Wall clock time and date at job start Tue Mar 31 2020 17:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00203 * 2 1 4 4 H 1.08003 * 120.00666 * 202.34867 * 3 2 1 5 5 C 1.38822 * 119.99536 * 22.34086 * 3 2 1 6 6 N 1.31617 * 120.00008 * 11.36085 * 5 3 2 7 7 Si 1.86799 * 119.99795 * 191.35544 * 5 3 2 8 8 H 1.48504 * 109.47173 * 0.02562 * 7 5 3 9 9 H 1.48494 * 109.47367 * 120.00451 * 7 5 3 10 10 H 1.48502 * 109.47156 * 240.00698 * 7 5 3 11 11 C 1.46503 * 120.00339 * 180.02562 * 2 1 3 12 12 C 1.52998 * 109.46956 * 270.00190 * 11 2 1 13 13 C 1.52998 * 109.47362 * 179.97438 * 12 11 2 14 14 N 1.46495 * 109.47364 * 179.97438 * 13 12 11 15 15 C 1.34779 * 120.00369 * 180.02562 * 14 13 12 16 16 O 1.21527 * 119.99431 * 359.97438 * 15 14 13 17 17 C 1.47996 * 120.00106 * 179.97438 * 15 14 13 18 18 C 1.39971 * 120.94284 * 269.99376 * 17 15 14 19 19 Cl 1.73609 * 120.50834 * 0.25546 * 18 17 15 20 20 C 1.38292 * 118.98276 * 179.97438 * 18 17 15 21 21 N 1.31792 * 120.90904 * 0.02562 * 20 18 17 22 22 C 1.31787 * 122.10293 * 359.97438 * 21 20 18 23 23 C 1.38294 * 120.91054 * 0.02562 * 22 21 20 24 24 Cl 1.73600 * 120.51204 * 179.97438 * 23 22 21 25 25 H 1.08992 * 109.47293 * 274.20438 * 1 2 3 26 26 H 1.08995 * 109.47166 * 34.20943 * 1 2 3 27 27 H 1.09007 * 109.46902 * 154.20763 * 1 2 3 28 28 H 0.97000 * 119.99891 * 180.02562 * 6 5 3 29 29 H 1.08995 * 109.47355 * 150.00039 * 11 2 1 30 30 H 1.09001 * 109.46967 * 29.99373 * 11 2 1 31 31 H 1.09002 * 109.47634 * 59.99249 * 12 11 2 32 32 H 1.09010 * 109.47005 * 299.99850 * 12 11 2 33 33 H 1.08995 * 109.47003 * 59.99816 * 13 12 11 34 34 H 1.08993 * 109.47093 * 299.99701 * 13 12 11 35 35 H 0.97003 * 120.00071 * 359.97438 * 14 13 12 36 36 H 1.07992 * 119.54311 * 180.02562 * 20 18 17 37 37 H 1.07994 * 119.54862 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1689 1.2211 -0.3556 5 6 1.5337 2.3430 0.4570 6 7 0.3841 2.2690 1.0937 7 14 2.3364 4.0048 0.1684 8 1 3.6136 3.8168 -0.5657 9 1 1.4265 4.8615 -0.6335 10 1 2.6073 4.6572 1.4747 11 6 2.1976 -1.2687 -0.0006 12 6 2.4525 -1.7110 1.4417 13 6 3.2170 -3.0363 1.4412 14 7 3.4617 -3.4594 2.8222 15 6 4.1244 -4.6070 3.0681 16 8 4.5185 -5.2909 2.1441 17 6 4.3720 -5.0342 4.4633 18 6 5.5322 -4.6418 5.1410 19 17 6.7110 -3.6346 4.3600 20 6 5.7222 -5.0639 6.4441 21 7 4.8301 -5.8246 7.0462 22 6 3.7246 -6.2169 6.4457 23 6 3.4526 -5.8421 5.1426 24 17 1.9934 -6.3655 4.3613 25 1 -0.3633 0.0753 1.0248 26 1 -0.3633 0.8498 -0.5777 27 1 -0.3633 -0.9254 -0.4472 28 1 -0.0465 3.0776 1.4127 29 1 3.1499 -1.1381 -0.5143 30 1 1.6085 -2.0282 -0.5146 31 1 1.5001 -1.8415 1.9556 32 1 3.0416 -0.9515 1.9559 33 1 4.1694 -2.9061 0.9274 34 1 2.6277 -3.7955 0.9273 35 1 3.1474 -2.9134 3.5598 36 1 6.6139 -4.7662 6.9756 37 1 3.0218 -6.8404 6.9781 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265917392.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:54 Heat of formation + Delta-G solvation = -11.368438 kcal Electronic energy + Delta-G solvation = -22889.348912 eV Core-core repulsion = 19139.468383 eV Total energy + Delta-G solvation = -3749.880529 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.94475 -40.42697 -38.10224 -37.98771 -37.81712 -36.29915 -34.23048 -33.54868 -32.27603 -31.62153 -27.99085 -27.48250 -25.80918 -24.92025 -23.60011 -22.30956 -21.79633 -19.43664 -18.76916 -18.53375 -17.96515 -17.51105 -16.84623 -16.58741 -16.44833 -15.82374 -15.75902 -15.53090 -15.34581 -14.82260 -14.69771 -14.47520 -13.70849 -13.67198 -13.31972 -13.10922 -13.02274 -12.83962 -12.81673 -12.73848 -12.48231 -12.29501 -12.27333 -12.00410 -11.89767 -11.69612 -11.47062 -11.03499 -10.87220 -10.64490 -10.28861 -10.17872 -8.79642 -7.82336 -5.30003 -0.67126 -0.55729 0.44258 0.82367 1.15018 1.45931 1.48159 1.57727 1.80543 2.15683 2.51546 3.10975 3.20130 3.30951 3.32897 3.46006 3.64619 3.77826 4.08979 4.10898 4.27617 4.46781 4.47757 4.64844 4.77357 4.85434 4.90707 4.97465 5.19529 5.28843 5.34798 5.46165 5.65524 5.74432 6.20526 6.34380 6.36419 6.83753 7.16596 7.88713 8.31678 9.21278 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014924 B = 0.002845 C = 0.002627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.754778 B = 9840.924271 C =10657.481623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.620 5.620 3 C -0.261 4.261 4 H 0.071 0.929 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.965 3.035 8 H -0.267 1.267 9 H -0.293 1.293 10 H -0.292 1.292 11 C 0.151 3.849 12 C -0.130 4.130 13 C 0.133 3.867 14 N -0.701 5.701 15 C 0.564 3.436 16 O -0.549 6.549 17 C -0.079 4.079 18 C -0.063 4.063 19 Cl -0.029 7.029 20 C 0.132 3.868 21 N -0.449 5.449 22 C 0.133 3.867 23 C -0.062 4.062 24 Cl -0.027 7.027 25 H 0.004 0.996 26 H 0.016 0.984 27 H 0.030 0.970 28 H 0.247 0.753 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.411 0.589 36 H 0.209 0.791 37 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.362 -18.341 12.892 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.343 5.343 3 C -0.391 4.391 4 H 0.089 0.911 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.794 3.206 8 H -0.192 1.192 9 H -0.220 1.220 10 H -0.219 1.219 11 C 0.025 3.975 12 C -0.170 4.170 13 C 0.010 3.990 14 N -0.351 5.351 15 C 0.348 3.652 16 O -0.427 6.427 17 C -0.091 4.091 18 C -0.093 4.093 19 Cl 0.000 7.000 20 C -0.025 4.025 21 N -0.158 5.158 22 C -0.025 4.025 23 C -0.092 4.092 24 Cl 0.002 6.998 25 H 0.023 0.977 26 H 0.035 0.965 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.247 0.753 36 H 0.225 0.775 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 8.654 -18.896 12.937 24.481 hybrid contribution -0.248 1.768 -0.821 1.965 sum 8.406 -17.128 12.116 22.602 Atomic orbital electron populations 1.20559 0.82729 0.95988 0.97598 1.44215 1.02212 1.01789 1.86071 1.19585 0.98101 0.86639 1.34753 0.91120 1.25746 0.98432 1.01672 0.98878 1.70231 1.19174 1.27273 1.41813 0.85229 0.78084 0.80279 0.77021 1.19165 1.21964 1.21903 1.20886 0.96076 0.86832 0.93740 1.22216 0.99358 0.94466 1.00995 1.21358 1.00250 0.96046 0.81363 1.46000 1.56051 1.22592 1.10460 1.17984 0.78189 0.81497 0.87490 1.90822 1.51902 1.54751 1.45217 1.20268 0.94920 0.99164 0.94772 1.22276 0.92058 0.99325 0.95594 1.98451 1.55240 1.65976 1.80318 1.23420 0.99116 0.91230 0.88742 1.67992 1.01934 1.09975 1.35882 1.23433 0.94528 0.95738 0.88790 1.22267 0.90980 1.00359 0.95547 1.98447 1.32482 1.88615 1.80268 0.97745 0.96492 0.95168 0.94378 0.93155 0.92121 0.92582 0.92996 0.91422 0.90898 0.75296 0.77482 0.77395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.58 9.01 127.77 1.15 9.73 16 2 N -0.62 -30.30 2.93 -726.94 -2.13 -32.43 16 3 C -0.26 -14.03 9.67 84.04 0.81 -13.22 16 4 H 0.07 3.71 7.84 -2.91 -0.02 3.68 16 5 C -0.05 -2.89 5.13 84.86 0.44 -2.46 16 6 N -0.94 -54.64 10.59 21.65 0.23 -54.41 16 7 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 8 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 9 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 10 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 11 C 0.15 5.73 5.71 86.38 0.49 6.22 16 12 C -0.13 -4.29 5.65 30.59 0.17 -4.12 16 13 C 0.13 3.69 5.67 86.38 0.49 4.18 16 14 N -0.70 -17.72 5.55 -465.86 -2.59 -20.31 16 15 C 0.56 15.14 5.63 86.83 0.49 15.63 16 16 O -0.55 -18.46 17.10 -3.80 -0.07 -18.53 16 17 C -0.08 -1.71 5.67 -19.85 -0.11 -1.82 16 18 C -0.06 -1.16 6.38 22.70 0.14 -1.02 16 19 Cl -0.03 -0.58 28.17 -2.72 -0.08 -0.65 16 20 C 0.13 1.84 10.98 84.71 0.93 2.77 16 21 N -0.45 -6.62 10.33 -195.82 -2.02 -8.64 16 22 C 0.13 1.81 10.98 84.71 0.93 2.74 16 23 C -0.06 -1.12 6.38 22.71 0.14 -0.97 16 24 Cl -0.03 -0.52 28.17 -2.72 -0.08 -0.59 16 25 H 0.00 0.23 7.42 -2.39 -0.02 0.21 16 26 H 0.02 0.88 7.19 -2.39 -0.02 0.86 16 27 H 0.03 1.24 7.84 -2.38 -0.02 1.22 16 28 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 29 H 0.05 1.86 8.03 -2.39 -0.02 1.84 16 30 H 0.06 2.05 7.86 -2.39 -0.02 2.03 16 31 H 0.06 1.92 8.14 -2.39 -0.02 1.91 16 32 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 33 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 34 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.41 9.20 8.46 -92.71 -0.78 8.41 16 36 H 0.21 1.57 8.06 -2.91 -0.02 1.54 16 37 H 0.21 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -67.48 352.24 1.71 -65.76 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: 0.33 Total: 5.54 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.08 Total: 17.67 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -6.51 Total: -115.79 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.07 Total: -18.53 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.15 Total: -1.25 kcal Total: -67.48 1.71 -65.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265917392.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.395 kcal (2) G-P(sol) polarization free energy of solvation -67.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds