.15027 -11.08283 -10.95367 -10.64777 -10.59536 -10.41474 -10.37437 -10.31613 -9.73591 -9.23784 -9.07747 -8.45079 -8.33315 -7.87754 -7.61228 -7.21521 -5.41440 1.58316 1.80227 1.92176 2.00964 2.52336 3.15584 3.17752 3.37344 3.82791 4.12434 4.35834 4.66705 4.72153 4.83545 4.91408 4.98484 5.08346 5.15394 5.31307 5.39300 5.41134 5.50435 5.56750 5.70820 5.76252 5.86624 5.96394 6.07297 6.11877 6.30790 6.44470 6.50482 6.68914 6.82083 6.96305 7.23122 7.47910 7.52856 7.97108 8.56141 10.15060 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.007541 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.056893 B = 3711.994486 C = 5254.552778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.096 3.904 3 Si 1.069 2.931 4 H -0.272 1.272 5 H -0.274 1.274 6 H -0.276 1.276 7 C -1.074 5.074 8 H 0.102 0.898 9 S 2.681 3.319 10 O -0.987 6.987 11 O -1.016 7.016 12 N -1.004 6.004 13 C 0.120 3.880 14 C -0.097 4.097 15 S -0.269 6.269 16 C -0.094 4.094 17 C 0.211 3.789 18 H 0.092 0.908 19 C -0.124 4.124 20 C -0.042 4.042 21 C -0.148 4.148 22 C 0.106 3.894 23 F -0.150 7.150 24 C -0.158 4.158 25 C -0.023 4.023 26 H 0.276 0.724 27 H 0.106 0.894 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.092 0.908 33 H 0.134 0.866 34 H 0.128 0.872 35 H 0.124 0.876 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.679 -8.498 3.652 12.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.123 4.123 3 Si 0.892 3.108 4 H -0.197 1.197 5 H -0.199 1.199 6 H -0.201 1.201 7 C -1.208 5.208 8 H 0.120 0.880 9 S 2.785 3.215 10 O -0.977 6.977 11 O -1.006 7.006 12 N -0.838 5.838 13 C -0.008 4.008 14 C -0.247 4.247 15 S -0.041 6.041 16 C -0.243 4.243 17 C 0.103 3.897 18 H 0.110 0.890 19 C -0.127 4.127 20 C -0.061 4.061 21 C -0.167 4.167 22 C 0.087 3.913 23 F -0.129 7.129 24 C -0.177 4.177 25 C -0.042 4.042 26 H 0.088 0.912 27 H 0.124 0.876 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.142 0.858 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 7.133 -8.026 3.654 11.342 hybrid contribution -0.257 -0.089 -0.064 0.279 sum 6.875 -8.116 3.591 11.226 Atomic orbital electron populations 1.70851 1.07233 1.31926 1.37039 1.25777 0.95025 1.03472 0.87990 0.83582 0.75547 0.73904 0.77731 1.19662 1.19905 1.20112 1.31406 1.07569 1.12159 1.69690 0.87967 1.01461 0.72963 0.74164 0.72935 1.93535 1.73137 1.87362 1.43665 1.93392 1.73263 1.87863 1.46112 1.57942 1.61769 1.53708 1.10408 1.21240 1.01595 0.90922 0.87023 1.23787 1.03321 0.99171 0.98373 1.86553 1.71531 1.41149 1.04858 1.24035 1.05183 0.96661 0.98468 1.19532 0.97919 0.90439 0.81852 0.89037 1.19571 0.99903 0.95473 0.97770 1.20801 0.98546 0.91523 0.95215 1.20827 0.99217 1.00587 0.96101 1.17685 0.97171 0.88876 0.87602 1.91435 1.89545 1.72319 1.59560 1.20771 1.02325 0.93243 1.01405 1.20470 0.92907 0.98750 0.92042 0.91229 0.87560 0.90438 0.86925 0.89623 0.86751 0.88943 0.84822 0.85434 0.85776 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.68 13.66 55.43 0.76 -23.92 16 2 C 0.10 2.57 5.46 -17.82 -0.10 2.47 16 3 Si 1.07 22.91 29.90 -169.99 -5.08 17.82 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 7 C -1.07 -26.82 7.25 30.60 0.22 -26.60 16 8 H 0.10 2.32 6.71 -52.49 -0.35 1.97 16 9 S 2.68 64.28 3.72 -107.50 -0.40 63.88 16 10 O -0.99 -24.75 12.67 -57.17 -0.72 -25.48 16 11 O -1.02 -27.58 16.00 -57.17 -0.91 -28.50 16 12 N -1.00 -18.32 3.10 -108.74 -0.34 -18.65 16 13 C 0.12 1.87 6.18 -4.25 -0.03 1.84 16 14 C -0.10 -1.31 6.65 37.02 0.25 -1.06 16 15 S -0.27 -3.59 22.30 -107.50 -2.40 -5.99 16 16 C -0.09 -1.27 4.88 37.28 0.18 -1.08 16 17 C 0.21 3.30 2.96 -69.03 -0.20 3.09 16 18 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.12 -2.16 2.93 -104.62 -0.31 -2.46 16 20 C -0.04 -0.77 6.77 -39.59 -0.27 -1.03 16 21 C -0.15 -2.78 10.03 -39.51 -0.40 -3.17 16 22 C 0.11 1.99 7.30 -39.42 -0.29 1.70 16 23 F -0.15 -2.78 17.27 2.25 0.04 -2.74 16 24 C -0.16 -2.77 10.02 -39.52 -0.40 -3.17 16 25 C -0.02 -0.39 7.14 -39.60 -0.28 -0.67 16 26 H 0.28 8.35 6.52 -40.82 -0.27 8.08 16 27 H 0.11 1.80 6.76 -51.93 -0.35 1.45 16 28 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 29 H 0.11 1.22 8.14 -51.93 -0.42 0.80 16 30 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 31 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.09 1.31 6.66 -51.93 -0.35 0.97 16 33 H 0.13 2.30 6.67 -52.49 -0.35 1.95 16 34 H 0.13 2.20 8.06 -52.48 -0.42 1.78 16 35 H 0.12 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.12 1.78 5.90 -52.49 -0.31 1.47 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -31.83 313.56 -9.68 -41.51 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: -3.73 Total: 7.49 kcal Atomic # 6 Polarization: -28.53 SS G_CDS: -1.62 Total: -30.14 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.42 Total: -42.57 kcal Atomic # 8 Polarization: -52.33 SS G_CDS: -1.64 Total: -53.97 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 22.91 SS G_CDS: -5.08 Total: 17.82 kcal Atomic # 16 Polarization: 60.68 SS G_CDS: -2.80 Total: 57.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -31.83 -9.68 -41.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.831 kcal (2) G-P(sol) polarization free energy of solvation -31.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.57 seconds