Wall clock time and date at job start Tue Mar 31 2020 15:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34977 * 116.99586 * 2 1 4 4 O 1.21710 * 120.00028 * 0.02562 * 3 2 1 5 5 C 1.41475 * 119.99864 * 179.97438 * 3 2 1 6 6 S 1.75819 * 125.47286 * 2.95481 * 5 3 2 7 7 C 1.70571 * 91.67342 * 179.97438 * 6 5 3 8 8 C 1.33678 * 111.16141 * 359.75089 * 7 6 5 9 9 Cl 1.73606 * 122.45824 * 180.25455 * 8 7 6 10 10 C 1.37393 * 125.47495 * 182.92712 * 5 3 2 11 11 O 1.35775 * 123.48420 * 0.02562 * 10 5 3 12 12 C 1.42901 * 116.99641 * 272.87194 * 11 10 5 13 13 H 1.09002 * 110.64345 * 26.74696 * 12 11 10 14 14 C 1.55157 * 110.72039 * 149.89255 * 12 11 10 15 15 C 1.54908 * 101.58334 * 153.86781 * 14 12 11 16 16 N 1.47429 * 104.82964 * 322.98763 * 15 14 12 17 17 C 1.36928 * 125.64808 * 204.09225 * 16 15 14 18 18 H 1.07998 * 120.00290 * 7.37398 * 17 16 15 19 19 C 1.38821 * 119.99978 * 187.37243 * 17 16 15 20 20 N 1.31614 * 119.99993 * 7.21651 * 19 17 16 21 21 Si 1.86800 * 119.99795 * 187.22039 * 19 17 16 22 22 H 1.48501 * 109.46817 * 265.03676 * 21 19 17 23 23 H 1.48493 * 109.47368 * 25.03794 * 21 19 17 24 24 H 1.48499 * 109.46954 * 145.03974 * 21 19 17 25 25 C 1.47026 * 108.70300 * 24.36052 * 16 15 14 26 26 H 1.08998 * 109.47588 * 299.99841 * 1 2 3 27 27 H 1.08996 * 109.47331 * 60.00316 * 1 2 3 28 28 H 1.09003 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08000 * 124.41589 * 179.97438 * 7 6 5 30 30 H 1.08996 * 111.00402 * 35.78497 * 14 12 11 31 31 H 1.09004 * 111.00017 * 271.94030 * 14 12 11 32 32 H 1.08994 * 110.36562 * 204.15353 * 15 14 12 33 33 H 1.09003 * 110.46386 * 81.87117 * 15 14 12 34 34 H 0.96996 * 119.99775 * 180.02562 * 20 19 17 35 35 H 1.08992 * 109.88629 * 118.12621 * 25 16 15 36 36 H 1.09001 * 109.88166 * 239.29617 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3788 2.2234 0.0005 5 6 3.4545 1.2768 0.0005 6 16 4.5484 -0.0977 -0.0725 7 6 5.9142 0.9229 -0.0241 8 6 5.5538 2.2087 0.0371 9 17 6.7133 3.4996 0.0920 10 6 4.1922 2.4345 0.0577 11 8 3.6391 3.6728 0.1225 12 6 3.3132 4.3033 -1.1178 13 1 3.1175 3.5575 -1.8883 14 6 2.0960 5.2505 -0.9489 15 6 2.3371 6.2728 -2.0875 16 7 3.7993 6.4567 -2.1262 17 6 4.4527 7.5568 -2.6140 18 1 3.8922 8.4331 -2.9045 19 6 5.8355 7.5458 -2.7350 20 7 6.5064 6.4346 -2.5172 21 14 6.7442 9.1081 -3.2071 22 1 6.9695 9.1254 -4.6748 23 1 5.9335 10.2894 -2.8168 24 1 8.0520 9.1514 -2.5050 25 6 4.4401 5.2606 -1.5601 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 6.9367 0.5757 -0.0441 30 1 2.1135 5.7392 0.0252 31 1 1.1593 4.7133 -1.0980 32 1 1.8419 7.2169 -1.8607 33 1 1.9794 5.8763 -3.0378 34 1 7.4726 6.4270 -2.6014 35 1 5.0618 4.7804 -2.3157 36 1 5.0476 5.5381 -0.6987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228779086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:31 Heat of formation + Delta-G solvation = -52.133053 kcal Electronic energy + Delta-G solvation = -24444.244309 eV Core-core repulsion = 20662.347049 eV Total energy + Delta-G solvation = -3781.897260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.71759 -39.42019 -37.35583 -36.51347 -35.99100 -35.06097 -32.23267 -30.56721 -28.96804 -27.73848 -27.23912 -25.11622 -24.12843 -22.13745 -20.59231 -20.20145 -19.36126 -19.14752 -17.33965 -16.91198 -16.57658 -16.55862 -15.86093 -15.22633 -15.14991 -14.45802 -13.97953 -13.84187 -13.68114 -13.44759 -13.15965 -12.62370 -12.30799 -12.21520 -12.00094 -11.76989 -11.65110 -11.36489 -11.09610 -10.99903 -10.83160 -10.76991 -10.63783 -10.55999 -10.39935 -9.93136 -9.80342 -9.69802 -9.17764 -8.96109 -8.57077 -8.33310 -6.76141 -5.63518 -2.99892 0.05675 1.12176 1.43713 1.87827 2.50402 2.77325 2.87988 3.43360 3.49058 3.51001 3.92279 4.54833 4.70866 4.94630 5.00596 5.07463 5.17236 5.35982 5.40376 5.42401 5.55648 5.57610 5.77222 5.84658 5.90969 6.19992 6.26745 6.39877 6.66079 6.68551 6.94186 7.35916 7.63825 7.70569 7.83402 7.91610 8.30860 9.25490 9.87140 10.53194 11.45499 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.004467 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.271960 B = 6266.640951 C = 7742.825962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.359 6.359 3 C 0.539 3.461 4 O -0.475 6.475 5 C -0.312 4.312 6 S 0.285 5.715 7 C -0.216 4.216 8 C -0.088 4.088 9 Cl 0.002 6.998 10 C 0.212 3.788 11 O -0.293 6.293 12 C 0.079 3.921 13 H 0.059 0.941 14 C -0.119 4.119 15 C 0.132 3.868 16 N -0.603 5.603 17 C -0.229 4.229 18 H 0.078 0.922 19 C -0.006 4.006 20 N -0.912 5.912 21 Si 0.909 3.091 22 H -0.290 1.290 23 H -0.282 1.282 24 H -0.291 1.291 25 C 0.159 3.841 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.185 0.815 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.019 0.981 34 H 0.250 0.750 35 H 0.064 0.936 36 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.801 -17.889 6.127 19.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.276 6.276 3 C 0.384 3.616 4 O -0.363 6.363 5 C -0.430 4.430 6 S 0.551 5.449 7 C -0.355 4.355 8 C -0.128 4.128 9 Cl 0.031 6.969 10 C 0.150 3.850 11 O -0.209 6.209 12 C 0.023 3.977 13 H 0.078 0.922 14 C -0.158 4.158 15 C 0.006 3.994 16 N -0.330 5.330 17 C -0.357 4.357 18 H 0.096 0.904 19 C -0.202 4.202 20 N -0.559 5.559 21 Si 0.739 3.261 22 H -0.218 1.218 23 H -0.207 1.207 24 H -0.217 1.217 25 C 0.034 3.966 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.119 0.881 29 H 0.203 0.797 30 H 0.093 0.907 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -5.948 -18.869 6.171 20.725 hybrid contribution 0.850 2.369 -0.304 2.535 sum -5.099 -16.500 5.867 18.240 Atomic orbital electron populations 1.22870 0.76556 1.03494 1.02667 1.86157 1.23548 1.32676 1.85264 1.18068 0.87019 0.82033 0.74497 1.90982 1.65718 1.35106 1.44538 1.22618 0.95756 0.98960 1.25706 1.83044 0.90741 1.04637 1.66471 1.25209 1.06636 0.96639 1.07029 1.19959 0.91645 0.91557 1.09659 1.98480 1.55641 1.46234 1.96567 1.17685 0.88423 0.86218 0.92670 1.85980 1.79052 1.24414 1.31442 1.23938 0.97922 0.93990 0.81804 0.92238 1.22796 0.96008 0.96554 1.00415 1.21594 0.87207 0.96081 0.94482 1.44367 0.99262 1.17326 1.72091 1.19035 0.89576 0.91114 1.35989 0.90427 1.24793 0.96431 0.97232 1.01787 1.69949 1.06368 1.24442 1.55153 0.86151 0.79374 0.82716 0.77822 1.21751 1.20711 1.21747 1.21714 0.90657 0.86014 0.98241 0.92047 0.91995 0.88118 0.79735 0.90652 0.91167 0.93657 0.96307 0.93927 0.91783 0.93078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.45 101.05 1.06 1.40 16 2 O -0.36 -4.36 10.23 -41.25 -0.42 -4.79 16 3 C 0.54 8.21 7.72 31.96 0.25 8.46 16 4 O -0.48 -8.46 15.14 -25.54 -0.39 -8.85 16 5 C -0.31 -4.66 6.28 -38.66 -0.24 -4.91 16 6 S 0.28 2.97 22.82 -107.50 -2.45 0.52 16 7 C -0.22 -2.53 10.75 29.13 0.31 -2.22 16 8 C -0.09 -1.39 6.26 -41.25 -0.26 -1.65 16 9 Cl 0.00 0.04 27.60 -51.86 -1.43 -1.40 16 10 C 0.21 3.70 5.69 -39.96 -0.23 3.47 16 11 O -0.29 -5.99 8.65 -36.54 -0.32 -6.31 16 12 C 0.08 1.69 2.93 -24.89 -0.07 1.62 16 13 H 0.06 1.25 7.92 -51.93 -0.41 0.84 16 14 C -0.12 -2.40 6.81 -24.58 -0.17 -2.57 16 15 C 0.13 2.92 7.23 -2.53 -0.02 2.90 16 16 N -0.60 -16.04 3.39 -170.06 -0.58 -16.62 16 17 C -0.23 -6.51 10.26 -15.06 -0.15 -6.67 16 18 H 0.08 2.13 7.84 -52.49 -0.41 1.72 16 19 C -0.01 -0.16 5.45 -17.43 -0.09 -0.26 16 20 N -0.91 -26.54 10.49 55.49 0.58 -25.96 16 21 Si 0.91 22.38 29.56 -169.99 -5.02 17.35 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 25 C 0.16 4.00 4.68 -3.06 -0.01 3.99 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 27 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 28 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.19 1.60 8.06 -52.49 -0.42 1.17 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.06 1.78 6.96 -51.93 -0.36 1.42 16 36 H 0.05 1.40 7.07 -51.93 -0.37 1.04 16 LS Contribution 336.82 15.07 5.08 5.08 Total: -1.00 -32.81 336.82 -8.65 -41.47 By element: Atomic # 1 Polarization: 0.00 SS G_CDS: -4.07 Total: -4.06 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 0.36 Total: 3.56 kcal Atomic # 7 Polarization: -42.58 SS G_CDS: 0.00 Total: -42.57 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -1.12 Total: -19.94 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.35 kcal Atomic # 16 Polarization: 2.97 SS G_CDS: -2.45 Total: 0.52 kcal Atomic # 17 Polarization: 0.04 SS G_CDS: -1.43 Total: -1.40 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.81 -8.65 -41.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228779086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.666 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds