Wall clock time and date at job start Tue Mar 31 2020 16:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46578 * 299.99640 * 3 2 1 6 6 H 1.48493 * 109.47066 * 59.99361 * 3 2 1 7 7 C 1.37878 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00318 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00015 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40145 * 66.46267 * 9 7 2 11 11 O 1.42095 * 106.40683 * 293.54447 * 9 7 2 12 12 N 1.65600 * 107.21871 * 179.97438 * 9 7 2 13 13 C 1.47076 * 120.88196 * 269.72264 * 12 9 7 14 14 C 1.53703 * 108.27121 * 128.75554 * 13 12 9 15 15 N 1.46898 * 109.25629 * 54.08548 * 14 13 12 16 16 C 1.39074 * 111.00002 * 172.60314 * 15 14 13 17 17 N 1.32397 * 119.70866 * 60.41085 * 16 15 14 18 18 C 1.31959 * 121.63736 * 179.97438 * 17 16 15 19 19 C 1.38054 * 120.87583 * 0.02562 * 18 17 16 20 20 C 1.38848 * 119.33507 * 359.97438 * 19 18 17 21 21 C 1.38422 * 118.49685 * 359.73166 * 20 19 18 22 22 Cl 1.73596 * 120.46381 * 180.25947 * 21 20 19 23 23 C 1.46901 * 111.26813 * 296.75391 * 15 14 13 24 24 C 1.47077 * 120.87720 * 90.00363 * 12 9 7 25 25 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.63073 * 248.51880 * 13 12 9 27 27 H 1.08989 * 109.63102 * 9.10813 * 13 12 9 28 28 H 1.08993 * 109.65167 * 294.07616 * 14 13 12 29 29 H 1.09000 * 109.44315 * 173.95911 * 14 13 12 30 30 H 1.07997 * 119.56174 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.32942 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.74688 * 180.02562 * 20 19 18 33 33 H 1.09005 * 109.49163 * 303.14373 * 23 15 14 34 34 H 1.09003 * 109.51601 * 183.08059 * 23 15 14 35 35 H 1.08997 * 109.63340 * 350.89713 * 24 12 9 36 36 H 1.09006 * 109.62968 * 111.47839 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2476 11 8 0.4517 -2.7945 1.2518 12 7 2.2482 -3.9354 0.0016 13 6 2.7555 -4.4942 -1.2608 14 6 4.2916 -4.4781 -1.2121 15 7 4.7452 -5.1722 0.0004 16 6 6.1275 -5.3252 -0.0004 17 7 6.9061 -4.2549 -0.0363 18 6 8.2218 -4.3558 -0.0380 19 6 8.8377 -5.5909 -0.0027 20 6 8.0578 -6.7390 0.0356 21 6 6.6804 -6.6019 0.0426 22 17 5.6568 -8.0029 0.0967 23 6 4.2932 -4.4771 1.2131 24 6 2.7618 -4.4889 1.2637 25 1 -0.4850 0.8401 -0.0004 26 1 2.4006 -5.5183 -1.3767 27 1 2.4079 -3.8864 -2.0961 28 1 4.6470 -3.4478 -1.1960 29 1 4.6879 -4.9857 -2.0915 30 1 8.8248 -3.4604 -0.0674 31 1 9.9153 -5.6632 -0.0040 32 1 8.5157 -7.7168 0.0641 33 1 4.6486 -3.4467 1.1955 34 1 4.6903 -4.9838 2.0927 35 1 2.4184 -3.8777 2.0983 36 1 2.4074 -5.5125 1.3858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:52 Heat of formation + Delta-G solvation = -37.149788 kcal Electronic energy + Delta-G solvation = -24429.978280 eV Core-core repulsion = 20681.023494 eV Total energy + Delta-G solvation = -3748.954786 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.78592 -38.22375 -36.63185 -35.27731 -34.40318 -33.93268 -33.04081 -32.42187 -30.79315 -30.19124 -26.11222 -26.02229 -23.84313 -23.46147 -22.66235 -20.29607 -18.57336 -17.96297 -17.30220 -16.75784 -16.47728 -15.97833 -15.41837 -15.03628 -14.86056 -14.67710 -14.35560 -13.92620 -13.88157 -13.64012 -13.26861 -12.93517 -12.71833 -12.12965 -12.00601 -11.99225 -11.59017 -11.22734 -11.20036 -11.17343 -11.04038 -10.96573 -10.57455 -10.27603 -10.12971 -10.08961 -9.99244 -9.85078 -9.23986 -8.97850 -8.94906 -8.64768 -8.12962 -6.67707 -5.29368 0.66849 0.85591 1.98375 2.27040 3.06442 3.14752 3.22671 3.36634 3.50278 4.07283 4.30073 4.48962 4.53387 4.65858 4.66923 4.81041 5.04370 5.25007 5.30053 5.47376 5.53064 5.63815 5.69136 5.73344 5.74607 5.95072 6.00393 6.03485 6.11218 6.25612 6.41863 6.45579 6.77594 6.92781 7.21614 7.35064 7.57330 7.62726 8.01273 8.91707 10.25734 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004065 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.171676 B = 6886.217325 C = 7950.593749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.134 3.866 3 Si 0.919 3.081 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.271 1.271 7 C -1.018 5.018 8 H 0.101 0.899 9 S 2.715 3.285 10 O -1.003 7.003 11 O -1.003 7.003 12 N -1.014 6.014 13 C 0.135 3.865 14 C 0.049 3.951 15 N -0.481 5.481 16 C 0.312 3.688 17 N -0.492 5.492 18 C 0.113 3.887 19 C -0.170 4.170 20 C -0.068 4.068 21 C -0.062 4.062 22 Cl -0.038 7.038 23 C 0.049 3.951 24 C 0.135 3.865 25 H 0.290 0.710 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.060 0.940 29 H 0.077 0.923 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.145 0.855 33 H 0.059 0.941 34 H 0.077 0.923 35 H 0.097 0.903 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.006 -12.251 0.063 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.084 4.084 3 Si 0.743 3.257 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.196 1.196 7 C -1.152 5.152 8 H 0.120 0.880 9 S 2.816 3.184 10 O -0.994 6.994 11 O -0.994 6.994 12 N -0.849 5.849 13 C 0.008 3.992 14 C -0.079 4.079 15 N -0.205 5.205 16 C 0.082 3.918 17 N -0.204 5.204 18 C -0.046 4.046 19 C -0.190 4.190 20 C -0.095 4.095 21 C -0.093 4.093 22 Cl -0.009 7.009 23 C -0.079 4.079 24 C 0.008 3.992 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.178 0.822 31 H 0.160 0.840 32 H 0.163 0.837 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.138 -12.081 0.047 20.159 hybrid contribution 1.845 1.056 0.023 2.126 sum 17.983 -11.024 0.070 21.094 Atomic orbital electron populations 1.69907 1.06761 1.30577 1.40353 1.24740 0.94421 1.00750 0.88501 0.86162 0.80513 0.80536 0.78535 1.18644 1.19625 1.19634 1.30655 1.06114 1.11836 1.66546 0.88024 1.00534 0.72124 0.72929 0.72805 1.93352 1.72714 1.87570 1.45730 1.93352 1.72732 1.87576 1.45709 1.58297 1.62338 1.54454 1.09804 1.21363 0.91116 0.99788 0.86905 1.22622 0.96930 0.97928 0.90403 1.60169 1.03763 1.51900 1.04699 1.19850 0.90839 0.87306 0.93762 1.68059 1.06777 1.33016 1.12558 1.22732 0.90127 0.97672 0.94065 1.22132 1.01545 0.92714 1.02631 1.21514 0.91191 1.00333 0.96419 1.21740 0.91959 0.89235 1.06363 1.98383 1.67923 1.38144 1.96462 1.22547 0.97041 0.97822 0.90442 1.21266 0.91109 0.99877 0.86927 0.89977 0.91430 0.88490 0.92166 0.90479 0.82244 0.83953 0.83701 0.92275 0.90419 0.88500 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.98 13.19 55.43 0.73 -24.25 16 2 C 0.13 3.74 5.46 -17.82 -0.10 3.65 16 3 Si 0.92 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.26 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 7 C -1.02 -28.10 9.75 30.60 0.30 -27.81 16 8 H 0.10 2.62 7.81 -52.49 -0.41 2.21 16 9 S 2.71 72.32 4.98 -107.50 -0.54 71.79 16 10 O -1.00 -29.22 16.79 -57.17 -0.96 -30.18 16 11 O -1.00 -29.22 16.80 -57.17 -0.96 -30.18 16 12 N -1.01 -20.78 3.32 -112.98 -0.38 -21.15 16 13 C 0.13 2.36 6.56 -3.36 -0.02 2.34 16 14 C 0.05 0.76 5.40 -3.46 -0.02 0.74 16 15 N -0.48 -7.12 4.00 -172.58 -0.69 -7.81 16 16 C 0.31 4.20 5.28 -154.93 -0.82 3.38 16 17 N -0.49 -6.60 9.80 -12.40 -0.12 -6.72 16 18 C 0.11 1.10 11.17 -17.56 -0.20 0.90 16 19 C -0.17 -1.29 10.10 -39.42 -0.40 -1.69 16 20 C -0.07 -0.58 9.97 -39.29 -0.39 -0.97 16 21 C -0.06 -0.71 6.36 -39.16 -0.25 -0.96 16 22 Cl -0.04 -0.43 28.47 -51.86 -1.48 -1.90 16 23 C 0.05 0.76 5.43 -3.70 -0.02 0.74 16 24 C 0.13 2.36 6.53 -3.61 -0.02 2.34 16 25 H 0.29 7.67 8.31 -40.82 -0.34 7.33 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 27 H 0.10 1.77 7.21 -51.94 -0.37 1.40 16 28 H 0.06 1.03 8.04 -51.93 -0.42 0.61 16 29 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 30 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 31 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 32 H 0.15 0.86 8.06 -52.49 -0.42 0.44 16 33 H 0.06 1.01 8.09 -51.93 -0.42 0.59 16 34 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 35 H 0.10 1.77 7.22 -51.93 -0.37 1.39 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -35.50 333.54 -10.41 -45.90 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -4.09 Total: 1.04 kcal Atomic # 6 Polarization: -15.38 SS G_CDS: -1.94 Total: -17.32 kcal Atomic # 7 Polarization: -59.47 SS G_CDS: -0.46 Total: -59.93 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -1.92 Total: -60.36 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 72.32 SS G_CDS: -0.54 Total: 71.79 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.50 -10.41 -45.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.754 kcal (2) G-P(sol) polarization free energy of solvation -35.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds