Wall clock time and date at job start Tue Mar 31 2020 17:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47565 * 2 1 4 4 C 1.46493 * 120.00222 * 270.00535 * 3 2 1 5 5 C 1.52996 * 109.47508 * 269.99766 * 4 3 2 6 6 N 1.46493 * 109.47508 * 179.97438 * 5 4 3 7 7 C 1.36942 * 120.00088 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00043 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99807 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00112 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46740 * 89.99891 * 11 9 7 13 13 H 1.48498 * 109.47223 * 210.00002 * 11 9 7 14 14 H 1.48500 * 109.47029 * 329.99956 * 11 9 7 15 15 C 1.34770 * 119.99689 * 90.00274 * 3 2 1 16 16 O 1.21532 * 120.00021 * 180.02562 * 15 3 2 17 17 C 1.48003 * 120.00369 * 359.97438 * 15 3 2 18 18 C 1.39974 * 120.94698 * 270.00772 * 17 15 3 19 19 Cl 1.73601 * 120.50586 * 0.24419 * 18 17 15 20 20 C 1.38295 * 118.97923 * 179.97438 * 18 17 15 21 21 N 1.31789 * 120.91569 * 359.97438 * 20 18 17 22 22 C 1.31790 * 122.09765 * 359.97438 * 21 20 18 23 23 C 1.38300 * 120.91175 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 120.50985 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.46950 * 299.99550 * 1 2 3 26 26 H 1.08993 * 109.47275 * 59.99327 * 1 2 3 27 27 H 1.08994 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46664 * 240.00192 * 2 1 3 29 29 H 1.08998 * 109.47719 * 120.00829 * 2 1 3 30 30 H 1.09009 * 109.47282 * 29.99350 * 4 3 2 31 31 H 1.08999 * 109.47312 * 149.99293 * 4 3 2 32 32 H 1.09005 * 109.47106 * 300.00488 * 5 4 3 33 33 H 1.09007 * 109.47071 * 59.99746 * 5 4 3 34 34 H 0.96990 * 120.00161 * 359.97438 * 6 5 4 35 35 H 0.97002 * 120.00068 * 180.02562 * 10 9 7 36 36 H 1.08003 * 119.53655 * 179.97438 * 20 18 17 37 37 H 1.07998 * 119.54666 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7074 1.8315 -1.7105 6 7 3.9514 2.5216 -2.9794 7 6 5.1837 2.4494 -3.5723 8 1 5.9756 1.8833 -3.1045 9 6 5.4147 3.1029 -4.7750 10 7 6.5990 3.0331 -5.3450 11 14 4.0447 4.0815 -5.5844 12 1 4.0857 5.4846 -5.0997 13 1 4.2261 4.0613 -7.0581 14 1 2.7334 3.4764 -5.2387 15 6 2.2431 2.0164 1.1672 16 8 2.6479 3.1624 1.1672 17 6 1.9959 1.3189 2.4489 18 6 0.7440 1.3803 3.0720 19 17 -0.5568 2.2748 2.3500 20 6 0.5578 0.7126 4.2687 21 7 1.5381 0.0264 4.8209 22 6 2.7314 -0.0586 4.2681 23 6 3.0069 0.5774 3.0714 24 17 4.5828 0.4591 2.3528 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 4.3884 2.2154 -0.9508 33 1 3.8744 0.7622 -1.8409 34 1 3.2401 3.0297 -3.3997 35 1 6.7605 3.4900 -6.1852 36 1 -0.4044 0.7542 4.7575 37 1 3.5051 -0.6321 4.7568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268476819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:54 Heat of formation + Delta-G solvation = 14.133573 kcal Electronic energy + Delta-G solvation = -23923.972543 eV Core-core repulsion = 20175.197864 eV Total energy + Delta-G solvation = -3748.774679 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.26555 -39.61097 -37.35385 -37.03781 -36.45877 -34.86149 -33.14751 -31.77993 -31.58027 -30.64126 -28.30234 -25.52393 -24.26878 -23.73603 -23.26083 -21.51086 -20.03311 -18.12797 -17.75000 -17.60243 -17.18608 -16.66859 -15.89646 -15.20150 -15.11065 -14.89062 -14.42411 -14.24422 -13.93106 -13.77368 -13.65313 -13.12938 -13.02354 -12.74116 -12.65187 -12.47405 -12.10005 -11.86553 -11.62660 -11.47756 -11.22387 -11.19755 -11.10690 -10.77223 -10.68965 -10.20642 -10.18014 -9.87523 -9.60500 -9.46874 -8.90364 -8.78324 -7.25534 -5.76647 -3.13179 0.12001 0.13534 1.21145 1.60682 2.22427 2.63461 2.86282 3.37174 3.41165 3.45784 3.73432 3.79142 4.03042 4.20917 4.47341 4.59311 4.65990 4.79516 4.94779 5.09919 5.16507 5.32228 5.39944 5.52093 5.56150 5.59043 5.59925 5.69994 5.87877 5.95788 6.29986 6.56974 6.74517 7.04003 7.16009 7.85883 7.98670 8.41395 9.19696 9.91798 10.10728 11.41637 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.003619 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.195767 B = 7734.541042 C = 8652.534668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.101 3.899 3 N -0.589 5.589 4 C 0.105 3.895 5 C 0.147 3.853 6 N -0.753 5.753 7 C -0.243 4.243 8 H 0.090 0.910 9 C 0.005 3.995 10 N -0.934 5.934 11 Si 0.885 3.115 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.277 1.277 15 C 0.561 3.439 16 O -0.500 6.500 17 C -0.052 4.052 18 C -0.058 4.058 19 Cl -0.021 7.021 20 C 0.120 3.880 21 N -0.445 5.445 22 C 0.122 3.878 23 C -0.060 4.060 24 Cl -0.013 7.013 25 H 0.062 0.938 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.032 0.968 33 H 0.028 0.972 34 H 0.361 0.639 35 H 0.260 0.740 36 H 0.179 0.821 37 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.310 -9.650 21.174 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.022 4.022 3 N -0.321 5.321 4 C -0.017 4.017 5 C 0.019 3.981 6 N -0.399 5.399 7 C -0.373 4.373 8 H 0.107 0.893 9 C -0.190 4.190 10 N -0.581 5.581 11 Si 0.716 3.284 12 H -0.210 1.210 13 H -0.217 1.217 14 H -0.204 1.204 15 C 0.345 3.655 16 O -0.374 6.374 17 C -0.065 4.065 18 C -0.088 4.088 19 Cl 0.008 6.992 20 C -0.037 4.037 21 N -0.154 5.154 22 C -0.036 4.036 23 C -0.090 4.090 24 Cl 0.016 6.984 25 H 0.080 0.920 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.046 0.954 34 H 0.194 0.806 35 H 0.070 0.930 36 H 0.196 0.804 37 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -15.967 -9.442 21.754 28.589 hybrid contribution -0.675 1.148 -1.604 2.085 sum -16.642 -8.294 20.150 27.418 Atomic orbital electron populations 1.22411 0.95427 1.02668 1.03467 1.21651 0.94788 0.82074 1.03691 1.47773 1.64412 1.14364 1.05565 1.21823 0.98566 0.98487 0.82850 1.20877 0.92467 0.96016 0.88744 1.42539 1.12426 1.61900 1.23043 1.19014 0.88207 1.27225 1.02867 0.89253 1.24664 0.96458 1.00347 0.97578 1.69703 1.20941 1.47823 1.19669 0.86535 0.82201 0.80735 0.78969 1.20952 1.21673 1.20350 1.17762 0.78727 0.86192 0.82858 1.90891 1.43870 1.16358 1.86286 1.20333 0.92178 0.96668 0.97287 1.22121 0.89917 0.99906 0.96885 1.98427 1.46008 1.72646 1.82129 1.22930 0.99246 0.91386 0.90187 1.67861 0.99911 1.15860 1.31765 1.22975 0.94769 0.95706 0.90157 1.22235 0.89531 1.00420 0.96823 1.98481 1.21151 1.96548 1.82224 0.91955 0.91686 0.91283 0.88936 0.91124 0.89966 0.89447 0.94961 0.95449 0.80648 0.93019 0.80429 0.80280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 29. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.54 10.24 37.16 0.38 -1.16 16 2 C 0.10 1.02 5.95 -4.04 -0.02 1.00 16 3 N -0.59 -7.95 2.47 -174.75 -0.43 -8.38 16 4 C 0.10 1.66 5.52 -4.05 -0.02 1.64 16 5 C 0.15 2.94 6.58 -4.05 -0.03 2.92 16 6 N -0.75 -18.32 5.41 -59.91 -0.32 -18.64 16 7 C -0.24 -7.05 10.47 -15.06 -0.16 -7.21 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 10 N -0.93 -29.69 13.97 55.49 0.78 -28.91 16 11 Si 0.89 22.32 27.74 -169.99 -4.71 17.61 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 14 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 15 C 0.56 8.27 5.49 -12.26 -0.07 8.21 16 16 O -0.50 -9.41 16.68 5.34 0.09 -9.32 16 17 C -0.05 -0.61 3.96 -104.59 -0.41 -1.02 16 18 C -0.06 -0.57 5.73 -38.91 -0.22 -0.79 16 19 Cl -0.02 -0.20 25.71 -51.86 -1.33 -1.54 16 20 C 0.12 0.93 10.98 -17.55 -0.19 0.74 16 21 N -0.45 -3.76 10.33 -13.24 -0.14 -3.90 16 22 C 0.12 1.00 10.98 -17.55 -0.19 0.80 16 23 C -0.06 -0.63 5.96 -38.91 -0.23 -0.86 16 24 Cl -0.01 -0.16 28.17 -51.86 -1.46 -1.62 16 25 H 0.06 0.54 4.53 -51.93 -0.23 0.31 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.09 0.90 8.07 -51.92 -0.42 0.48 16 29 H 0.07 0.66 6.56 -51.93 -0.34 0.32 16 30 H 0.08 1.14 8.07 -51.92 -0.42 0.72 16 31 H 0.09 1.50 7.42 -51.93 -0.39 1.12 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 35 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 36 H 0.18 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.18 0.97 8.06 -52.49 -0.42 0.54 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -34.66 343.80 -7.78 -42.43 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -4.15 Total: 2.77 kcal Atomic # 6 Polarization: 5.59 SS G_CDS: -1.27 Total: 4.32 kcal Atomic # 7 Polarization: -59.72 SS G_CDS: -0.12 Total: -59.84 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.32 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.71 Total: 17.61 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -2.79 Total: -3.15 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.66 -7.78 -42.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268476819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.567 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds