Wall clock time and date at job start Tue Mar 31 2020 15:49:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.34977 * 116.99586 * 2 1 4 4 O 1.21710 * 120.00028 * 0.02562 * 3 2 1 5 5 C 1.41475 * 119.99864 * 179.97438 * 3 2 1 6 6 S 1.75819 * 125.47286 * 2.95481 * 5 3 2 7 7 C 1.70571 * 91.67342 * 179.97438 * 6 5 3 8 8 C 1.33678 * 111.16141 * 359.75089 * 7 6 5 9 9 Cl 1.73606 * 122.45824 * 180.25455 * 8 7 6 10 10 C 1.37393 * 125.47495 * 182.92712 * 5 3 2 11 11 O 1.35775 * 123.48420 * 0.02562 * 10 5 3 12 12 C 1.42901 * 116.99641 * 272.87194 * 11 10 5 13 13 H 1.09002 * 110.64345 * 26.74696 * 12 11 10 14 14 C 1.55157 * 110.72039 * 149.89255 * 12 11 10 15 15 C 1.54908 * 101.58334 * 153.86781 * 14 12 11 16 16 N 1.47429 * 104.82964 * 322.98763 * 15 14 12 17 17 C 1.36928 * 125.64808 * 204.09225 * 16 15 14 18 18 H 1.07998 * 120.00290 * 7.37398 * 17 16 15 19 19 C 1.38821 * 119.99978 * 187.37243 * 17 16 15 20 20 N 1.31614 * 119.99993 * 7.21651 * 19 17 16 21 21 Si 1.86800 * 119.99795 * 187.22039 * 19 17 16 22 22 H 1.48501 * 109.46817 * 265.03676 * 21 19 17 23 23 H 1.48493 * 109.47368 * 25.03794 * 21 19 17 24 24 H 1.48499 * 109.46954 * 145.03974 * 21 19 17 25 25 C 1.47026 * 108.70300 * 24.36052 * 16 15 14 26 26 H 1.08998 * 109.47588 * 299.99841 * 1 2 3 27 27 H 1.08996 * 109.47331 * 60.00316 * 1 2 3 28 28 H 1.09003 * 109.47189 * 180.02562 * 1 2 3 29 29 H 1.08000 * 124.41589 * 179.97438 * 7 6 5 30 30 H 1.08996 * 111.00402 * 35.78497 * 14 12 11 31 31 H 1.09004 * 111.00017 * 271.94030 * 14 12 11 32 32 H 1.08994 * 110.36562 * 204.15353 * 15 14 12 33 33 H 1.09003 * 110.46386 * 81.87117 * 15 14 12 34 34 H 0.96996 * 119.99775 * 180.02562 * 20 19 17 35 35 H 1.08992 * 109.88629 * 118.12621 * 25 16 15 36 36 H 1.09001 * 109.88166 * 239.29617 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0417 1.2027 0.0000 4 8 1.3788 2.2234 0.0005 5 6 3.4545 1.2768 0.0005 6 16 4.5484 -0.0977 -0.0725 7 6 5.9142 0.9229 -0.0241 8 6 5.5538 2.2087 0.0371 9 17 6.7133 3.4996 0.0920 10 6 4.1922 2.4345 0.0577 11 8 3.6391 3.6728 0.1225 12 6 3.3132 4.3033 -1.1178 13 1 3.1175 3.5575 -1.8883 14 6 2.0960 5.2505 -0.9489 15 6 2.3371 6.2728 -2.0875 16 7 3.7993 6.4567 -2.1262 17 6 4.4527 7.5568 -2.6140 18 1 3.8922 8.4331 -2.9045 19 6 5.8355 7.5458 -2.7350 20 7 6.5064 6.4346 -2.5172 21 14 6.7442 9.1081 -3.2071 22 1 6.9695 9.1254 -4.6748 23 1 5.9335 10.2894 -2.8168 24 1 8.0520 9.1514 -2.5050 25 6 4.4401 5.2606 -1.5601 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 6.9367 0.5757 -0.0441 30 1 2.1135 5.7392 0.0252 31 1 1.1593 4.7133 -1.0980 32 1 1.8419 7.2169 -1.8607 33 1 1.9794 5.8763 -3.0378 34 1 7.4726 6.4270 -2.6014 35 1 5.0618 4.7804 -2.3157 36 1 5.0476 5.5381 -0.6987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. SCF OSCILLATION -- NSTAR INDEX INCREASED BY ONE CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228779086.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:22 Heat of formation + Delta-G solvation = -71.819118 kcal Electronic energy + Delta-G solvation = -24445.097961 eV Core-core repulsion = 20662.347049 eV Total energy + Delta-G solvation = -3782.750912 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.048 amu Computer time = 8.38 seconds Orbital eigenvalues (eV) -41.85071 -40.69643 -38.92378 -37.66447 -37.35531 -36.43047 -34.25139 -31.68671 -30.87157 -29.24484 -28.44286 -26.64798 -25.72638 -23.20880 -22.25917 -22.02110 -20.73393 -20.19565 -18.90996 -18.54573 -17.70146 -17.62632 -17.15050 -17.01305 -16.40657 -15.96252 -15.55969 -15.20481 -15.04154 -14.53705 -14.36012 -14.25589 -14.10045 -13.64741 -13.55642 -13.21308 -12.97584 -12.90719 -12.71907 -12.51332 -12.42078 -12.31900 -11.99691 -11.78699 -11.75136 -11.73879 -11.66428 -11.50276 -10.81188 -10.69504 -10.09338 -9.37938 -8.86643 -7.77561 -5.17794 -1.05322 0.13268 0.36088 0.71397 1.41985 1.46571 1.48239 1.57312 1.61753 1.83508 2.48813 2.63645 3.37423 3.59952 3.69604 3.78203 3.91996 4.02602 4.10482 4.20206 4.31434 4.35753 4.37129 4.52549 4.67470 4.70020 4.80507 4.93098 5.01566 5.23756 5.26728 5.43156 5.52457 5.74752 6.21646 6.33212 6.62791 7.10963 7.77596 8.43534 9.28905 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.015939 B = 0.004467 C = 0.003615 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.271960 B = 6266.640951 C = 7742.825962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.351 6.351 3 C 0.538 3.462 4 O -0.510 6.510 5 C -0.336 4.336 6 S 0.414 5.586 7 C -0.203 4.203 8 C -0.120 4.120 9 Cl -0.034 7.034 10 C 0.169 3.831 11 O -0.309 6.309 12 C 0.095 3.905 13 H 0.059 0.941 14 C -0.105 4.105 15 C 0.129 3.871 16 N -0.626 5.626 17 C -0.250 4.250 18 H 0.082 0.918 19 C -0.057 4.057 20 N -0.932 5.932 21 Si 0.974 3.026 22 H -0.286 1.286 23 H -0.271 1.271 24 H -0.295 1.295 25 C 0.177 3.823 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.140 0.860 29 H 0.219 0.781 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.028 0.972 34 H 0.245 0.755 35 H 0.030 0.970 36 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.469 -20.396 6.150 22.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.268 6.268 3 C 0.384 3.616 4 O -0.400 6.400 5 C -0.455 4.455 6 S 0.682 5.318 7 C -0.342 4.342 8 C -0.159 4.159 9 Cl -0.006 7.006 10 C 0.108 3.892 11 O -0.225 6.225 12 C 0.038 3.962 13 H 0.077 0.923 14 C -0.143 4.143 15 C 0.004 3.996 16 N -0.354 5.354 17 C -0.379 4.379 18 H 0.100 0.900 19 C -0.252 4.252 20 N -0.579 5.579 21 Si 0.803 3.197 22 H -0.213 1.213 23 H -0.196 1.196 24 H -0.222 1.222 25 C 0.052 3.948 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.236 0.764 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.046 0.954 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.648 -21.416 6.200 23.265 hybrid contribution 0.999 2.856 -0.300 3.041 sum -5.649 -18.560 5.899 20.278 Atomic orbital electron populations 1.23219 0.74703 1.05992 1.02447 1.86143 1.25295 1.30806 1.84589 1.18215 0.87197 0.82407 0.73769 1.90950 1.66548 1.36394 1.46133 1.22891 0.96732 1.00537 1.25301 1.82637 0.86983 1.00461 1.61766 1.25748 1.09378 0.95528 1.03535 1.19968 0.90548 0.92065 1.13356 1.98458 1.56702 1.48378 1.97020 1.17981 0.89379 0.85713 0.96114 1.85943 1.79513 1.26434 1.30593 1.23525 0.96429 0.93445 0.82780 0.92287 1.22685 0.96499 0.95819 0.99303 1.21759 0.84972 0.97270 0.95570 1.44690 1.01319 1.17323 1.72088 1.19394 0.90239 0.92056 1.36185 0.90011 1.25615 0.97213 1.00178 1.02170 1.70174 1.06017 1.26024 1.55685 0.85134 0.77717 0.79497 0.77368 1.21253 1.19635 1.22192 1.21334 0.91404 0.86185 0.95884 0.92257 0.92337 0.84182 0.76388 0.91206 0.88982 0.92585 0.95405 0.94547 0.95185 0.96127 Number of geometries 1 Number of calculations of the screened coulomb radii 3 The total number of SCF iterations 230. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.45 113.37 1.18 1.64 16 2 O -0.35 -7.62 10.23 -58.95 -0.60 -8.22 16 3 C 0.54 15.67 7.72 68.62 0.53 16.20 16 4 O -0.51 -17.96 15.14 24.99 0.38 -17.58 16 5 C -0.34 -9.55 6.28 22.87 0.14 -9.40 16 6 S 0.41 7.02 22.82 -56.49 -1.29 5.74 16 7 C -0.20 -4.22 10.75 66.78 0.72 -3.50 16 8 C -0.12 -3.79 6.26 21.19 0.13 -3.66 16 9 Cl -0.03 -1.29 27.60 -2.72 -0.08 -1.37 16 10 C 0.17 5.96 5.69 22.02 0.13 6.08 16 11 O -0.31 -13.06 8.65 -74.30 -0.64 -13.70 16 12 C 0.09 4.16 2.93 31.79 0.09 4.26 16 13 H 0.06 2.54 7.92 -2.39 -0.02 2.53 16 14 C -0.10 -4.26 6.81 31.99 0.22 -4.04 16 15 C 0.13 5.74 7.23 86.85 0.63 6.37 16 16 N -0.63 -34.27 3.39 -691.96 -2.35 -36.62 16 17 C -0.25 -14.53 10.26 84.04 0.86 -13.67 16 18 H 0.08 4.54 7.84 -2.91 -0.02 4.52 16 19 C -0.06 -3.33 5.45 84.87 0.46 -2.87 16 20 N -0.93 -56.17 10.49 21.65 0.23 -55.94 16 21 Si 0.97 46.82 29.56 68.60 2.03 48.85 16 22 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 23 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 25 C 0.18 9.36 4.68 86.73 0.41 9.77 16 26 H 0.06 0.96 8.13 -2.39 -0.02 0.94 16 27 H 0.06 0.97 8.13 -2.39 -0.02 0.95 16 28 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.22 2.95 8.06 -2.91 -0.02 2.93 16 30 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 31 H 0.09 3.32 8.14 -2.39 -0.02 3.31 16 32 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 35 H 0.03 1.77 6.96 -2.39 -0.02 1.75 16 36 H 0.02 1.20 7.07 -2.39 -0.02 1.18 16 Total: -1.00 -74.88 336.82 4.29 -70.59 By element: Atomic # 1 Polarization: -0.02 SS G_CDS: 1.12 Total: 1.09 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 5.50 Total: 7.18 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -2.12 Total: -92.56 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.87 Total: -39.51 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Atomic # 16 Polarization: 7.02 SS G_CDS: -1.29 Total: 5.74 kcal Atomic # 17 Polarization: -1.29 SS G_CDS: -0.08 Total: -1.37 kcal Total: -74.88 4.29 -70.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228779086.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.230 kcal (2) G-P(sol) polarization free energy of solvation -74.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.38 seconds