Wall clock time and date at job start Tue Mar 31 2020 17:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36942 * 120.00313 * 2 1 4 4 H 1.07997 * 119.99264 * 325.80531 * 3 2 1 5 5 C 1.38804 * 119.99991 * 145.80455 * 3 2 1 6 6 N 1.31625 * 119.99690 * 158.30231 * 5 3 2 7 7 Si 1.86798 * 120.00401 * 338.29713 * 5 3 2 8 8 H 1.48505 * 109.46905 * 90.05319 * 7 5 3 9 9 H 1.48494 * 109.47419 * 210.05262 * 7 5 3 10 10 H 1.48500 * 109.47096 * 330.05534 * 7 5 3 11 11 C 1.46504 * 119.99967 * 179.97438 * 2 1 3 12 12 C 1.52995 * 109.46810 * 90.00120 * 11 2 1 13 13 N 1.46505 * 109.47125 * 180.02562 * 12 11 2 14 14 C 1.46502 * 119.99740 * 269.99982 * 13 12 11 15 15 C 1.34776 * 120.00411 * 89.99439 * 13 12 11 16 16 O 1.21539 * 119.99642 * 1.52161 * 15 13 12 17 17 C 1.48017 * 120.00157 * 181.51214 * 15 13 12 18 18 N 1.32791 * 119.72481 * 354.45090 * 17 15 13 19 19 C 1.31427 * 121.67132 * 180.02562 * 18 17 15 20 20 C 1.38807 * 120.91765 * 359.97438 * 19 18 17 21 21 Cl 1.73593 * 120.32864 * 180.02562 * 20 19 18 22 22 C 1.38661 * 119.34656 * 0.02562 * 20 19 18 23 23 C 1.38743 * 118.46631 * 359.97438 * 22 20 19 24 24 Cl 1.73592 * 120.47944 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47185 * 265.08636 * 1 2 3 26 26 H 1.08997 * 109.47099 * 25.08433 * 1 2 3 27 27 H 1.08999 * 109.47279 * 145.08779 * 1 2 3 28 28 H 0.96999 * 119.99836 * 179.97438 * 6 5 3 29 29 H 1.08999 * 109.47093 * 330.00253 * 11 2 1 30 30 H 1.08992 * 109.47189 * 210.00196 * 11 2 1 31 31 H 1.08999 * 109.47184 * 60.00189 * 12 11 2 32 32 H 1.09001 * 109.47598 * 299.99923 * 12 11 2 33 33 H 1.08992 * 109.47272 * 263.62552 * 14 13 12 34 34 H 1.08998 * 109.47356 * 23.62872 * 14 13 12 35 35 H 1.09003 * 109.46674 * 143.62633 * 14 13 12 36 36 H 1.08001 * 119.54635 * 180.27378 * 19 18 17 37 37 H 1.07996 * 120.76848 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 1.7498 2.0403 -0.5257 5 6 3.3579 1.2897 0.6756 6 7 4.2151 2.2339 0.3497 7 14 3.7671 0.0897 2.0474 8 1 4.4711 -1.0886 1.4805 9 1 4.6425 0.7570 3.0441 10 1 2.5131 -0.3534 2.7079 11 6 2.1975 -1.2688 0.0006 12 6 2.4525 -1.7110 -1.4417 13 7 3.1845 -2.9801 -1.4412 14 6 4.6495 -2.9806 -1.4411 15 6 2.5102 -4.1470 -1.4408 16 8 1.2951 -4.1467 -1.4688 17 6 3.2494 -5.4289 -1.4065 18 7 4.5748 -5.4271 -1.4877 19 6 5.2693 -6.5425 -1.4615 20 6 4.6379 -7.7733 -1.3465 21 17 5.5703 -9.2371 -1.3127 22 6 3.2549 -7.8220 -1.2589 23 6 2.5479 -6.6286 -1.2891 24 17 0.8152 -6.6287 -1.1837 25 1 -0.3633 -0.0880 1.0239 26 1 -0.3633 0.9307 -0.4357 27 1 -0.3634 -0.8427 -0.5881 28 1 5.0592 2.3067 0.8220 29 1 1.6084 -2.0282 0.5147 30 1 3.1499 -1.1382 0.5143 31 1 3.0416 -0.9516 -1.9558 32 1 1.5001 -1.8416 -1.9556 33 1 5.0129 -3.0952 -2.4622 34 1 5.0132 -2.0392 -1.0294 35 1 5.0124 -3.8081 -0.8313 36 1 6.3466 -6.5008 -1.5255 37 1 2.7399 -8.7670 -1.1691 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268252059.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:06 Heat of formation + Delta-G solvation = 35.473165 kcal Electronic energy + Delta-G solvation = -23908.424438 eV Core-core repulsion = 20160.575113 eV Total energy + Delta-G solvation = -3747.849325 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.09649 -40.33343 -38.16996 -37.86225 -37.74562 -36.44389 -33.95192 -33.65988 -32.53178 -30.63258 -28.17953 -27.69345 -26.30598 -25.15682 -24.36316 -22.82846 -21.24371 -18.90334 -18.79838 -18.56678 -17.93039 -17.54579 -16.93768 -16.78959 -16.42579 -15.87937 -15.52053 -15.25756 -14.96198 -14.92307 -14.44481 -14.39862 -14.03669 -13.98682 -13.57892 -13.44593 -13.39497 -13.24281 -13.00494 -12.79548 -12.59881 -12.46883 -12.34339 -12.30765 -11.88352 -11.39781 -11.18551 -10.88691 -10.63260 -10.41734 -10.20342 -9.77075 -8.85486 -8.21494 -5.58173 -0.92160 -0.33278 0.54575 0.96885 1.23130 1.37563 1.43693 1.47986 1.76994 2.36140 2.37482 2.78172 3.04637 3.25066 3.38514 3.45275 3.51020 3.75641 3.98691 4.24566 4.30140 4.40011 4.50802 4.53442 4.69180 4.73373 4.76633 4.85806 4.90287 5.04901 5.08387 5.19989 5.44654 5.89323 6.12063 6.17518 6.32219 6.88937 6.95794 7.57250 7.99659 8.97985 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.016938 B = 0.003574 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.666738 B = 7833.318803 C = 8877.624566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.624 5.624 3 C -0.262 4.262 4 H 0.052 0.948 5 C -0.014 4.014 6 N -0.942 5.942 7 Si 0.938 3.062 8 H -0.262 1.262 9 H -0.305 1.305 10 H -0.277 1.277 11 C 0.126 3.874 12 C 0.112 3.888 13 N -0.592 5.592 14 C 0.075 3.925 15 C 0.549 3.451 16 O -0.540 6.540 17 C 0.077 3.923 18 N -0.430 5.430 19 C 0.117 3.883 20 C -0.051 4.051 21 Cl -0.016 7.016 22 C -0.058 4.058 23 C -0.036 4.036 24 Cl -0.016 7.016 25 H 0.014 0.986 26 H 0.049 0.951 27 H 0.050 0.950 28 H 0.265 0.735 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.115 0.885 36 H 0.213 0.787 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.925 -27.340 -4.449 27.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.349 5.349 3 C -0.391 4.391 4 H 0.069 0.931 5 C -0.210 4.210 6 N -0.586 5.586 7 Si 0.768 3.232 8 H -0.190 1.190 9 H -0.233 1.233 10 H -0.203 1.203 11 C 0.000 4.000 12 C -0.013 4.013 13 N -0.324 5.324 14 C -0.067 4.067 15 C 0.336 3.664 16 O -0.417 6.417 17 C -0.060 4.060 18 N -0.142 5.142 19 C -0.043 4.043 20 C -0.081 4.081 21 Cl 0.013 6.987 22 C -0.085 4.085 23 C -0.067 4.067 24 Cl 0.014 6.986 25 H 0.033 0.967 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.070 0.930 35 H 0.133 0.867 36 H 0.229 0.771 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 3.705 -26.520 -4.498 27.153 hybrid contribution -0.211 -0.707 0.773 1.069 sum 3.493 -27.227 -3.725 27.702 Atomic orbital electron populations 1.21181 0.82093 1.00378 0.98381 1.44166 1.02458 1.01335 1.86950 1.18780 1.03407 0.90382 1.26578 0.93057 1.25873 0.96969 0.98552 0.99650 1.69960 1.08822 1.37467 1.42322 0.86057 0.77523 0.78881 0.80727 1.18953 1.23316 1.20263 1.21512 0.95920 0.87113 0.95486 1.22006 0.97059 0.83179 0.99007 1.47932 1.08930 1.05221 1.70267 1.22517 0.76974 1.03403 1.03830 1.18130 0.86739 0.83462 0.78074 1.90851 1.13239 1.86857 1.50777 1.20975 0.90577 0.92882 1.01608 1.68443 1.05121 1.29423 1.11196 1.23723 1.02876 0.84750 0.92998 1.22338 0.92384 0.90831 1.02559 1.98438 1.71512 1.32565 1.96207 1.21738 0.92380 0.98479 0.95859 1.21956 0.88462 0.93990 1.02313 1.98450 1.05994 1.98596 1.95584 0.96727 0.93202 0.93089 0.92584 0.93621 0.93871 0.90789 0.90680 0.90822 0.93038 0.86742 0.77097 0.79564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.16 10.70 127.77 1.37 6.53 16 2 N -0.62 -30.71 2.55 -726.96 -1.85 -32.56 16 3 C -0.26 -14.95 9.94 84.03 0.84 -14.12 16 4 H 0.05 3.20 8.06 -2.91 -0.02 3.17 16 5 C -0.01 -0.78 5.34 84.86 0.45 -0.33 16 6 N -0.94 -57.64 13.97 21.65 0.30 -57.34 16 7 Si 0.94 46.45 25.07 68.60 1.72 48.17 16 8 H -0.26 -11.99 6.43 99.48 0.64 -11.35 16 9 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 10 H -0.28 -13.81 7.11 99.48 0.71 -13.11 16 11 C 0.13 5.65 4.85 86.38 0.42 6.07 16 12 C 0.11 4.48 5.71 86.38 0.49 4.97 16 13 N -0.59 -20.31 2.87 -849.99 -2.44 -22.75 16 14 C 0.07 2.13 9.30 127.77 1.19 3.32 16 15 C 0.55 18.25 7.65 86.84 0.66 18.92 16 16 O -0.54 -20.30 13.54 -3.84 -0.05 -20.35 16 17 C 0.08 1.98 6.63 41.89 0.28 2.26 16 18 N -0.43 -8.94 6.01 -184.76 -1.11 -10.05 16 19 C 0.12 1.58 10.98 84.89 0.93 2.51 16 20 C -0.05 -0.64 6.35 22.51 0.14 -0.49 16 21 Cl -0.02 -0.15 28.98 -2.72 -0.08 -0.23 16 22 C -0.06 -0.83 9.78 22.49 0.22 -0.61 16 23 C -0.04 -0.80 6.37 22.69 0.14 -0.65 16 24 Cl -0.02 -0.38 26.05 -2.72 -0.07 -0.46 16 25 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 26 H 0.05 2.01 8.00 -2.39 -0.02 1.99 16 27 H 0.05 1.91 8.11 -2.39 -0.02 1.89 16 28 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 29 H 0.05 2.00 8.07 -2.39 -0.02 1.98 16 30 H 0.04 2.07 2.60 -2.39 -0.01 2.06 16 31 H 0.07 3.12 8.07 -2.39 -0.02 3.10 16 32 H 0.07 3.03 7.40 -2.39 -0.02 3.02 16 33 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.05 1.64 8.02 -2.39 -0.02 1.62 16 35 H 0.11 2.91 5.25 -2.98 -0.02 2.89 16 36 H 0.21 1.37 8.06 -2.91 -0.02 1.35 16 37 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -68.99 337.59 4.59 -64.40 By element: Atomic # 1 Polarization: 1.76 SS G_CDS: 1.04 Total: 2.80 kcal Atomic # 6 Polarization: 21.23 SS G_CDS: 7.14 Total: 28.36 kcal Atomic # 7 Polarization: -117.60 SS G_CDS: -5.10 Total: -122.70 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.05 Total: -20.35 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 1.72 Total: 48.17 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -0.15 Total: -0.69 kcal Total: -68.99 4.59 -64.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268252059.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.874 kcal (2) G-P(sol) polarization free energy of solvation -68.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds