Wall clock time and date at job start Tue Mar 31 2020 16:32:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 120.00289 * 2 1 4 4 H 1.48500 * 109.47206 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46578 * 299.99640 * 3 2 1 6 6 H 1.48493 * 109.47066 * 59.99361 * 3 2 1 7 7 C 1.37878 * 119.99864 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00318 * 180.02562 * 7 2 1 9 9 S 1.76200 * 120.00015 * 359.97438 * 7 2 1 10 10 O 1.42102 * 106.40145 * 66.46267 * 9 7 2 11 11 O 1.42095 * 106.40683 * 293.54447 * 9 7 2 12 12 N 1.65600 * 107.21871 * 179.97438 * 9 7 2 13 13 C 1.47076 * 120.88196 * 269.72264 * 12 9 7 14 14 C 1.53703 * 108.27121 * 128.75554 * 13 12 9 15 15 N 1.46898 * 109.25629 * 54.08548 * 14 13 12 16 16 C 1.39074 * 111.00002 * 172.60314 * 15 14 13 17 17 N 1.32397 * 119.70866 * 60.41085 * 16 15 14 18 18 C 1.31959 * 121.63736 * 179.97438 * 17 16 15 19 19 C 1.38054 * 120.87583 * 0.02562 * 18 17 16 20 20 C 1.38848 * 119.33507 * 359.97438 * 19 18 17 21 21 C 1.38422 * 118.49685 * 359.73166 * 20 19 18 22 22 Cl 1.73596 * 120.46381 * 180.25947 * 21 20 19 23 23 C 1.46901 * 111.26813 * 296.75391 * 15 14 13 24 24 C 1.47077 * 120.87720 * 90.00363 * 12 9 7 25 25 H 0.97003 * 119.99830 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.63073 * 248.51880 * 13 12 9 27 27 H 1.08989 * 109.63102 * 9.10813 * 13 12 9 28 28 H 1.08993 * 109.65167 * 294.07616 * 14 13 12 29 29 H 1.09000 * 109.44315 * 173.95911 * 14 13 12 30 30 H 1.07997 * 119.56174 * 180.02562 * 18 17 16 31 31 H 1.08002 * 120.32942 * 180.02562 * 19 18 17 32 32 H 1.07999 * 120.74688 * 180.02562 * 20 19 18 33 33 H 1.09005 * 109.49163 * 303.14373 * 23 15 14 34 34 H 1.09003 * 109.51601 * 183.08059 * 23 15 14 35 35 H 1.08997 * 109.63340 * 350.89713 * 24 12 9 36 36 H 1.09006 * 109.62968 * 111.47839 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 16 1.1235 -2.7200 0.0019 10 8 0.4509 -2.7961 -1.2476 11 8 0.4517 -2.7945 1.2518 12 7 2.2482 -3.9354 0.0016 13 6 2.7555 -4.4942 -1.2608 14 6 4.2916 -4.4781 -1.2121 15 7 4.7452 -5.1722 0.0004 16 6 6.1275 -5.3252 -0.0004 17 7 6.9061 -4.2549 -0.0363 18 6 8.2218 -4.3558 -0.0380 19 6 8.8377 -5.5909 -0.0027 20 6 8.0578 -6.7390 0.0356 21 6 6.6804 -6.6019 0.0426 22 17 5.6568 -8.0029 0.0967 23 6 4.2932 -4.4771 1.2131 24 6 2.7618 -4.4889 1.2637 25 1 -0.4850 0.8401 -0.0004 26 1 2.4006 -5.5183 -1.3767 27 1 2.4079 -3.8864 -2.0961 28 1 4.6470 -3.4478 -1.1960 29 1 4.6879 -4.9857 -2.0915 30 1 8.8248 -3.4604 -0.0674 31 1 9.9153 -5.6632 -0.0040 32 1 8.5157 -7.7168 0.0641 33 1 4.6486 -3.4467 1.1955 34 1 4.6903 -4.9838 2.0927 35 1 2.4184 -3.8777 2.0983 36 1 2.4074 -5.5125 1.3858 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192963096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:51 Heat of formation + Delta-G solvation = -64.040675 kcal Electronic energy + Delta-G solvation = -24431.144356 eV Core-core repulsion = 20681.023494 eV Total energy + Delta-G solvation = -3750.120862 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.66756 -39.40641 -37.48348 -37.44698 -36.16428 -35.70357 -35.13379 -33.21197 -32.15522 -31.12308 -28.27132 -27.27196 -24.82134 -24.61971 -23.59305 -21.77377 -20.44744 -19.45886 -18.65270 -18.07542 -17.64543 -17.19502 -16.87750 -16.82807 -16.29844 -16.06158 -15.57426 -15.43214 -15.28511 -14.79014 -14.53998 -14.16088 -13.96975 -13.58519 -13.41545 -13.34892 -13.04697 -12.97604 -12.93143 -12.63596 -12.51435 -12.32403 -12.26860 -12.21015 -12.01632 -11.75498 -11.28044 -11.01015 -10.74994 -10.70556 -10.02240 -9.77457 -9.59327 -8.75937 -7.49451 -0.10602 0.14228 0.27144 1.18198 1.30176 1.31055 1.48868 2.18352 2.45564 2.55706 2.60563 2.80701 3.49924 3.76189 3.80010 3.86503 3.93010 3.99205 4.14303 4.16315 4.29667 4.35014 4.42026 4.48849 4.53305 4.64652 4.70234 4.90985 4.91263 5.02723 5.10176 5.12727 5.29705 5.44292 5.69897 5.89136 5.89625 6.15981 6.77009 6.84716 8.19524 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017874 B = 0.004065 C = 0.003521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.171676 B = 6886.217325 C = 7950.593749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.988 3.012 4 H -0.252 1.252 5 H -0.257 1.257 6 H -0.257 1.257 7 C -1.037 5.037 8 H 0.111 0.889 9 S 2.720 3.280 10 O -1.038 7.038 11 O -1.038 7.038 12 N -1.010 6.010 13 C 0.129 3.871 14 C 0.060 3.940 15 N -0.478 5.478 16 C 0.281 3.719 17 N -0.527 5.527 18 C 0.101 3.899 19 C -0.147 4.147 20 C -0.063 4.063 21 C -0.069 4.069 22 Cl -0.043 7.043 23 C 0.060 3.940 24 C 0.129 3.871 25 H 0.299 0.701 26 H 0.088 0.912 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.098 0.902 30 H 0.182 0.818 31 H 0.184 0.816 32 H 0.175 0.825 33 H 0.038 0.962 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.635 -12.857 0.073 25.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.806 3.194 4 H -0.176 1.176 5 H -0.181 1.181 6 H -0.181 1.181 7 C -1.170 5.170 8 H 0.129 0.871 9 S 2.822 3.178 10 O -1.028 7.028 11 O -1.028 7.028 12 N -0.849 5.849 13 C 0.004 3.996 14 C -0.068 4.068 15 N -0.201 5.201 16 C 0.052 3.948 17 N -0.240 5.240 18 C -0.058 4.058 19 C -0.166 4.166 20 C -0.090 4.090 21 C -0.100 4.100 22 Cl -0.015 7.015 23 C -0.068 4.068 24 C 0.004 3.996 25 H 0.109 0.891 26 H 0.106 0.894 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.116 0.884 30 H 0.199 0.801 31 H 0.202 0.798 32 H 0.193 0.807 33 H 0.057 0.943 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 19.763 -12.712 0.057 23.498 hybrid contribution 0.861 1.128 0.019 1.419 sum 20.624 -11.584 0.077 23.655 Atomic orbital electron populations 1.69989 1.08661 1.32260 1.41538 1.25969 0.95343 1.05185 0.87546 0.85135 0.79291 0.75370 0.79569 1.17567 1.18117 1.18130 1.30959 1.06721 1.12805 1.66527 0.87051 0.99999 0.72651 0.73587 0.71522 1.93293 1.74391 1.88286 1.46856 1.93292 1.74408 1.88293 1.46833 1.57798 1.61640 1.53354 1.12075 1.21584 0.92800 1.00220 0.85014 1.22447 0.95017 0.97326 0.92039 1.60098 1.05559 1.50849 1.03602 1.19776 0.89926 0.88277 0.96773 1.67955 1.08642 1.33595 1.13793 1.23239 0.89126 0.99737 0.93658 1.22564 1.03453 0.91258 0.99346 1.21931 0.89966 1.02163 0.94926 1.21844 0.93093 0.88245 1.06795 1.98380 1.68391 1.38149 1.96532 1.22378 0.95129 0.97235 0.92086 1.21487 0.92792 1.00312 0.85035 0.89067 0.89417 0.89830 0.94212 0.88389 0.80098 0.79827 0.80737 0.94318 0.88286 0.89825 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -54.06 13.19 21.45 0.28 -53.77 16 2 C 0.07 4.11 5.46 84.65 0.46 4.57 16 3 Si 0.99 42.33 29.54 68.60 2.03 44.36 16 4 H -0.25 -10.27 7.11 99.48 0.71 -9.57 16 5 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 6 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 7 C -1.04 -58.67 9.75 67.73 0.66 -58.01 16 8 H 0.11 5.87 7.81 -2.91 -0.02 5.84 16 9 S 2.72 150.51 4.98 -56.49 -0.28 150.23 16 10 O -1.04 -63.00 16.79 -128.00 -2.15 -65.15 16 11 O -1.04 -62.99 16.80 -128.00 -2.15 -65.14 16 12 N -1.01 -42.47 3.32 -511.36 -1.70 -44.17 16 13 C 0.13 4.59 6.56 86.51 0.57 5.16 16 14 C 0.06 1.86 5.40 86.54 0.47 2.33 16 15 N -0.48 -13.74 4.00 -699.91 -2.80 -16.55 16 16 C 0.28 7.15 5.28 133.06 0.70 7.86 16 17 N -0.53 -13.37 9.80 -193.15 -1.89 -15.26 16 18 C 0.10 1.66 11.17 84.63 0.95 2.61 16 19 C -0.15 -1.57 10.10 22.37 0.23 -1.34 16 20 C -0.06 -0.83 9.97 22.46 0.22 -0.61 16 21 C -0.07 -1.40 6.36 22.54 0.14 -1.26 16 22 Cl -0.04 -0.89 28.47 -2.72 -0.08 -0.97 16 23 C 0.06 1.85 5.43 86.38 0.47 2.32 16 24 C 0.13 4.59 6.53 86.35 0.56 5.15 16 25 H 0.30 16.18 8.31 -92.71 -0.77 15.41 16 26 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 27 H 0.08 3.17 7.21 -2.39 -0.02 3.15 16 28 H 0.04 1.38 8.04 -2.39 -0.02 1.36 16 29 H 0.10 2.59 8.09 -2.39 -0.02 2.57 16 30 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 31 H 0.18 0.46 8.06 -2.91 -0.02 0.44 16 32 H 0.18 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.04 1.34 8.09 -2.38 -0.02 1.32 16 34 H 0.10 2.60 8.09 -2.39 -0.02 2.58 16 35 H 0.08 3.16 7.22 -2.39 -0.02 3.15 16 36 H 0.09 2.74 8.14 -2.38 -0.02 2.72 16 Total: -1.00 -79.83 333.54 -2.20 -82.04 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 1.11 Total: 15.62 kcal Atomic # 6 Polarization: -36.66 SS G_CDS: 5.43 Total: -31.22 kcal Atomic # 7 Polarization: -123.64 SS G_CDS: -6.11 Total: -129.75 kcal Atomic # 8 Polarization: -126.00 SS G_CDS: -4.30 Total: -130.30 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: 150.51 SS G_CDS: -0.28 Total: 150.23 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -0.08 Total: -0.97 kcal Total: -79.83 -2.20 -82.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.994 kcal (2) G-P(sol) polarization free energy of solvation -79.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds