Wall clock time and date at job start Tue Mar 31 2020 15:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.34971 * 117.00058 * 2 1 4 4 O 1.21707 * 119.99978 * 359.97438 * 3 2 1 5 5 C 1.41469 * 119.99895 * 179.97438 * 3 2 1 6 6 S 1.75813 * 125.47713 * 0.14669 * 5 3 2 7 7 C 1.70576 * 91.67556 * 180.20406 * 6 5 3 8 8 C 1.33683 * 111.16241 * 359.80752 * 7 6 5 9 9 Cl 1.73595 * 122.46067 * 179.97438 * 8 7 6 10 10 C 1.37402 * 125.47284 * 179.97438 * 5 3 2 11 11 O 1.35779 * 123.48247 * 359.97438 * 10 5 3 12 12 C 1.42895 * 117.00355 * 269.73249 * 11 10 5 13 13 C 1.53514 * 114.17121 * 210.00185 * 12 11 10 14 14 N 1.47483 * 87.92777 * 220.32774 * 13 12 11 15 15 C 1.46903 * 110.99717 * 138.70421 * 14 13 12 16 16 C 1.50694 * 109.47066 * 169.99804 * 15 14 13 17 17 H 1.08000 * 120.00563 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99902 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99913 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99766 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 179.97438 * 20 18 16 22 22 H 1.48494 * 109.47276 * 299.99832 * 20 18 16 23 23 H 1.48498 * 109.47150 * 60.00043 * 20 18 16 24 24 C 1.47480 * 87.83900 * 27.00973 * 14 13 12 25 25 H 1.08993 * 109.47629 * 300.00125 * 1 2 3 26 26 H 1.08998 * 109.46986 * 60.00797 * 1 2 3 27 27 H 1.09004 * 109.46958 * 180.02562 * 1 2 3 28 28 H 1.07999 * 124.41914 * 179.78643 * 7 6 5 29 29 H 1.09011 * 113.25486 * 342.95268 * 12 11 10 30 30 H 1.09000 * 113.47331 * 105.56452 * 13 12 11 31 31 H 1.08995 * 113.52785 * 335.10042 * 13 12 11 32 32 H 1.09007 * 109.47052 * 49.99488 * 15 14 13 33 33 H 1.09003 * 109.46808 * 290.00181 * 15 14 13 34 34 H 0.97001 * 119.99646 * 179.97438 * 19 18 16 35 35 H 1.09004 * 113.47132 * 87.75237 * 24 14 13 36 36 H 1.09000 * 113.47538 * 218.21976 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0418 1.2026 0.0000 4 8 1.3789 2.2233 -0.0005 5 6 3.4545 1.2766 0.0005 6 16 4.5484 -0.0998 -0.0024 7 6 5.9142 0.9220 0.0064 8 6 5.5539 2.2093 0.0070 9 17 6.7133 3.5013 0.0160 10 6 4.1923 2.4358 0.0001 11 8 3.6391 3.6757 -0.0014 12 6 3.3812 4.2696 -1.2753 13 6 3.4642 5.8024 -1.2827 14 7 2.2832 5.8087 -2.1661 15 6 1.3459 6.8735 -1.7842 16 6 0.2830 7.0108 -2.8436 17 1 0.3020 6.3714 -3.7137 18 6 -0.7132 7.9535 -2.7025 19 7 -0.7361 8.7326 -1.6431 20 14 -2.0304 8.1242 -4.0160 21 1 -2.9780 9.2005 -3.6300 22 1 -1.3942 8.4660 -5.3135 23 1 -2.7665 6.8413 -4.1484 24 6 1.8942 4.5206 -1.5623 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 6.9367 0.5742 0.0113 29 1 3.9214 3.7893 -2.0913 30 1 4.3657 6.1861 -1.7603 31 1 3.2794 6.2529 -0.3075 32 1 1.8860 7.8154 -1.6871 33 1 0.8794 6.6225 -0.8316 34 1 -1.4368 9.3960 -1.5441 35 1 1.2902 4.6283 -0.6613 36 1 1.4651 3.8182 -2.2768 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228777623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:51 Heat of formation + Delta-G solvation = -63.846358 kcal Electronic energy + Delta-G solvation = -23802.063020 eV Core-core repulsion = 20019.657833 eV Total energy + Delta-G solvation = -3782.405187 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -41.97169 -41.19901 -39.92114 -37.78326 -37.48550 -36.52251 -35.02017 -31.74614 -31.15230 -28.59702 -27.38082 -26.88174 -25.94827 -23.71841 -23.24239 -21.20472 -20.85447 -20.20354 -18.78563 -18.48382 -17.80171 -17.70961 -17.30919 -16.86839 -16.41318 -16.31696 -15.88569 -15.55033 -15.03862 -14.97257 -14.49240 -14.29890 -14.15067 -13.96954 -13.70638 -13.32017 -13.14361 -13.00961 -12.76613 -12.58291 -12.43805 -12.41353 -12.21107 -11.93021 -11.80486 -11.74287 -11.70379 -11.30287 -10.83627 -10.64329 -10.14353 -9.84124 -9.43767 -8.25520 -6.36896 -1.06541 0.08447 0.33431 0.67374 1.33495 1.37135 1.41933 1.50034 1.59958 1.80718 2.36309 2.48175 3.06069 3.24738 3.34951 3.62466 3.80735 3.81532 4.08063 4.26629 4.31729 4.32648 4.42216 4.44333 4.57011 4.64753 4.70152 4.75020 4.80061 4.83463 5.01607 5.27791 5.50077 5.68712 6.00053 6.19917 6.33875 6.62774 6.75772 7.32242 8.86123 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.003635 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.907126 B = 7701.594413 C = 9374.461023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.351 6.351 3 C 0.529 3.471 4 O -0.510 6.510 5 C -0.335 4.335 6 S 0.414 5.586 7 C -0.195 4.195 8 C -0.111 4.111 9 Cl -0.035 7.035 10 C 0.167 3.833 11 O -0.307 6.307 12 C 0.095 3.905 13 C 0.003 3.997 14 N -0.477 5.477 15 C 0.179 3.821 16 C -0.530 4.530 17 H 0.060 0.940 18 C 0.001 3.999 19 N -0.934 5.934 20 Si 0.975 3.025 21 H -0.278 1.278 22 H -0.264 1.264 23 H -0.269 1.269 24 C 0.017 3.983 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.143 0.857 28 H 0.226 0.774 29 H 0.117 0.883 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.007 0.993 33 H -0.026 1.026 34 H 0.266 0.734 35 H 0.051 0.949 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.871 -25.354 4.571 29.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.268 6.268 3 C 0.375 3.625 4 O -0.401 6.401 5 C -0.453 4.453 6 S 0.682 5.318 7 C -0.335 4.335 8 C -0.150 4.150 9 Cl -0.007 7.007 10 C 0.106 3.894 11 O -0.222 6.222 12 C 0.038 3.962 13 C -0.126 4.126 14 N -0.201 5.201 15 C 0.052 3.948 16 C -0.568 4.568 17 H 0.078 0.922 18 C -0.197 4.197 19 N -0.574 5.574 20 Si 0.799 3.201 21 H -0.203 1.203 22 H -0.189 1.189 23 H -0.194 1.194 24 C -0.113 4.113 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.161 0.839 28 H 0.243 0.757 29 H 0.135 0.865 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.025 0.975 33 H -0.008 1.008 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.451 -26.190 4.084 30.189 hybrid contribution -1.026 2.579 0.563 2.832 sum 13.425 -23.611 4.647 27.555 Atomic orbital electron populations 1.23167 0.75034 1.05907 1.02120 1.86117 1.24932 1.31098 1.84687 1.18467 0.87785 0.82289 0.73952 1.91052 1.66818 1.36469 1.45732 1.22905 0.96238 1.00990 1.25185 1.82942 0.87271 1.00288 1.61320 1.25798 1.09279 0.95415 1.02967 1.19648 0.89413 0.91764 1.14195 1.98389 1.56268 1.48738 1.97275 1.17977 0.89493 0.85197 0.96770 1.86065 1.79946 1.26604 1.29603 1.24025 0.95466 0.92970 0.83703 1.24088 0.97295 0.94249 0.97010 1.68911 1.05753 1.03326 1.42116 1.19901 0.90980 0.89823 0.94084 1.21362 1.10059 1.18879 1.06507 0.92202 1.25997 1.00433 0.94934 0.98366 1.70087 1.35137 1.22333 1.29892 0.85354 0.77944 0.78007 0.78820 1.20323 1.18917 1.19374 1.23997 0.96710 0.93002 0.97548 0.92680 0.92891 0.83945 0.75722 0.86533 0.87501 0.92228 0.97523 1.00844 0.92478 0.93068 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.45 113.37 1.18 1.76 16 2 O -0.35 -7.87 10.23 -58.89 -0.60 -8.48 16 3 C 0.53 15.28 7.72 68.62 0.53 15.81 16 4 O -0.51 -19.29 13.31 25.01 0.33 -18.95 16 5 C -0.33 -8.08 6.28 22.87 0.14 -7.94 16 6 S 0.41 4.82 22.82 -56.49 -1.29 3.54 16 7 C -0.20 -2.28 10.75 66.79 0.72 -1.56 16 8 C -0.11 -2.27 6.26 21.19 0.13 -2.13 16 9 Cl -0.04 -0.75 28.93 -2.72 -0.08 -0.83 16 10 C 0.17 4.56 5.72 22.02 0.13 4.68 16 11 O -0.31 -10.77 8.89 -74.29 -0.66 -11.43 16 12 C 0.09 3.43 4.64 30.94 0.14 3.57 16 13 C 0.00 0.10 7.52 83.58 0.63 0.73 16 14 N -0.48 -23.17 6.32 -932.86 -5.89 -29.06 16 15 C 0.18 10.47 4.57 85.55 0.39 10.86 16 16 C -0.53 -32.55 9.39 25.60 0.24 -32.31 16 17 H 0.06 3.62 7.81 -2.91 -0.02 3.60 16 18 C 0.00 0.05 5.46 84.66 0.46 0.51 16 19 N -0.93 -59.06 13.29 21.45 0.28 -58.78 16 20 Si 0.98 46.41 29.54 68.60 2.03 48.44 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 22 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 23 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 24 C 0.02 0.75 5.87 83.58 0.49 1.24 16 25 H 0.05 1.11 8.13 -2.39 -0.02 1.09 16 26 H 0.05 1.12 8.13 -2.39 -0.02 1.10 16 27 H 0.14 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.23 0.82 8.06 -2.91 -0.02 0.80 16 29 H 0.12 3.68 7.96 -2.38 -0.02 3.66 16 30 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 31 H 0.06 2.54 7.91 -2.39 -0.02 2.52 16 32 H 0.01 0.41 8.08 -2.38 -0.02 0.39 16 33 H -0.03 -1.67 7.30 -2.39 -0.02 -1.69 16 34 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 35 H 0.05 2.61 6.94 -2.39 -0.02 2.59 16 36 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -78.52 342.31 0.43 -78.09 By element: Atomic # 1 Polarization: 1.12 SS G_CDS: 1.12 Total: 2.24 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: 5.19 Total: -4.77 kcal Atomic # 7 Polarization: -82.23 SS G_CDS: -5.61 Total: -87.84 kcal Atomic # 8 Polarization: -37.93 SS G_CDS: -0.93 Total: -38.86 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.29 Total: 3.54 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.08 Total: -0.83 kcal Total: -78.52 0.43 -78.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228777623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.248 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds