Wall clock time and date at job start Tue Mar 31 2020 17:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00203 * 2 1 4 4 H 1.08003 * 120.00666 * 202.34867 * 3 2 1 5 5 C 1.38822 * 119.99536 * 22.34086 * 3 2 1 6 6 N 1.31617 * 120.00008 * 11.36085 * 5 3 2 7 7 Si 1.86799 * 119.99795 * 191.35544 * 5 3 2 8 8 H 1.48504 * 109.47173 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47367 * 120.00451 * 7 5 3 10 10 H 1.48502 * 109.47156 * 240.00698 * 7 5 3 11 11 C 1.46503 * 120.00339 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46956 * 270.00190 * 11 2 1 13 13 C 1.52998 * 109.47362 * 179.97438 * 12 11 2 14 14 N 1.46495 * 109.47364 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00369 * 180.02562 * 14 13 12 16 16 O 1.21527 * 119.99431 * 359.97438 * 15 14 13 17 17 C 1.47996 * 120.00106 * 179.97438 * 15 14 13 18 18 C 1.39971 * 120.94284 * 269.99376 * 17 15 14 19 19 Cl 1.73609 * 120.50834 * 0.25546 * 18 17 15 20 20 C 1.38292 * 118.98276 * 179.97438 * 18 17 15 21 21 N 1.31792 * 120.90904 * 0.02562 * 20 18 17 22 22 C 1.31787 * 122.10293 * 359.97438 * 21 20 18 23 23 C 1.38294 * 120.91054 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 120.51204 * 179.97438 * 23 22 21 25 25 H 1.08992 * 109.47293 * 274.20438 * 1 2 3 26 26 H 1.08995 * 109.47166 * 34.20943 * 1 2 3 27 27 H 1.09007 * 109.46902 * 154.20763 * 1 2 3 28 28 H 0.97000 * 119.99891 * 180.02562 * 6 5 3 29 29 H 1.08995 * 109.47355 * 150.00039 * 11 2 1 30 30 H 1.09001 * 109.46967 * 29.99373 * 11 2 1 31 31 H 1.09002 * 109.47634 * 59.99249 * 12 11 2 32 32 H 1.09010 * 109.47005 * 299.99850 * 12 11 2 33 33 H 1.08995 * 109.47003 * 59.99816 * 13 12 11 34 34 H 1.08993 * 109.47093 * 299.99701 * 13 12 11 35 35 H 0.97003 * 120.00071 * 359.97438 * 14 13 12 36 36 H 1.07992 * 119.54311 * 180.02562 * 20 18 17 37 37 H 1.07994 * 119.54862 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2690 1.0937 7 14 2.3364 4.0048 0.1684 8 1 3.6136 3.8168 -0.5657 9 1 1.4265 4.8615 -0.6335 10 1 2.6073 4.6572 1.4747 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4412 14 7 3.4617 -3.4594 2.8222 15 6 4.1244 -4.6070 3.0681 16 8 4.5185 -5.2909 2.1441 17 6 4.3720 -5.0342 4.4633 18 6 5.5322 -4.6418 5.1410 19 17 6.7110 -3.6346 4.3600 20 6 5.7222 -5.0639 6.4441 21 7 4.8301 -5.8246 7.0462 22 6 3.7246 -6.2169 6.4457 23 6 3.4526 -5.8421 5.1426 24 17 1.9934 -6.3655 4.3613 25 1 -0.3633 0.0753 1.0248 26 1 -0.3633 0.8498 -0.5777 27 1 -0.3633 -0.9254 -0.4472 28 1 -0.0465 3.0776 1.4127 29 1 3.1499 -1.1381 -0.5143 30 1 1.6085 -2.0282 -0.5146 31 1 1.5001 -1.8415 1.9556 32 1 3.0416 -0.9515 1.9559 33 1 4.1694 -2.9061 0.9274 34 1 2.6277 -3.7955 0.9273 35 1 3.1474 -2.9134 3.5598 36 1 6.6139 -4.7662 6.9756 37 1 3.0218 -6.8404 6.9781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265917392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:55 Heat of formation + Delta-G solvation = 8.591932 kcal Electronic energy + Delta-G solvation = -22888.483366 eV Core-core repulsion = 19139.468383 eV Total energy + Delta-G solvation = -3749.014982 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.13157 -39.40302 -37.33343 -37.06168 -36.31313 -34.85890 -33.26450 -31.91181 -31.58513 -29.97896 -26.36481 -25.82569 -24.60326 -24.21312 -22.05882 -21.15104 -20.28604 -18.46805 -17.77580 -17.18568 -16.80406 -16.35227 -15.74030 -15.31668 -15.12001 -15.03215 -14.72958 -14.06222 -13.92978 -13.37029 -13.13757 -12.90864 -12.89213 -12.68236 -12.35046 -12.06083 -11.69447 -11.49196 -11.38568 -11.13141 -10.89953 -10.79481 -10.68824 -10.50154 -10.25195 -10.09498 -10.00088 -9.90070 -9.79216 -9.47977 -9.12855 -8.57908 -6.79701 -5.75253 -3.21016 0.11559 0.12343 1.20131 1.58196 2.20775 2.75922 2.90431 3.35480 3.43106 3.44906 3.73754 4.02626 4.08787 4.24868 4.46623 4.47753 4.87405 5.08805 5.20594 5.42544 5.45324 5.58802 5.77349 5.87912 6.07011 6.10213 6.39394 6.44769 6.73671 6.78164 6.96220 7.03822 7.28506 7.37489 7.70852 7.79219 7.90747 8.37589 9.21658 9.84870 10.33488 11.29823 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.002845 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.754778 B = 9840.924271 C =10657.481623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.602 5.602 3 C -0.254 4.254 4 H 0.069 0.931 5 C 0.001 3.999 6 N -0.908 5.908 7 Si 0.904 3.096 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.157 3.843 12 C -0.151 4.151 13 C 0.120 3.880 14 N -0.705 5.705 15 C 0.560 3.440 16 O -0.513 6.513 17 C -0.062 4.062 18 C -0.055 4.055 19 Cl -0.020 7.020 20 C 0.120 3.880 21 N -0.444 5.444 22 C 0.120 3.880 23 C -0.055 4.055 24 Cl -0.022 7.022 25 H 0.027 0.973 26 H 0.045 0.955 27 H -0.003 1.003 28 H 0.251 0.749 29 H 0.046 0.954 30 H 0.039 0.961 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.403 0.597 36 H 0.180 0.820 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.466 -17.358 11.879 22.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.087 0.913 5 C -0.197 4.197 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.217 1.217 11 C 0.029 3.971 12 C -0.192 4.192 13 C -0.003 4.003 14 N -0.356 5.356 15 C 0.342 3.658 16 O -0.388 6.388 17 C -0.075 4.075 18 C -0.085 4.085 19 Cl 0.009 6.991 20 C -0.037 4.037 21 N -0.153 5.153 22 C -0.038 4.038 23 C -0.085 4.085 24 Cl 0.007 6.993 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.015 0.985 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.058 0.942 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.238 0.762 36 H 0.197 0.803 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 7.740 -17.893 11.912 22.847 hybrid contribution 0.016 1.552 -0.522 1.638 sum 7.756 -16.341 11.390 21.375 Atomic orbital electron populations 1.20803 0.82481 0.95619 0.99233 1.43987 1.01972 1.00688 1.85806 1.19280 0.97986 0.85423 1.35658 0.91294 1.25030 0.97685 0.98536 0.98468 1.70075 1.17858 1.26936 1.40516 0.86192 0.78695 0.84290 0.77429 1.20308 1.21620 1.21740 1.20709 0.96033 0.88285 0.92104 1.22588 0.99647 0.93726 1.03190 1.21642 1.00717 0.97464 0.80488 1.46111 1.56230 1.22468 1.10744 1.17736 0.79206 0.82144 0.86732 1.90846 1.50479 1.53755 1.43753 1.20384 0.93568 0.97726 0.95819 1.22183 0.92522 0.98830 0.94954 1.98455 1.54996 1.65667 1.80012 1.22965 0.98603 0.92582 0.89590 1.67860 1.01681 1.09808 1.35950 1.22960 0.94517 0.96672 0.89619 1.22174 0.91258 1.00124 0.94937 1.98448 1.32230 1.88568 1.80014 0.95436 0.93663 0.98492 0.93831 0.93570 0.94228 0.92021 0.91146 0.91270 0.91421 0.76205 0.80311 0.80326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 22. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 9.01 59.85 0.54 4.51 16 2 N -0.60 -14.83 2.93 -181.12 -0.53 -15.36 16 3 C -0.25 -6.85 9.67 -15.06 -0.15 -7.00 16 4 H 0.07 1.83 7.84 -52.48 -0.41 1.42 16 5 C 0.00 0.02 5.13 -17.43 -0.09 -0.07 16 6 N -0.91 -26.05 10.59 55.49 0.59 -25.46 16 7 Si 0.90 21.59 29.57 -169.99 -5.03 16.56 16 8 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 9 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 11 C 0.16 3.07 5.71 -4.04 -0.02 3.04 16 12 C -0.15 -2.55 5.65 -26.73 -0.15 -2.70 16 13 C 0.12 1.72 5.67 -4.05 -0.02 1.70 16 14 N -0.71 -9.20 5.55 -61.21 -0.34 -9.54 16 15 C 0.56 7.70 5.63 -12.26 -0.07 7.63 16 16 O -0.51 -8.72 17.10 5.34 0.09 -8.63 16 17 C -0.06 -0.71 5.67 -104.60 -0.59 -1.31 16 18 C -0.05 -0.55 6.38 -38.91 -0.25 -0.80 16 19 Cl -0.02 -0.21 28.17 -51.86 -1.46 -1.67 16 20 C 0.12 0.98 10.98 -17.55 -0.19 0.79 16 21 N -0.44 -3.88 10.33 -13.25 -0.14 -4.02 16 22 C 0.12 0.97 10.98 -17.55 -0.19 0.78 16 23 C -0.05 -0.54 6.38 -38.91 -0.25 -0.79 16 24 Cl -0.02 -0.22 28.17 -51.86 -1.46 -1.68 16 25 H 0.03 0.71 7.42 -51.93 -0.39 0.33 16 26 H 0.04 1.19 7.19 -51.93 -0.37 0.81 16 27 H 0.00 -0.07 7.84 -51.93 -0.41 -0.48 16 28 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.05 0.88 8.03 -51.93 -0.42 0.47 16 30 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.31 8.14 -51.92 -0.42 0.89 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 4.67 8.46 -40.82 -0.35 4.32 16 36 H 0.18 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 LS Contribution 352.24 15.07 5.31 5.31 Total: -1.00 -31.54 352.24 -8.82 -40.37 By element: Atomic # 1 Polarization: 2.75 SS G_CDS: -4.42 Total: -1.67 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: -1.44 Total: 5.80 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: -0.42 Total: -54.38 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -2.92 Total: -3.35 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.54 -8.82 -40.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265917392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.960 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds