Wall clock time and date at job start Tue Mar 31 2020 16:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31565 * 1 3 3 Si 1.86801 * 119.99857 * 2 1 4 4 H 1.48495 * 109.47139 * 270.00115 * 3 2 1 5 5 H 1.48511 * 109.46978 * 29.99916 * 3 2 1 6 6 H 1.48494 * 109.47350 * 149.99588 * 3 2 1 7 7 C 1.38632 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00257 * 359.97438 * 7 2 1 9 9 O 1.34816 * 120.00079 * 180.02562 * 7 2 1 10 10 C 1.35751 * 116.99974 * 185.05753 * 9 7 2 11 11 C 1.38925 * 119.99993 * 354.45164 * 10 9 7 12 12 C 1.37980 * 120.00220 * 180.27639 * 11 10 9 13 13 C 1.38945 * 119.99720 * 359.45594 * 12 11 10 14 14 N 1.40005 * 120.00266 * 180.27613 * 13 12 11 15 15 C 1.37812 * 120.14565 * 295.24811 * 14 13 12 16 16 N 1.32468 * 135.07585 * 0.02562 * 15 14 13 17 17 C 1.32797 * 108.71170 * 179.97438 * 16 15 14 18 18 N 1.31621 * 110.15909 * 0.02562 * 17 16 15 19 19 C 1.34329 * 108.19023 * 359.97438 * 18 17 16 20 20 C 1.40628 * 135.16709 * 180.02562 * 19 18 17 21 21 N 1.37316 * 120.37942 * 359.97438 * 20 19 18 22 22 N 1.33507 * 119.23538 * 179.97438 * 20 19 18 23 23 C 1.31030 * 121.96897 * 359.77809 * 22 20 19 24 24 Cl 1.73599 * 118.86572 * 180.25234 * 23 22 20 25 25 C 1.38942 * 119.99454 * 0.52015 * 13 12 11 26 26 C 1.37977 * 120.00218 * 359.75791 * 25 13 12 27 27 H 0.97003 * 120.00367 * 359.97438 * 1 2 3 28 28 H 1.08000 * 120.00309 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.99999 * 179.73042 * 12 11 10 30 30 H 1.07997 * 124.92466 * 180.02562 * 17 16 15 31 31 H 0.96997 * 119.99964 * 0.02562 * 21 20 19 32 32 H 0.97005 * 119.99232 * 179.97438 * 21 20 19 33 33 H 1.08001 * 119.99897 * 179.76864 * 25 13 12 34 34 H 1.07997 * 120.00322 * 179.97438 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4971 2.0465 -1.4000 5 1 1.4469 2.6527 0.7001 6 1 3.5471 1.4403 0.7001 7 6 2.0088 -1.2006 -0.0005 8 1 1.4689 -2.1359 -0.0005 9 8 3.3570 -1.2006 0.0000 10 6 3.9734 -2.4053 -0.1072 11 6 3.2217 -3.5736 -0.0949 12 6 3.8486 -4.7985 -0.1981 13 6 5.2307 -4.8629 -0.3257 14 7 5.8664 -6.1054 -0.4363 15 6 5.8270 -6.9987 0.6123 16 7 5.2931 -6.9990 1.8246 17 6 5.5782 -8.1536 2.4155 18 7 6.2917 -8.9114 1.6098 19 6 6.4806 -8.2408 0.4613 20 6 7.1404 -8.5066 -0.7518 21 7 7.7895 -9.7016 -0.9420 22 7 7.1285 -7.5836 -1.7164 23 6 6.5155 -6.4349 -1.5699 24 17 6.5457 -5.2958 -2.8795 25 6 5.9823 -3.6943 -0.3386 26 6 5.3558 -2.4698 -0.2296 27 1 -0.4851 0.8400 0.0004 28 1 2.1470 -3.5234 -0.0005 29 1 3.2646 -5.7069 -0.1842 30 1 5.2694 -8.4308 3.4125 31 1 7.7943 -10.3684 -0.2375 32 1 8.2425 -9.8792 -1.7812 33 1 7.0569 -3.7445 -0.4340 34 1 5.9400 -1.5616 -0.2391 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212606231.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:32:13 Heat of formation + Delta-G solvation = 107.073899 kcal Electronic energy + Delta-G solvation = -24680.586118 eV Core-core repulsion = 20834.734140 eV Total energy + Delta-G solvation = -3845.851978 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 331.058 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.65442 -41.37409 -40.62237 -39.15079 -38.45034 -37.26983 -34.75070 -34.36180 -32.23141 -31.91453 -30.88019 -29.83023 -27.42986 -25.70441 -25.01666 -23.93344 -23.59035 -21.64898 -20.45509 -19.92204 -19.49777 -19.27411 -18.57551 -17.77858 -17.64526 -16.79915 -16.63415 -16.16349 -15.96528 -15.83534 -15.66088 -15.04501 -14.92448 -14.65957 -14.55936 -14.28303 -13.95343 -13.71829 -13.45212 -12.96116 -12.87041 -12.64509 -12.42324 -12.10546 -12.02163 -11.63181 -11.45894 -11.11363 -10.94904 -10.54555 -10.17654 -10.09416 -9.36341 -9.00311 -8.54334 -6.28496 -1.15223 -0.47797 0.15400 0.24617 0.32741 0.99973 1.35324 1.38002 1.54389 1.89370 2.18654 2.26638 2.41369 2.50591 2.83885 2.89103 2.99623 3.16841 3.44891 3.77920 3.81615 3.99399 4.21373 4.27556 4.38372 4.52339 4.74481 4.95258 5.11489 5.20797 5.29625 5.36321 5.60412 5.61827 5.69262 5.79191 5.91212 6.01856 6.08316 6.56086 6.78059 7.26424 7.43344 8.56056 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.003272 C = 0.002974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.076279 B = 8556.507948 C = 9412.896847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.016 3.984 3 Si 0.969 3.031 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.257 1.257 7 C -0.404 4.404 8 H 0.086 0.914 9 O -0.222 6.222 10 C 0.154 3.846 11 C -0.220 4.220 12 C -0.026 4.026 13 C -0.017 4.017 14 N -0.352 5.352 15 C 0.207 3.793 16 N -0.558 5.558 17 C 0.179 3.821 18 N -0.508 5.508 19 C -0.133 4.133 20 C 0.554 3.446 21 N -0.756 5.756 22 N -0.549 5.549 23 C 0.462 3.538 24 Cl 0.091 6.909 25 C -0.037 4.037 26 C -0.166 4.166 27 H 0.287 0.713 28 H 0.124 0.876 29 H 0.119 0.881 30 H 0.221 0.779 31 H 0.437 0.563 32 H 0.431 0.569 33 H 0.157 0.843 34 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.329 -14.736 -6.780 24.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.791 3.209 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.181 1.181 7 C -0.480 4.480 8 H 0.103 0.897 9 O -0.128 6.128 10 C 0.103 3.897 11 C -0.240 4.240 12 C -0.045 4.045 13 C -0.107 4.107 14 N -0.038 5.038 15 C -0.043 4.043 16 N -0.282 5.282 17 C -0.113 4.113 18 N -0.228 5.228 19 C -0.273 4.273 20 C 0.303 3.697 21 N -0.292 5.292 22 N -0.283 5.283 23 C 0.173 3.827 24 Cl 0.120 6.880 25 C -0.056 4.056 26 C -0.186 4.186 27 H 0.097 0.903 28 H 0.142 0.858 29 H 0.137 0.863 30 H 0.238 0.762 31 H 0.272 0.728 32 H 0.266 0.734 33 H 0.175 0.825 34 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.389 -14.698 -6.834 24.513 hybrid contribution -0.844 0.569 0.439 1.109 sum 17.544 -14.129 -6.395 23.416 Atomic orbital electron populations 1.69725 1.07115 1.29980 1.48545 1.25309 0.95820 1.02346 0.94937 0.85230 0.79011 0.77101 0.79553 1.18648 1.19612 1.18064 1.20733 0.77690 0.96403 1.53128 0.89650 1.83531 1.21605 1.26929 1.80699 1.19687 0.93071 0.84894 0.92080 1.21061 1.00902 0.91664 1.10363 1.20582 0.92295 0.97115 0.94522 1.17503 0.91784 0.82750 1.18657 1.41150 1.39576 1.13667 1.09384 1.19836 1.03986 0.89577 0.90877 1.70099 1.27200 1.26516 1.04368 1.25433 0.98296 0.86523 1.01062 1.70476 1.19694 1.32286 1.00356 1.20319 1.12839 0.95963 0.98168 1.17734 0.81884 0.85892 0.84162 1.42222 1.51493 1.12763 1.22765 1.67478 1.29312 1.01239 1.30259 1.23133 0.86800 0.89962 0.82782 1.98550 1.95873 1.53984 1.39621 1.20835 1.00035 0.89081 0.95638 1.20340 0.90483 0.99015 1.08724 0.90299 0.85849 0.86327 0.76246 0.72821 0.73389 0.82497 0.82571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.16 13.96 21.61 0.30 -51.86 16 2 C 0.02 0.87 5.49 84.83 0.47 1.34 16 3 Si 0.97 42.21 28.62 68.60 1.96 44.17 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.40 -22.14 9.94 67.91 0.68 -21.47 16 8 H 0.09 4.93 5.43 -2.91 -0.02 4.92 16 9 O -0.22 -10.92 8.58 -22.62 -0.19 -11.11 16 10 C 0.15 6.46 6.65 22.60 0.15 6.61 16 11 C -0.22 -9.10 9.16 22.37 0.20 -8.89 16 12 C -0.03 -0.93 9.76 22.38 0.22 -0.71 16 13 C -0.02 -0.53 4.55 38.17 0.17 -0.36 16 14 N -0.35 -10.32 2.72 -338.21 -0.92 -11.24 16 15 C 0.21 6.96 7.52 133.95 1.01 7.96 16 16 N -0.56 -20.79 11.31 -196.66 -2.23 -23.02 16 17 C 0.18 5.77 12.89 180.63 2.33 8.09 16 18 N -0.51 -15.56 11.38 -193.18 -2.20 -17.76 16 19 C -0.13 -3.89 7.16 40.06 0.29 -3.60 16 20 C 0.55 11.58 7.83 133.66 1.05 12.63 16 21 N -0.76 -8.17 8.99 -54.91 -0.49 -8.66 16 22 N -0.55 -11.33 10.33 -186.69 -1.93 -13.25 16 23 C 0.46 10.84 7.93 180.21 1.43 12.27 16 24 Cl 0.09 1.75 26.93 -2.72 -0.07 1.67 16 25 C -0.04 -1.04 8.54 22.38 0.19 -0.85 16 26 C -0.17 -5.44 9.99 22.38 0.22 -5.22 16 27 H 0.29 15.01 8.31 -92.71 -0.77 14.24 16 28 H 0.12 5.61 5.63 -2.91 -0.02 5.59 16 29 H 0.12 4.21 8.06 -2.91 -0.02 4.19 16 30 H 0.22 5.55 8.06 -2.91 -0.02 5.52 16 31 H 0.44 3.94 8.83 -92.71 -0.82 3.12 16 32 H 0.43 1.95 8.95 -92.70 -0.83 1.12 16 33 H 0.16 3.38 8.06 -2.91 -0.02 3.36 16 34 H 0.16 4.35 8.06 -2.91 -0.02 4.32 16 Total: -1.00 -70.05 320.93 2.21 -67.84 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.42 Total: 15.41 kcal Atomic # 6 Polarization: -0.59 SS G_CDS: 8.40 Total: 7.81 kcal Atomic # 7 Polarization: -118.33 SS G_CDS: -7.46 Total: -125.79 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: -0.19 Total: -11.11 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 1.96 Total: 44.17 kcal Atomic # 17 Polarization: 1.75 SS G_CDS: -0.07 Total: 1.67 kcal Total: -70.05 2.21 -67.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212606231.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.913 kcal (2) G-P(sol) polarization free energy of solvation -70.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds