Wall clock time and date at job start Tue Mar 31 2020 16:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 O 1.42107 * 110.54199 * 2 1 4 4 O 1.42100 * 110.54561 * 223.25067 * 2 1 3 5 5 C 1.76204 * 104.45004 * 111.62381 * 2 1 3 6 6 C 1.35166 * 125.60614 * 90.00199 * 5 2 1 7 7 C 1.40313 * 107.12115 * 180.02562 * 6 5 2 8 8 C 1.36633 * 106.70585 * 359.97438 * 7 6 5 9 9 C 1.46472 * 125.99579 * 179.97438 * 8 7 6 10 10 O 1.21621 * 120.00389 * 0.02562 * 9 8 7 11 11 O 1.34899 * 119.99841 * 180.02562 * 9 8 7 12 12 C 1.45206 * 116.99849 * 179.97438 * 11 9 8 13 13 C 1.50699 * 109.47021 * 179.97438 * 12 11 9 14 14 O 1.21282 * 120.00041 * 359.97438 * 13 12 11 15 15 N 1.34779 * 120.00037 * 180.02562 * 13 12 11 16 16 C 1.46500 * 120.00169 * 180.02562 * 15 13 12 17 17 C 1.50696 * 109.47324 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99822 * 359.97438 * 17 16 15 19 19 C 1.37876 * 120.00339 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.46692 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.46740 * 119.99592 * 21 19 17 24 24 H 1.48497 * 109.47025 * 239.99950 * 21 19 17 25 25 O 1.33919 * 125.60634 * 270.32891 * 5 2 1 26 26 H 1.08999 * 109.47567 * 308.37417 * 1 2 3 27 27 H 1.09000 * 109.47130 * 68.37750 * 1 2 3 28 28 H 1.08997 * 109.47290 * 188.37531 * 1 2 3 29 29 H 1.07996 * 126.44234 * 0.05521 * 6 5 2 30 30 H 1.08006 * 126.64186 * 180.02562 * 7 6 5 31 31 H 1.09000 * 109.47070 * 299.99968 * 12 11 9 32 32 H 1.09001 * 109.46626 * 59.99986 * 12 11 9 33 33 H 0.96996 * 119.99844 * 359.97438 * 15 13 12 34 34 H 1.09004 * 109.46923 * 300.00119 * 16 15 13 35 35 H 1.09004 * 109.47042 * 59.99705 * 16 15 13 36 36 H 0.97000 * 120.00540 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9692 -0.9117 5 6 2.2537 -0.6288 1.5862 6 6 2.4501 -1.9312 1.8897 7 6 2.7815 -1.9926 3.2517 8 6 2.7711 -0.7079 3.7167 9 6 3.0591 -0.2870 5.0898 10 8 3.3394 -1.1164 5.9340 11 8 3.0133 1.0206 5.4181 12 6 3.3094 1.3647 6.7973 13 6 3.2108 2.8580 6.9748 14 8 2.9201 3.5628 6.0316 15 7 3.4466 3.4103 8.1813 16 6 3.3502 4.8619 8.3540 17 6 3.6576 5.2191 9.7854 18 1 3.9001 4.4425 10.4956 19 6 3.6283 6.5373 10.1886 20 7 3.3325 7.4829 9.3238 21 14 4.0086 6.9800 11.9631 22 1 4.3078 5.7431 12.7285 23 1 5.1845 7.8859 12.0060 24 1 2.8354 7.6626 12.5653 25 8 2.4422 0.1046 2.6908 26 1 -0.3634 0.6379 0.8056 27 1 -0.3633 0.3787 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.3678 -2.7674 1.2112 30 1 3.0029 -2.8829 3.8217 31 1 2.5944 0.8722 7.4563 32 1 4.3185 1.0356 7.0453 33 1 3.6795 2.8466 8.9356 34 1 4.0649 5.3545 7.6946 35 1 2.3410 5.1910 8.1064 36 1 3.3121 8.4104 9.6073 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251836657.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:37 Heat of formation + Delta-G solvation = -192.228347 kcal Electronic energy + Delta-G solvation = -24783.020695 eV Core-core repulsion = 20554.339282 eV Total energy + Delta-G solvation = -4228.681413 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.08264 -41.77414 -40.41798 -38.35235 -37.87846 -37.20699 -36.22577 -34.55856 -34.44531 -32.11986 -30.77745 -30.33218 -28.61608 -25.86002 -24.52864 -23.45358 -22.16481 -21.71961 -20.57909 -19.89923 -19.21178 -18.91984 -18.39907 -18.14869 -17.68417 -17.36387 -16.98547 -16.90870 -16.85025 -16.17162 -16.10779 -15.21406 -14.92336 -14.59287 -14.58776 -14.32850 -14.18639 -14.03146 -13.97593 -13.94004 -13.75476 -13.35063 -13.24367 -12.92712 -12.83093 -12.76812 -12.36943 -12.23134 -12.11370 -12.06220 -11.48148 -11.46720 -10.98787 -10.84548 -10.51573 -9.96815 -8.30613 -6.47404 -1.18530 -0.80336 0.61063 0.75865 1.34325 1.44050 1.44274 1.44952 1.50730 1.58418 1.79098 2.31585 2.50200 2.77358 3.04833 3.13490 3.40963 3.50297 3.64801 3.93506 3.98052 3.98476 4.08896 4.09626 4.23324 4.50584 4.78382 4.89448 4.95661 5.06842 5.19738 5.27596 5.39222 5.60707 5.80550 6.15660 6.61423 6.73745 7.18678 7.33217 8.81837 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.022502 B = 0.002095 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.028634 B =13363.606655 C =14383.225693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.611 4.611 2 S 2.526 3.474 3 O -0.970 6.970 4 O -0.936 6.936 5 C -0.537 4.537 6 C -0.096 4.096 7 C -0.108 4.108 8 C -0.047 4.047 9 C 0.552 3.448 10 O -0.483 6.483 11 O -0.342 6.342 12 C 0.059 3.941 13 C 0.497 3.503 14 O -0.585 6.585 15 N -0.696 5.696 16 C 0.265 3.735 17 C -0.555 4.555 18 H 0.088 0.912 19 C 0.003 3.997 20 N -0.931 5.931 21 Si 0.986 3.014 22 H -0.252 1.252 23 H -0.280 1.280 24 H -0.279 1.279 25 O -0.120 6.120 26 H 0.148 0.852 27 H 0.169 0.831 28 H 0.171 0.829 29 H 0.220 0.780 30 H 0.204 0.796 31 H 0.138 0.862 32 H 0.134 0.866 33 H 0.414 0.586 34 H -0.009 1.009 35 H -0.007 1.007 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.970 -25.389 -15.669 30.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.766 4.766 2 S 2.701 3.299 3 O -0.967 6.967 4 O -0.933 6.933 5 C -0.666 4.666 6 C -0.116 4.116 7 C -0.128 4.128 8 C -0.100 4.100 9 C 0.396 3.604 10 O -0.372 6.372 11 O -0.257 6.257 12 C -0.017 4.017 13 C 0.283 3.717 14 O -0.465 6.465 15 N -0.347 5.347 16 C 0.143 3.857 17 C -0.593 4.593 18 H 0.106 0.894 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.810 3.190 22 H -0.175 1.175 23 H -0.206 1.206 24 H -0.205 1.205 25 O -0.014 6.014 26 H 0.166 0.834 27 H 0.186 0.814 28 H 0.189 0.811 29 H 0.236 0.764 30 H 0.221 0.779 31 H 0.156 0.844 32 H 0.152 0.848 33 H 0.251 0.749 34 H 0.009 0.991 35 H 0.011 0.989 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.489 -24.353 -16.580 30.167 hybrid contribution 0.087 0.340 1.789 1.823 sum -6.401 -24.013 -14.791 28.920 Atomic orbital electron populations 1.29998 1.16428 1.15362 1.14799 1.05306 0.81064 0.72919 0.70630 1.93603 1.80274 1.38001 1.84870 1.93616 1.80369 1.62367 1.56959 1.36529 1.18913 1.01561 1.09565 1.22481 0.96655 0.96382 0.96034 1.22626 0.98699 0.96002 0.95453 1.21527 1.10532 0.91046 0.86930 1.19315 0.74205 0.80759 0.86072 1.90954 1.44818 1.53115 1.48311 1.86721 1.80519 1.26340 1.32102 1.22970 1.06802 0.91877 0.80048 1.20679 0.77519 0.90251 0.83262 1.90719 1.49554 1.64806 1.41467 1.46009 1.68513 1.09773 1.10433 1.18653 0.94720 0.75672 0.96672 1.21634 1.49216 0.93924 0.94494 0.89403 1.26079 0.94244 0.96008 1.03361 1.70143 1.48385 1.01252 1.37173 0.85084 0.77654 0.78798 0.77507 1.17493 1.20600 1.20502 1.84347 1.65485 1.35936 1.15652 0.83396 0.81358 0.81125 0.76351 0.77936 0.84443 0.84795 0.74898 0.99081 0.98915 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.61 -0.82 10.80 113.37 1.22 0.41 16 2 S 2.53 33.03 5.95 -56.49 -0.34 32.70 16 3 O -0.97 -24.26 17.95 -126.82 -2.28 -26.54 16 4 O -0.94 -15.16 17.70 -127.65 -2.26 -17.42 16 5 C -0.54 -9.24 6.97 67.11 0.47 -8.77 16 6 C -0.10 -1.16 10.51 22.07 0.23 -0.93 16 7 C -0.11 -1.66 10.62 22.40 0.24 -1.42 16 8 C -0.05 -1.12 7.18 24.04 0.17 -0.94 16 9 C 0.55 14.91 7.93 69.97 0.55 15.47 16 10 O -0.48 -12.72 16.66 19.44 0.32 -12.40 16 11 O -0.34 -11.07 9.77 -51.13 -0.50 -11.57 16 12 C 0.06 1.66 5.96 71.24 0.42 2.09 16 13 C 0.50 20.06 7.91 87.66 0.69 20.76 16 14 O -0.58 -30.31 16.50 15.76 0.26 -30.05 16 15 N -0.70 -28.49 5.55 -466.78 -2.59 -31.08 16 16 C 0.27 14.35 5.43 85.63 0.46 14.82 16 17 C -0.55 -29.56 9.28 25.60 0.24 -29.32 16 18 H 0.09 4.18 7.60 -2.91 -0.02 4.15 16 19 C 0.00 0.15 5.46 84.65 0.46 0.61 16 20 N -0.93 -55.85 13.29 21.45 0.28 -55.57 16 21 Si 0.99 41.81 29.54 68.60 2.03 43.83 16 22 H -0.25 -9.77 7.11 99.48 0.71 -9.07 16 23 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 24 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 25 O -0.12 -3.10 10.67 -3.98 -0.04 -3.14 16 26 H 0.15 0.20 8.14 -2.39 -0.02 0.18 16 27 H 0.17 -0.48 8.14 -2.39 -0.02 -0.50 16 28 H 0.17 -0.81 8.14 -2.39 -0.02 -0.83 16 29 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 30 H 0.20 1.92 8.06 -2.91 -0.02 1.90 16 31 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.41 13.34 8.32 -92.71 -0.77 12.56 16 34 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 35 H -0.01 -0.43 8.14 -2.38 -0.02 -0.45 16 36 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -92.64 350.25 0.44 -92.21 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: 0.37 Total: 6.26 kcal Atomic # 6 Polarization: 7.59 SS G_CDS: 5.17 Total: 12.76 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.30 Total: -86.65 kcal Atomic # 8 Polarization: -96.62 SS G_CDS: -4.49 Total: -101.11 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Atomic # 16 Polarization: 33.03 SS G_CDS: -0.34 Total: 32.70 kcal Total: -92.64 0.44 -92.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251836657.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.023 kcal (2) G-P(sol) polarization free energy of solvation -92.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds