Wall clock time and date at job start Tue Mar 31 2020 16:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42107 * 110.54199 * 2 1 4 4 O 1.42100 * 110.54561 * 223.25067 * 2 1 3 5 5 C 1.76204 * 104.45004 * 111.62381 * 2 1 3 6 6 C 1.35166 * 125.60614 * 90.00199 * 5 2 1 7 7 C 1.40313 * 107.12115 * 180.02562 * 6 5 2 8 8 C 1.36633 * 106.70585 * 359.97438 * 7 6 5 9 9 C 1.46472 * 125.99579 * 179.97438 * 8 7 6 10 10 O 1.21621 * 120.00389 * 0.02562 * 9 8 7 11 11 O 1.34899 * 119.99841 * 180.02562 * 9 8 7 12 12 C 1.45206 * 116.99849 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47021 * 179.97438 * 12 11 9 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47324 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46692 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46740 * 119.99592 * 21 19 17 24 24 H 1.48497 * 109.47025 * 239.99950 * 21 19 17 25 25 O 1.33919 * 125.60634 * 270.32891 * 5 2 1 26 26 H 1.08999 * 109.47567 * 308.37417 * 1 2 3 27 27 H 1.09000 * 109.47130 * 68.37750 * 1 2 3 28 28 H 1.08997 * 109.47290 * 188.37531 * 1 2 3 29 29 H 1.07996 * 126.44234 * 0.05521 * 6 5 2 30 30 H 1.08006 * 126.64186 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47070 * 299.99968 * 12 11 9 32 32 H 1.09001 * 109.46626 * 59.99986 * 12 11 9 33 33 H 0.96996 * 119.99844 * 359.97438 * 15 13 12 34 34 H 1.09004 * 109.46923 * 300.00119 * 16 15 13 35 35 H 1.09004 * 109.47042 * 59.99705 * 16 15 13 36 36 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4501 -1.9312 1.8897 7 6 2.7815 -1.9926 3.2517 8 6 2.7711 -0.7079 3.7167 9 6 3.0591 -0.2870 5.0898 10 8 3.3394 -1.1164 5.9340 11 8 3.0133 1.0206 5.4181 12 6 3.3094 1.3647 6.7973 13 6 3.2108 2.8580 6.9748 14 8 2.9201 3.5628 6.0316 15 7 3.4466 3.4103 8.1813 16 6 3.3502 4.8619 8.3540 17 6 3.6576 5.2191 9.7854 18 1 3.9001 4.4425 10.4956 19 6 3.6283 6.5373 10.1886 20 7 3.3325 7.4829 9.3238 21 14 4.0086 6.9800 11.9631 22 1 4.3078 5.7431 12.7285 23 1 5.1845 7.8859 12.0060 24 1 2.8354 7.6626 12.5653 25 8 2.4422 0.1046 2.6908 26 1 -0.3634 0.6379 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.3678 -2.7674 1.2112 30 1 3.0029 -2.8829 3.8217 31 1 2.5944 0.8722 7.4563 32 1 4.3185 1.0356 7.0453 33 1 3.6795 2.8466 8.9356 34 1 4.0649 5.3545 7.6946 35 1 2.3410 5.1910 8.1064 36 1 3.3121 8.4104 9.6073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251836657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:38 Heat of formation + Delta-G solvation = -159.364585 kcal Electronic energy + Delta-G solvation = -24781.595615 eV Core-core repulsion = 20554.339282 eV Total energy + Delta-G solvation = -4227.256333 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.33022 -40.64767 -38.79466 -37.70555 -36.72441 -36.54342 -34.30242 -33.83964 -32.45292 -31.29496 -30.11112 -29.25870 -26.86485 -24.85403 -22.85945 -22.53431 -21.24132 -20.03887 -19.91424 -19.04038 -18.14362 -17.65035 -17.51967 -16.81074 -16.72959 -16.27124 -16.14694 -15.63436 -15.17744 -14.68184 -14.60578 -14.38554 -14.03897 -13.81701 -13.76999 -13.66404 -13.21516 -13.16179 -12.72811 -12.67045 -12.57397 -12.11337 -12.03667 -11.85211 -11.59912 -11.33228 -11.01184 -11.00878 -10.89841 -10.80071 -10.37134 -9.77565 -9.45075 -9.25965 -8.81652 -8.03500 -6.21771 -4.29424 -0.69655 0.00297 1.30611 1.66125 2.04436 2.34515 2.56904 3.09954 3.20932 3.24227 3.28073 3.30973 3.63396 3.83927 4.10746 4.20865 4.27936 4.35910 4.43024 4.68655 4.78612 4.93733 5.05072 5.08167 5.09441 5.14840 5.24258 5.49096 5.85960 5.98257 7.13408 7.20888 7.28350 7.42840 7.57942 7.89194 8.44480 8.67348 8.91236 9.37040 10.88383 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.002095 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.028634 B =13363.606655 C =14383.225693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.525 3.475 3 O -0.908 6.908 4 O -0.914 6.914 5 C -0.533 4.533 6 C -0.105 4.105 7 C -0.132 4.132 8 C -0.002 4.002 9 C 0.548 3.452 10 O -0.476 6.476 11 O -0.312 6.312 12 C 0.048 3.952 13 C 0.498 3.502 14 O -0.529 6.529 15 N -0.705 5.705 16 C 0.250 3.750 17 C -0.545 4.545 18 H 0.065 0.935 19 C 0.064 3.936 20 N -0.884 5.884 21 Si 0.906 3.094 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 O -0.086 6.086 26 H 0.140 0.860 27 H 0.142 0.858 28 H 0.136 0.864 29 H 0.180 0.820 30 H 0.178 0.822 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.393 0.607 34 H 0.031 0.969 35 H 0.030 0.970 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 -22.235 -16.498 28.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.696 3.304 3 O -0.905 6.905 4 O -0.911 6.911 5 C -0.663 4.663 6 C -0.125 4.125 7 C -0.152 4.152 8 C -0.057 4.057 9 C 0.391 3.609 10 O -0.365 6.365 11 O -0.226 6.226 12 C -0.030 4.030 13 C 0.281 3.719 14 O -0.406 6.406 15 N -0.355 5.355 16 C 0.130 3.870 17 C -0.584 4.584 18 H 0.083 0.917 19 C -0.140 4.140 20 N -0.521 5.521 21 Si 0.733 3.267 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.208 1.208 25 O 0.022 5.978 26 H 0.159 0.841 27 H 0.160 0.840 28 H 0.154 0.846 29 H 0.198 0.802 30 H 0.195 0.805 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.226 0.774 34 H 0.049 0.951 35 H 0.048 0.952 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.775 -21.121 -17.446 27.997 hybrid contribution -0.054 -0.559 2.217 2.287 sum -5.829 -21.680 -15.229 27.128 Atomic orbital electron populations 1.30173 1.23556 1.12651 1.12926 1.05340 0.78600 0.74712 0.71722 1.93673 1.77310 1.35252 1.84284 1.93657 1.78186 1.62554 1.56715 1.36055 1.19480 1.00788 1.10006 1.21967 0.98235 0.96081 0.96187 1.22187 1.01536 0.96634 0.94856 1.21466 1.07005 0.89867 0.87328 1.19157 0.74671 0.81849 0.85268 1.90979 1.44153 1.53470 1.47896 1.86743 1.79821 1.24479 1.31580 1.23064 1.03952 0.96457 0.79485 1.19798 0.79602 0.87896 0.84614 1.90745 1.47360 1.62754 1.39757 1.46359 1.68422 1.11711 1.09032 1.19207 0.98037 0.72596 0.97117 1.21230 1.49753 0.93086 0.94288 0.91696 1.24960 0.94722 0.96075 0.98276 1.69980 1.47021 1.00672 1.34434 0.86328 0.78078 0.78572 0.83730 1.19616 1.20745 1.20766 1.84383 1.64237 1.34549 1.14606 0.84122 0.84003 0.84557 0.80214 0.80477 0.87869 0.87857 0.77373 0.95145 0.95181 0.92382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 -1.47 10.80 101.05 1.09 -0.38 16 2 S 2.52 17.18 5.95 -107.50 -0.64 16.55 16 3 O -0.91 -10.64 17.95 -58.41 -1.05 -11.69 16 4 O -0.91 -7.85 17.70 -57.54 -1.02 -8.87 16 5 C -0.53 -4.77 6.97 29.64 0.21 -4.57 16 6 C -0.10 -0.76 10.51 -39.89 -0.42 -1.18 16 7 C -0.13 -1.16 10.62 -39.38 -0.42 -1.57 16 8 C 0.00 -0.02 7.18 -36.85 -0.26 -0.29 16 9 C 0.55 7.49 7.93 34.05 0.27 7.76 16 10 O -0.48 -6.63 16.66 -19.36 -0.32 -6.95 16 11 O -0.31 -4.99 9.77 -48.36 -0.47 -5.47 16 12 C 0.05 0.69 5.96 36.01 0.21 0.91 16 13 C 0.50 9.83 7.91 -10.99 -0.09 9.75 16 14 O -0.53 -12.98 16.50 -14.11 -0.23 -13.21 16 15 N -0.70 -14.26 5.55 -61.47 -0.34 -14.61 16 16 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16 17 C -0.55 -14.45 9.28 -34.44 -0.32 -14.77 16 18 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.88 -25.72 13.29 55.43 0.74 -24.98 16 21 Si 0.91 20.54 29.54 -169.99 -5.02 15.52 16 22 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 O -0.09 -1.07 10.67 3.70 0.04 -1.03 16 26 H 0.14 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.14 0.08 8.14 -51.92 -0.42 -0.35 16 28 H 0.14 0.01 8.14 -51.93 -0.42 -0.41 16 29 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.18 1.13 8.06 -52.48 -0.42 0.71 16 31 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.39 6.57 8.32 -40.82 -0.34 6.24 16 34 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.03 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 350.25 15.07 5.28 5.28 Total: -1.00 -39.66 350.25 -6.57 -46.24 By element: Atomic # 1 Polarization: 3.15 SS G_CDS: -3.68 Total: -0.52 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 0.15 Total: 3.75 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.40 Total: -39.59 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -3.05 Total: -47.22 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 17.18 SS G_CDS: -0.64 Total: 16.55 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -39.66 -6.57 -46.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251836657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.128 kcal (2) G-P(sol) polarization free energy of solvation -39.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds