Wall clock time and date at job start Tue Mar 31 2020 15:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00074 * 2 1 4 4 H 1.48501 * 109.46874 * 0.02562 * 3 2 1 5 5 H 1.48493 * 109.47066 * 120.00033 * 3 2 1 6 6 H 1.48495 * 109.47328 * 240.00625 * 3 2 1 7 7 C 1.37876 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00082 * 179.97438 * 7 2 1 9 9 S 1.76204 * 119.99930 * 359.97438 * 7 2 1 10 10 O 1.42099 * 106.40138 * 293.53965 * 9 7 2 11 11 O 1.42099 * 106.40244 * 66.46084 * 9 7 2 12 12 N 1.65606 * 107.21449 * 180.02562 * 9 7 2 13 13 C 1.46374 * 119.64278 * 261.65617 * 12 9 7 14 14 C 1.52732 * 109.77227 * 245.08495 * 13 12 9 15 15 S 1.81743 * 108.83931 * 302.52536 * 14 13 12 16 16 C 1.81744 * 102.30495 * 54.42211 * 15 14 13 17 17 C 1.46371 * 119.64555 * 81.93051 * 12 9 7 18 18 H 1.09003 * 109.46514 * 234.91164 * 17 12 9 19 19 C 1.50696 * 109.47146 * 354.90535 * 17 12 9 20 20 C 1.38252 * 119.97160 * 283.25380 * 19 17 12 21 21 C 1.38200 * 120.02088 * 179.72453 * 20 19 17 22 22 C 1.38460 * 119.97586 * 0.56779 * 21 20 19 23 23 F 1.35098 * 120.02338 * 179.67832 * 22 21 20 24 24 C 1.38454 * 119.94614 * 359.70572 * 22 21 20 25 25 C 1.38193 * 119.97814 * 0.02562 * 24 22 21 26 26 H 0.97005 * 120.00327 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47136 * 5.09289 * 13 12 9 28 28 H 1.09004 * 109.46991 * 125.08648 * 13 12 9 29 29 H 1.08993 * 109.66163 * 182.65973 * 14 13 12 30 30 H 1.09004 * 109.57704 * 62.34203 * 14 13 12 31 31 H 1.09001 * 109.57988 * 185.66411 * 16 15 14 32 32 H 1.09002 * 109.58543 * 65.25477 * 16 15 14 33 33 H 1.07998 * 119.98870 * 359.97438 * 20 19 17 34 34 H 1.08006 * 120.01089 * 180.25007 * 21 20 19 35 35 H 1.08010 * 120.01036 * 180.02562 * 24 22 21 36 36 H 1.08001 * 119.99223 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2841 2.7464 0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 16 1.1235 -2.7200 -0.0005 10 8 0.4519 -2.7955 1.2494 11 8 0.4509 -2.7950 -1.2500 12 7 2.2483 -3.9354 -0.0005 13 6 2.6046 -4.5921 -1.2592 14 6 2.1732 -6.0567 -1.2181 15 16 2.9637 -6.8615 0.2068 16 6 2.4649 -5.7866 1.5848 17 6 2.8712 -4.3455 1.2590 18 1 3.9555 -4.2864 1.1642 19 6 2.4133 -3.4319 2.3666 20 6 2.9496 -2.1629 2.4813 21 6 2.5263 -1.3222 3.4932 22 6 1.5733 -1.7556 4.3994 23 9 1.1636 -0.9369 5.3929 24 6 1.0412 -3.0288 4.2869 25 6 1.4619 -3.8657 3.2708 26 1 -0.4851 -0.8401 -0.0004 27 1 2.1011 -4.0908 -2.0858 28 1 3.6835 -4.5380 -1.4046 29 1 2.4812 -6.5557 -2.1368 30 1 1.0895 -6.1154 -1.1161 31 1 2.9637 -6.1091 2.4987 32 1 1.3843 -5.8404 1.7175 33 1 3.6966 -1.8269 1.7774 34 1 2.9424 -0.3293 3.5802 35 1 0.2974 -3.3678 4.9929 36 1 1.0466 -4.8588 3.1826 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192961637.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:50 Heat of formation + Delta-G solvation = -110.790046 kcal Electronic energy + Delta-G solvation = -25804.569928 eV Core-core repulsion = 22034.545606 eV Total energy + Delta-G solvation = -3770.024322 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.050 amu Computer time = 6.17 seconds Orbital eigenvalues (eV) -49.82798 -40.66505 -38.12230 -37.47795 -36.39383 -35.25360 -33.83967 -32.08355 -30.44714 -29.80840 -27.59313 -25.33150 -23.82196 -23.55831 -22.23814 -21.26438 -19.62110 -18.76535 -18.21842 -17.52205 -17.26340 -16.85090 -16.63000 -16.47972 -16.24870 -15.75510 -15.63039 -15.56365 -15.26379 -14.96804 -14.59863 -14.24506 -14.22444 -13.94215 -13.68572 -13.38927 -13.04788 -12.98026 -12.89243 -12.69175 -12.60232 -12.48559 -12.03654 -12.02222 -11.99229 -11.72850 -11.13397 -10.88610 -10.69969 -10.06689 -9.76088 -9.33384 -9.25481 -8.67647 -7.46732 0.06636 0.31854 0.54779 0.76552 1.44675 1.45682 1.48878 1.70636 2.29673 2.44035 2.68253 2.90381 3.43924 3.49198 3.54786 3.58882 3.86509 3.91319 4.02368 4.08344 4.09183 4.16322 4.41642 4.43104 4.51678 4.58462 4.62981 4.79789 4.82374 4.95614 5.09514 5.13479 5.31253 5.43076 5.50227 5.59926 5.77468 5.89599 6.12136 6.59076 8.05448 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012081 B = 0.007541 C = 0.005327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2317.056893 B = 3711.994486 C = 5254.552778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.049 3.951 3 Si 1.099 2.901 4 H -0.280 1.280 5 H -0.244 1.244 6 H -0.252 1.252 7 C -1.075 5.075 8 H 0.123 0.877 9 S 2.687 3.313 10 O -1.006 7.006 11 O -1.056 7.056 12 N -0.999 5.999 13 C 0.112 3.888 14 C -0.098 4.098 15 S -0.249 6.249 16 C -0.096 4.096 17 C 0.207 3.793 18 H 0.118 0.882 19 C -0.129 4.129 20 C -0.055 4.055 21 C -0.165 4.165 22 C 0.084 3.916 23 F -0.154 7.154 24 C -0.166 4.166 25 C -0.029 4.029 26 H 0.255 0.745 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.143 0.857 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.084 0.916 33 H 0.142 0.858 34 H 0.135 0.865 35 H 0.144 0.856 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.980 -9.788 3.748 14.472 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.162 4.162 3 Si 0.915 3.085 4 H -0.205 1.205 5 H -0.167 1.167 6 H -0.176 1.176 7 C -1.209 5.209 8 H 0.141 0.859 9 S 2.792 3.208 10 O -0.996 6.996 11 O -1.047 7.047 12 N -0.837 5.837 13 C -0.014 4.014 14 C -0.248 4.248 15 S -0.021 6.021 16 C -0.245 4.245 17 C 0.101 3.899 18 H 0.135 0.865 19 C -0.133 4.133 20 C -0.074 4.074 21 C -0.184 4.184 22 C 0.065 3.935 23 F -0.133 7.133 24 C -0.185 4.185 25 C -0.047 4.047 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.161 0.839 30 H 0.090 0.910 31 H 0.161 0.839 32 H 0.102 0.898 33 H 0.160 0.840 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 9.449 -9.340 3.750 13.805 hybrid contribution -0.923 0.194 -0.086 0.947 sum 8.526 -9.146 3.664 13.029 Atomic orbital electron populations 1.71003 1.08731 1.30641 1.40950 1.27269 0.94819 1.07500 0.86599 0.83305 0.75159 0.70010 0.80015 1.20494 1.16731 1.17623 1.31743 1.08738 1.12670 1.67737 0.85930 1.00961 0.73399 0.74683 0.71778 1.93506 1.74325 1.87829 1.43904 1.93336 1.74846 1.88615 1.47858 1.57518 1.61087 1.52591 1.12469 1.21495 1.03145 0.91704 0.85101 1.23798 1.02652 0.98066 1.00305 1.86540 1.70936 1.40547 1.04046 1.24056 1.05093 0.95322 1.00048 1.19829 0.99013 0.91198 0.79905 0.86464 1.19842 0.99646 0.95544 0.98223 1.21000 0.99018 0.92032 0.95357 1.21059 0.99595 1.01257 0.96512 1.17958 0.97943 0.89600 0.88014 1.91416 1.89644 1.72503 1.59689 1.21114 1.02502 0.92898 1.01985 1.20828 0.92559 0.99778 0.91581 0.93391 0.89464 0.87510 0.83945 0.91037 0.83881 0.89782 0.84012 0.84737 0.83807 0.83706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -53.05 13.66 21.45 0.29 -52.76 16 2 C 0.05 2.62 5.46 84.65 0.46 3.08 16 3 Si 1.10 44.82 29.90 68.60 2.05 46.87 16 4 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 5 H -0.24 -8.70 7.11 99.48 0.71 -8.00 16 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 16 7 C -1.07 -53.07 7.25 67.73 0.49 -52.58 16 8 H 0.12 5.35 6.71 -2.91 -0.02 5.33 16 9 S 2.69 128.92 3.72 -56.49 -0.21 128.71 16 10 O -1.01 -50.81 12.67 -128.00 -1.62 -52.43 16 11 O -1.06 -58.65 16.00 -128.00 -2.05 -60.70 16 12 N -1.00 -34.75 3.10 -497.93 -1.55 -36.29 16 13 C 0.11 3.27 6.18 86.31 0.53 3.80 16 14 C -0.10 -2.42 6.65 71.89 0.48 -1.94 16 15 S -0.25 -5.78 22.30 -56.49 -1.26 -7.04 16 16 C -0.10 -2.28 4.88 72.06 0.35 -1.93 16 17 C 0.21 5.93 2.96 44.35 0.13 6.06 16 18 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 19 C -0.13 -4.28 2.93 -19.86 -0.06 -4.33 16 20 C -0.06 -1.95 6.77 22.26 0.15 -1.80 16 21 C -0.17 -6.11 10.03 22.31 0.22 -5.88 16 22 C 0.08 3.14 7.30 22.37 0.16 3.31 16 23 F -0.15 -5.71 17.27 44.97 0.78 -4.94 16 24 C -0.17 -5.67 10.02 22.31 0.22 -5.45 16 25 C -0.03 -0.93 7.14 22.26 0.16 -0.77 16 26 H 0.26 16.08 6.52 -92.70 -0.60 15.47 16 27 H 0.09 2.90 6.76 -2.39 -0.02 2.89 16 28 H 0.11 2.49 8.14 -2.38 -0.02 2.47 16 29 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.14 2.60 8.14 -2.39 -0.02 2.58 16 32 H 0.08 2.18 6.66 -2.39 -0.02 2.16 16 33 H 0.14 4.61 6.67 -2.91 -0.02 4.59 16 34 H 0.13 4.58 8.06 -2.91 -0.02 4.56 16 35 H 0.14 4.17 8.06 -2.91 -0.02 4.15 16 36 H 0.15 3.91 5.90 -2.91 -0.02 3.90 16 Total: -1.00 -70.17 313.56 1.03 -69.14 By element: Atomic # 1 Polarization: 26.60 SS G_CDS: 1.28 Total: 27.88 kcal Atomic # 6 Polarization: -61.75 SS G_CDS: 3.31 Total: -58.44 kcal Atomic # 7 Polarization: -87.80 SS G_CDS: -1.25 Total: -89.05 kcal Atomic # 8 Polarization: -109.46 SS G_CDS: -3.67 Total: -113.13 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.78 Total: -4.94 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.05 Total: 46.87 kcal Atomic # 16 Polarization: 123.13 SS G_CDS: -1.47 Total: 121.66 kcal Total: -70.17 1.03 -69.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192961637.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.647 kcal (2) G-P(sol) polarization free energy of solvation -70.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.17 seconds