Wall clock time and date at job start Tue Mar 31 2020 17:20:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47565 * 2 1 4 4 C 1.46493 * 120.00222 * 270.00535 * 3 2 1 5 5 C 1.52996 * 109.47508 * 269.99766 * 4 3 2 6 6 N 1.46493 * 109.47508 * 179.97438 * 5 4 3 7 7 C 1.36942 * 120.00088 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99829 * 0.02562 * 7 6 5 9 9 C 1.38811 * 120.00043 * 179.97438 * 7 6 5 10 10 N 1.31620 * 119.99807 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 120.00112 * 0.02562 * 9 7 6 12 12 H 1.48503 * 109.46740 * 89.99891 * 11 9 7 13 13 H 1.48498 * 109.47223 * 210.00002 * 11 9 7 14 14 H 1.48500 * 109.47029 * 329.99956 * 11 9 7 15 15 C 1.34770 * 119.99689 * 90.00274 * 3 2 1 16 16 O 1.21532 * 120.00021 * 180.02562 * 15 3 2 17 17 C 1.48003 * 120.00369 * 359.97438 * 15 3 2 18 18 C 1.39974 * 120.94698 * 270.00772 * 17 15 3 19 19 Cl 1.73601 * 120.50586 * 0.24419 * 18 17 15 20 20 C 1.38295 * 118.97923 * 179.97438 * 18 17 15 21 21 N 1.31789 * 120.91569 * 359.97438 * 20 18 17 22 22 C 1.31790 * 122.09765 * 359.97438 * 21 20 18 23 23 C 1.38300 * 120.91175 * 0.02562 * 22 21 20 24 24 Cl 1.73601 * 120.50985 * 179.97438 * 23 22 21 25 25 H 1.09002 * 109.46950 * 299.99550 * 1 2 3 26 26 H 1.08993 * 109.47275 * 59.99327 * 1 2 3 27 27 H 1.08994 * 109.47242 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46664 * 240.00192 * 2 1 3 29 29 H 1.08998 * 109.47719 * 120.00829 * 2 1 3 30 30 H 1.09009 * 109.47282 * 29.99350 * 4 3 2 31 31 H 1.08999 * 109.47312 * 149.99293 * 4 3 2 32 32 H 1.09005 * 109.47106 * 300.00488 * 5 4 3 33 33 H 1.09007 * 109.47071 * 59.99746 * 5 4 3 34 34 H 0.96990 * 120.00161 * 359.97438 * 6 5 4 35 35 H 0.97002 * 120.00068 * 180.02562 * 10 9 7 36 36 H 1.08003 * 119.53655 * 179.97438 * 20 18 17 37 37 H 1.07998 * 119.54666 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2686 5 6 3.7074 1.8315 -1.7105 6 7 3.9514 2.5216 -2.9794 7 6 5.1837 2.4494 -3.5723 8 1 5.9756 1.8833 -3.1045 9 6 5.4147 3.1029 -4.7750 10 7 6.5990 3.0331 -5.3450 11 14 4.0447 4.0815 -5.5844 12 1 4.0857 5.4846 -5.0997 13 1 4.2261 4.0613 -7.0581 14 1 2.7334 3.4764 -5.2387 15 6 2.2431 2.0164 1.1672 16 8 2.6479 3.1624 1.1672 17 6 1.9959 1.3189 2.4489 18 6 0.7440 1.3803 3.0720 19 17 -0.5568 2.2748 2.3500 20 6 0.5578 0.7126 4.2687 21 7 1.5381 0.0264 4.8209 22 6 2.7314 -0.0586 4.2681 23 6 3.0069 0.5774 3.0714 24 17 4.5828 0.4591 2.3528 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5817 1.6877 -2.0284 31 1 2.0955 3.1410 -1.1383 32 1 4.3884 2.2154 -0.9508 33 1 3.8744 0.7622 -1.8409 34 1 3.2401 3.0297 -3.3997 35 1 6.7605 3.4900 -6.1852 36 1 -0.4044 0.7542 4.7575 37 1 3.5051 -0.6321 4.7568 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268476819.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:20:53 Heat of formation + Delta-G solvation = -9.484858 kcal Electronic energy + Delta-G solvation = -23924.996715 eV Core-core repulsion = 20175.197864 eV Total energy + Delta-G solvation = -3749.798851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12472 -40.60783 -38.12275 -37.85219 -37.75653 -36.56964 -34.22072 -33.53130 -32.27876 -31.86867 -29.76887 -26.68112 -25.18595 -24.92171 -24.30817 -23.27803 -21.10159 -19.77305 -18.94817 -18.52427 -18.05687 -17.75902 -16.93399 -16.38310 -16.26259 -15.82749 -15.79920 -15.42124 -15.37260 -15.10235 -14.83727 -14.67577 -13.93148 -13.81293 -13.60963 -13.50276 -13.21984 -13.03652 -12.92151 -12.86340 -12.60926 -12.36518 -12.28459 -12.11659 -11.97253 -11.84936 -11.67832 -11.04765 -11.00010 -10.79518 -10.17708 -9.95414 -9.38977 -8.06573 -5.42710 -0.66403 -0.55752 0.45019 0.82908 1.12396 1.35919 1.41604 1.47856 1.60967 2.15698 2.46003 2.87471 3.14207 3.24688 3.30691 3.43936 3.65430 3.78856 3.88270 3.98605 4.05574 4.15097 4.29567 4.44956 4.47261 4.49424 4.75572 4.84222 4.97686 4.98288 5.00198 5.28603 5.34388 5.69162 6.07058 6.15877 6.36842 6.75078 7.01842 7.74302 7.95920 9.14731 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017396 B = 0.003619 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.195767 B = 7734.541042 C = 8652.534668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.095 3.905 3 N -0.586 5.586 4 C 0.117 3.883 5 C 0.152 3.848 6 N -0.753 5.753 7 C -0.241 4.241 8 H 0.051 0.949 9 C -0.061 4.061 10 N -0.982 5.982 11 Si 0.958 3.042 12 H -0.281 1.281 13 H -0.291 1.291 14 H -0.244 1.244 15 C 0.561 3.439 16 O -0.552 6.552 17 C -0.067 4.067 18 C -0.062 4.062 19 Cl -0.022 7.022 20 C 0.137 3.863 21 N -0.447 5.447 22 C 0.136 3.864 23 C -0.070 4.070 24 Cl -0.034 7.034 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.110 0.890 31 H 0.073 0.927 32 H 0.005 0.995 33 H 0.034 0.966 34 H 0.369 0.631 35 H 0.260 0.740 36 H 0.212 0.788 37 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.479 -10.646 22.365 31.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 N -0.317 5.317 4 C -0.006 4.006 5 C 0.024 3.976 6 N -0.400 5.400 7 C -0.372 4.372 8 H 0.069 0.931 9 C -0.252 4.252 10 N -0.632 5.632 11 Si 0.784 3.216 12 H -0.207 1.207 13 H -0.217 1.217 14 H -0.168 1.168 15 C 0.347 3.653 16 O -0.429 6.429 17 C -0.080 4.080 18 C -0.092 4.092 19 Cl 0.007 6.993 20 C -0.020 4.020 21 N -0.156 5.156 22 C -0.021 4.021 23 C -0.100 4.100 24 Cl -0.005 7.005 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.110 0.890 28 H 0.117 0.883 29 H 0.098 0.902 30 H 0.128 0.872 31 H 0.092 0.908 32 H 0.023 0.977 33 H 0.052 0.948 34 H 0.203 0.797 35 H 0.069 0.931 36 H 0.229 0.771 37 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -19.187 -10.496 22.985 31.727 hybrid contribution 0.355 1.371 -1.853 2.332 sum -18.831 -9.126 21.132 29.740 Atomic orbital electron populations 1.22370 0.93675 1.04094 1.03223 1.21923 0.96181 0.80054 1.04497 1.47854 1.63771 1.15522 1.04511 1.21537 0.96002 0.98352 0.84675 1.20911 0.94924 0.95491 0.86258 1.42472 1.10991 1.62370 1.24172 1.18952 0.89159 1.26205 1.02882 0.93051 1.25556 0.99350 1.01944 0.98378 1.69891 1.23638 1.49360 1.20309 0.85375 0.80099 0.78791 0.77344 1.20746 1.21714 1.16763 1.18199 0.77452 0.85667 0.84016 1.90856 1.46196 1.18679 1.87189 1.20169 0.93696 0.97767 0.96357 1.22211 0.89169 1.00365 0.97456 1.98429 1.45783 1.72779 1.82294 1.23459 1.00212 0.89411 0.88962 1.68012 1.00011 1.15991 1.31561 1.23388 0.95301 0.94516 0.88899 1.22316 0.88434 1.01510 0.97708 1.98476 1.22592 1.96706 1.82705 0.92184 0.91930 0.88993 0.88315 0.90197 0.87189 0.90817 0.97728 0.94819 0.79745 0.93122 0.77138 0.77585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.49 10.24 71.98 0.74 -1.75 16 2 C 0.09 1.74 5.95 86.38 0.51 2.25 16 3 N -0.59 -15.33 2.47 -825.06 -2.04 -17.37 16 4 C 0.12 3.61 5.52 86.38 0.48 4.09 16 5 C 0.15 6.11 6.58 86.38 0.57 6.68 16 6 N -0.75 -36.53 5.41 -343.45 -1.86 -38.39 16 7 C -0.24 -14.29 10.47 84.03 0.88 -13.41 16 8 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 9 C -0.06 -3.65 5.50 84.86 0.47 -3.18 16 10 N -0.98 -64.06 13.97 21.65 0.30 -63.76 16 11 Si 0.96 45.78 27.74 68.60 1.90 47.68 16 12 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 13 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 14 H -0.24 -10.20 6.52 99.48 0.65 -9.55 16 15 C 0.56 16.46 5.49 86.83 0.48 16.94 16 16 O -0.55 -21.31 16.68 -3.82 -0.06 -21.37 16 17 C -0.07 -1.51 3.96 -19.85 -0.08 -1.59 16 18 C -0.06 -1.08 5.73 22.70 0.13 -0.95 16 19 Cl -0.02 -0.38 25.71 -2.72 -0.07 -0.45 16 20 C 0.14 1.68 10.98 84.71 0.93 2.61 16 21 N -0.45 -6.14 10.33 -195.80 -2.02 -8.16 16 22 C 0.14 1.90 10.98 84.71 0.93 2.83 16 23 C -0.07 -1.38 5.96 22.71 0.14 -1.24 16 24 Cl -0.03 -0.80 28.17 -2.72 -0.08 -0.87 16 25 H 0.06 0.89 4.53 -2.39 -0.01 0.88 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.09 0.90 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.70 8.07 -2.38 -0.02 1.68 16 29 H 0.08 1.34 6.56 -2.39 -0.02 1.32 16 30 H 0.11 2.79 8.07 -2.38 -0.02 2.77 16 31 H 0.07 2.51 7.42 -2.39 -0.02 2.50 16 32 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 33 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.37 16.63 5.53 -92.72 -0.51 16.12 16 35 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 36 H 0.21 1.11 8.06 -2.91 -0.02 1.08 16 37 H 0.21 1.63 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -77.68 343.80 2.79 -74.88 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: 0.55 Total: 14.52 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: 6.17 Total: 13.28 kcal Atomic # 7 Polarization: -122.05 SS G_CDS: -5.62 Total: -127.67 kcal Atomic # 8 Polarization: -21.31 SS G_CDS: -0.06 Total: -21.37 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.90 Total: 47.68 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.15 Total: -1.33 kcal Total: -77.68 2.79 -74.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268476819.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.400 kcal (2) G-P(sol) polarization free energy of solvation -77.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds