Wall clock time and date at job start Tue Mar 31 2020 17:08:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47077 * 10.10711 * 3 2 1 5 5 C 1.36899 * 119.99707 * 281.27821 * 4 3 2 6 6 H 1.08002 * 120.00740 * 316.00883 * 5 4 3 7 7 C 1.39031 * 119.99833 * 136.01571 * 5 4 3 8 8 N 1.31379 * 119.99709 * 338.07404 * 7 5 4 9 9 Si 1.86797 * 120.00164 * 158.07852 * 7 5 4 10 10 H 1.48500 * 109.47017 * 89.99585 * 9 7 5 11 11 H 1.48499 * 109.47111 * 209.99771 * 9 7 5 12 12 H 1.48504 * 109.46898 * 330.00015 * 9 7 5 13 13 C 1.34780 * 119.99689 * 101.28005 * 4 3 2 14 14 O 1.21628 * 119.99464 * 187.03050 * 13 4 3 15 15 C 1.47428 * 120.00305 * 6.75971 * 13 4 3 16 16 C 1.39815 * 120.18669 * 322.18655 * 15 13 4 17 17 C 1.37741 * 119.94275 * 179.69777 * 16 15 13 18 18 C 1.38573 * 120.32320 * 0.59674 * 17 16 15 19 19 C 1.38228 * 120.37789 * 359.68025 * 18 17 16 20 20 F 1.35098 * 119.97500 * 180.02562 * 19 18 17 21 21 C 1.38891 * 120.04669 * 0.02562 * 19 18 17 22 22 O 1.35716 * 120.15975 * 180.02562 * 21 19 18 23 23 C 1.42903 * 117.00097 * 269.97989 * 22 21 19 24 24 F 1.39901 * 109.47153 * 60.00039 * 23 22 21 25 25 F 1.39902 * 109.47158 * 180.02562 * 23 22 21 26 26 F 1.39901 * 109.47022 * 300.00243 * 23 22 21 27 27 H 4.40644 * 5.51378 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46971 * 250.10596 * 3 2 1 29 29 H 1.09001 * 109.47044 * 130.10306 * 3 2 1 30 30 H 0.97002 * 119.99956 * 185.06669 * 8 7 5 31 31 H 1.08000 * 120.02259 * 359.97438 * 16 15 13 32 32 H 1.08001 * 119.83778 * 180.29424 * 17 16 15 33 33 H 1.08004 * 119.81258 * 179.69300 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3590 -0.2424 5 6 3.1449 -2.2744 0.7755 6 1 3.4929 -1.9872 1.7568 7 6 2.7072 -3.5738 0.5460 8 7 1.9046 -3.8281 -0.4626 9 14 3.2600 -4.9582 1.6717 10 1 2.2982 -5.0972 2.7945 11 1 3.3126 -6.2287 0.9047 12 1 4.6088 -4.6491 2.2107 13 6 3.5750 -1.7084 -1.4675 14 8 3.8602 -2.8670 -1.7035 15 6 3.7050 -0.6874 -2.5231 16 6 2.7582 0.3356 -2.6320 17 6 2.8880 1.2905 -3.6163 18 6 3.9467 1.2360 -4.5086 19 6 4.8872 0.2272 -4.4167 20 9 5.9164 0.1822 -5.2907 21 6 4.7749 -0.7402 -3.4265 22 8 5.6972 -1.7314 -3.3338 23 6 5.4412 -2.9272 -4.0732 24 9 5.3522 -2.6228 -5.4358 25 9 6.4839 -3.8364 -3.8652 26 9 4.2366 -3.4931 -3.6422 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.3505 0.9663 29 1 3.0090 0.6628 -0.7861 30 1 1.5404 -4.7195 -0.5799 31 1 1.9284 0.3796 -1.9422 32 1 2.1583 2.0827 -3.6959 33 1 4.0377 1.9862 -5.2803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270093598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:31 Heat of formation + Delta-G solvation = -147.487812 kcal Electronic energy + Delta-G solvation = -29879.006072 eV Core-core repulsion = 24987.336853 eV Total energy + Delta-G solvation = -4891.669219 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.062 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.58052 -48.87644 -47.44870 -47.02281 -40.13512 -38.12172 -37.13735 -34.86982 -32.74772 -31.50867 -30.52838 -30.01324 -26.59599 -25.56626 -24.87800 -23.05935 -22.44023 -20.33097 -19.12768 -18.49957 -18.31840 -17.94705 -17.74521 -16.47876 -16.39059 -16.20939 -15.58325 -15.40966 -14.93737 -14.67878 -14.21618 -14.15397 -14.10643 -13.96817 -13.77702 -13.68181 -13.37200 -13.31446 -13.19210 -13.00486 -12.67338 -12.48167 -12.01602 -11.74341 -11.45866 -11.34088 -10.93881 -10.86116 -10.72639 -10.36161 -9.84926 -9.63403 -8.91848 -8.88075 -8.60936 -8.21297 -7.37055 -6.25933 -3.98011 0.72368 1.02821 2.40978 3.20959 3.26446 3.35407 3.36777 3.39232 3.46544 3.60728 3.97574 4.23323 4.37316 4.60182 4.62483 4.80381 4.92230 5.00324 5.06831 5.22678 5.25827 5.27896 5.49846 5.80834 5.95911 6.02402 6.12842 6.23833 6.31946 6.48625 6.52263 7.06245 7.47990 8.07014 8.24155 8.81016 8.93327 9.41987 10.02076 10.80648 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.006802 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.925842 B = 4115.491831 C = 5901.664213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.172 4.172 3 C 0.182 3.818 4 N -0.428 5.428 5 C -0.349 4.349 6 H 0.087 0.913 7 C 0.077 3.923 8 N -0.806 5.806 9 Si 0.914 3.086 10 H -0.281 1.281 11 H -0.282 1.282 12 H -0.268 1.268 13 C 0.495 3.505 14 O -0.499 6.499 15 C -0.059 4.059 16 C -0.121 4.121 17 C -0.082 4.082 18 C -0.152 4.152 19 C 0.102 3.898 20 F -0.128 7.128 21 C 0.060 3.940 22 O -0.306 6.306 23 C 0.591 3.409 24 F -0.186 7.186 25 F -0.145 7.145 26 F -0.126 7.126 27 H 0.209 0.791 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.268 0.732 31 H 0.156 0.844 32 H 0.141 0.859 33 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.948 10.209 -6.290 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.173 4.173 3 C 0.060 3.940 4 N -0.148 5.148 5 C -0.475 4.475 6 H 0.104 0.896 7 C -0.137 4.137 8 N -0.437 5.437 9 Si 0.740 3.260 10 H -0.208 1.208 11 H -0.208 1.208 12 H -0.193 1.193 13 C 0.283 3.717 14 O -0.375 6.375 15 C -0.064 4.064 16 C -0.140 4.140 17 C -0.100 4.100 18 C -0.172 4.172 19 C 0.082 3.918 20 F -0.107 7.107 21 C 0.014 3.986 22 O -0.227 6.227 23 C 0.502 3.498 24 F -0.168 7.168 25 F -0.126 7.126 26 F -0.107 7.107 27 H 0.226 0.774 28 H 0.102 0.898 29 H 0.115 0.885 30 H 0.078 0.922 31 H 0.173 0.827 32 H 0.158 0.842 33 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.273 9.343 -6.488 11.446 hybrid contribution -0.053 -0.908 0.153 0.922 sum 1.220 8.436 -6.335 10.620 Atomic orbital electron populations 1.24664 0.95677 1.01270 1.01828 1.23657 0.94941 0.99413 0.99338 1.19187 0.83648 0.88725 1.02479 1.43158 1.53410 1.08793 1.09437 1.19056 1.46122 0.90611 0.91695 0.89586 1.25293 0.93488 0.99019 0.95892 1.69844 1.24010 1.22048 1.27817 0.86189 0.79446 0.81012 0.79361 1.20775 1.20756 1.19295 1.17552 0.83675 0.87652 0.82812 1.90752 1.50587 1.17871 1.78339 1.20943 0.92188 0.97038 0.96199 1.21993 0.99522 0.93436 0.99000 1.21083 0.96862 0.98677 0.93379 1.21065 0.95085 0.98787 1.02219 1.17851 0.87632 0.97544 0.88782 1.91514 1.56172 1.96116 1.66848 1.18250 0.92832 0.89824 0.97649 1.86390 1.45181 1.23204 1.67895 1.19878 0.75684 0.79773 0.74477 1.93225 1.96138 1.93034 1.34414 1.93218 1.59115 1.65400 1.94898 1.93539 1.44020 1.84914 1.88271 0.77400 0.89761 0.88517 0.92228 0.82675 0.84152 0.83930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.67 19.25 29.55 0.57 -3.11 16 2 C -0.17 -3.23 11.57 -37.12 -0.43 -3.66 16 3 C 0.18 3.41 5.40 -6.82 -0.04 3.38 16 4 N -0.43 -10.28 2.50 -119.15 -0.30 -10.58 16 5 C -0.35 -9.19 9.12 -15.00 -0.14 -9.32 16 6 H 0.09 2.16 7.92 -52.49 -0.42 1.74 16 7 C 0.08 2.09 4.27 -17.45 -0.07 2.02 16 8 N -0.81 -23.08 11.76 55.50 0.65 -22.43 16 9 Si 0.91 21.44 29.61 -169.99 -5.03 16.41 16 10 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.50 12.29 6.66 -12.52 -0.08 12.21 16 14 O -0.50 -14.04 9.63 -11.55 -0.11 -14.15 16 15 C -0.06 -1.18 5.29 -104.86 -0.56 -1.74 16 16 C -0.12 -1.94 7.35 -39.17 -0.29 -2.23 16 17 C -0.08 -1.00 10.02 -39.64 -0.40 -1.39 16 18 C -0.15 -1.90 10.01 -39.46 -0.39 -2.30 16 19 C 0.10 1.64 7.02 -39.34 -0.28 1.37 16 20 F -0.13 -2.06 16.77 2.25 0.04 -2.03 16 21 C 0.06 1.16 5.35 -38.63 -0.21 0.96 16 22 O -0.31 -6.48 9.30 -35.66 -0.33 -6.81 16 23 C 0.59 12.24 3.66 101.05 0.37 12.61 16 24 F -0.19 -3.46 16.63 2.25 0.04 -3.42 16 25 F -0.14 -2.87 17.53 2.25 0.04 -2.83 16 26 F -0.13 -3.00 13.14 2.25 0.03 -2.97 16 27 H 0.21 2.74 7.80 -54.10 -0.42 2.31 16 28 H 0.08 1.43 8.12 -51.93 -0.42 1.01 16 29 H 0.10 1.55 4.27 -51.93 -0.22 1.33 16 30 H 0.27 7.37 8.32 -40.82 -0.34 7.04 16 31 H 0.16 2.51 4.06 -52.49 -0.21 2.30 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.14 1.30 8.06 -52.48 -0.42 0.88 16 LS Contribution 309.77 15.07 4.67 4.67 Total: -1.00 -32.22 309.77 -3.92 -36.14 By element: Atomic # 1 Polarization: 0.89 SS G_CDS: -1.67 Total: -0.79 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.94 Total: 8.78 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.36 Total: -33.01 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -0.44 Total: -20.96 kcal Atomic # 9 Polarization: -11.39 SS G_CDS: 0.14 Total: -11.24 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -32.22 -3.92 -36.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270093598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.345 kcal (2) G-P(sol) polarization free energy of solvation -32.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds