Wall clock time and date at job start Tue Mar 31 2020 17:08:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46505 * 109.47077 * 10.10711 * 3 2 1 5 5 C 1.36899 * 119.99707 * 281.27821 * 4 3 2 6 6 H 1.08002 * 120.00740 * 316.00883 * 5 4 3 7 7 C 1.39031 * 119.99833 * 136.01571 * 5 4 3 8 8 N 1.31379 * 119.99709 * 338.07404 * 7 5 4 9 9 Si 1.86797 * 120.00164 * 158.07852 * 7 5 4 10 10 H 1.48500 * 109.47017 * 89.99585 * 9 7 5 11 11 H 1.48499 * 109.47111 * 209.99771 * 9 7 5 12 12 H 1.48504 * 109.46898 * 330.00015 * 9 7 5 13 13 C 1.34780 * 119.99689 * 101.28005 * 4 3 2 14 14 O 1.21628 * 119.99464 * 187.03050 * 13 4 3 15 15 C 1.47428 * 120.00305 * 6.75971 * 13 4 3 16 16 C 1.39815 * 120.18669 * 322.18655 * 15 13 4 17 17 C 1.37741 * 119.94275 * 179.69777 * 16 15 13 18 18 C 1.38573 * 120.32320 * 0.59674 * 17 16 15 19 19 C 1.38228 * 120.37789 * 359.68025 * 18 17 16 20 20 F 1.35098 * 119.97500 * 180.02562 * 19 18 17 21 21 C 1.38891 * 120.04669 * 0.02562 * 19 18 17 22 22 O 1.35716 * 120.15975 * 180.02562 * 21 19 18 23 23 C 1.42903 * 117.00097 * 269.97989 * 22 21 19 24 24 F 1.39901 * 109.47153 * 60.00039 * 23 22 21 25 25 F 1.39902 * 109.47158 * 180.02562 * 23 22 21 26 26 F 1.39901 * 109.47022 * 300.00243 * 23 22 21 27 27 H 4.40644 * 5.51378 * 180.02562 * 4 1 2 28 28 H 1.08998 * 109.46971 * 250.10596 * 3 2 1 29 29 H 1.09001 * 109.47044 * 130.10306 * 3 2 1 30 30 H 0.97002 * 119.99956 * 185.06669 * 8 7 5 31 31 H 1.08000 * 120.02259 * 359.97438 * 16 15 13 32 32 H 1.08001 * 119.83778 * 180.29424 * 17 16 15 33 33 H 1.08004 * 119.81258 * 179.69300 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3590 -0.2424 5 6 3.1449 -2.2744 0.7755 6 1 3.4929 -1.9872 1.7568 7 6 2.7072 -3.5738 0.5460 8 7 1.9046 -3.8281 -0.4626 9 14 3.2600 -4.9582 1.6717 10 1 2.2982 -5.0972 2.7945 11 1 3.3126 -6.2287 0.9047 12 1 4.6088 -4.6491 2.2107 13 6 3.5750 -1.7084 -1.4675 14 8 3.8602 -2.8670 -1.7035 15 6 3.7050 -0.6874 -2.5231 16 6 2.7582 0.3356 -2.6320 17 6 2.8880 1.2905 -3.6163 18 6 3.9467 1.2360 -4.5086 19 6 4.8872 0.2272 -4.4167 20 9 5.9164 0.1822 -5.2907 21 6 4.7749 -0.7402 -3.4265 22 8 5.6972 -1.7314 -3.3338 23 6 5.4412 -2.9272 -4.0732 24 9 5.3522 -2.6228 -5.4358 25 9 6.4839 -3.8364 -3.8652 26 9 4.2366 -3.4931 -3.6422 27 1 -1.0498 -0.0003 -0.0003 28 1 3.0092 0.3505 0.9663 29 1 3.0090 0.6628 -0.7861 30 1 1.5404 -4.7195 -0.5799 31 1 1.9284 0.3796 -1.9422 32 1 2.1583 2.0827 -3.6959 33 1 4.0377 1.9862 -5.2803 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270093598.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:30 Heat of formation + Delta-G solvation = -166.917306 kcal Electronic energy + Delta-G solvation = -29879.848599 eV Core-core repulsion = 24987.336853 eV Total energy + Delta-G solvation = -4892.511746 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 331.062 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -51.20362 -50.12502 -49.03614 -48.72712 -41.60695 -39.76490 -38.54183 -36.58959 -34.52069 -33.06752 -31.97983 -31.30057 -28.18696 -27.17899 -26.54523 -24.53580 -23.77875 -21.99659 -20.63022 -20.09763 -19.91586 -19.35129 -19.34071 -18.03937 -17.79087 -17.62262 -17.00170 -16.89455 -16.64349 -16.06077 -15.86875 -15.72394 -15.70178 -15.56145 -15.36774 -15.16004 -14.96779 -14.94145 -14.83978 -14.38234 -14.22461 -14.09595 -13.56701 -13.12744 -13.05736 -12.79286 -12.73899 -12.73144 -12.25615 -12.14825 -11.30906 -11.01465 -10.82466 -10.26724 -10.02342 -9.81411 -9.26780 -8.25146 -6.00593 -0.60087 -0.20916 0.93974 1.35114 1.43932 1.49964 1.82368 1.96532 2.03963 2.17825 2.34286 2.55282 2.79722 3.02261 3.16122 3.20324 3.30489 3.68237 3.74850 3.82425 3.96604 4.05665 4.18539 4.45302 4.67471 4.75582 4.85076 5.02808 5.14825 5.22719 5.25150 5.46321 5.74666 6.13554 6.86485 6.93826 7.08051 7.53931 8.19313 8.81954 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.006802 C = 0.004743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.925842 B = 4115.491831 C = 5901.664213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.182 3.818 4 N -0.445 5.445 5 C -0.368 4.368 6 H 0.088 0.912 7 C 0.033 3.967 8 N -0.846 5.846 9 Si 0.964 3.036 10 H -0.263 1.263 11 H -0.296 1.296 12 H -0.268 1.268 13 C 0.486 3.514 14 O -0.545 6.545 15 C -0.089 4.089 16 C -0.120 4.120 17 C -0.052 4.052 18 C -0.119 4.119 19 C 0.095 3.905 20 F -0.129 7.129 21 C 0.030 3.970 22 O -0.321 6.321 23 C 0.592 3.408 24 F -0.173 7.173 25 F -0.145 7.145 26 F -0.148 7.148 27 H 0.243 0.757 28 H 0.094 0.906 29 H 0.124 0.876 30 H 0.260 0.740 31 H 0.155 0.845 32 H 0.198 0.802 33 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.010 13.691 -7.559 15.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.216 4.216 3 C 0.061 3.939 4 N -0.166 5.166 5 C -0.495 4.495 6 H 0.105 0.895 7 C -0.176 4.176 8 N -0.480 5.480 9 Si 0.789 3.211 10 H -0.188 1.188 11 H -0.222 1.222 12 H -0.192 1.192 13 C 0.275 3.725 14 O -0.424 6.424 15 C -0.094 4.094 16 C -0.139 4.139 17 C -0.069 4.069 18 C -0.138 4.138 19 C 0.075 3.925 20 F -0.108 7.108 21 C -0.014 4.014 22 O -0.243 6.243 23 C 0.503 3.497 24 F -0.156 7.156 25 F -0.126 7.126 26 F -0.130 7.130 27 H 0.260 0.740 28 H 0.112 0.888 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.173 0.827 32 H 0.215 0.785 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 0.314 12.875 -7.735 15.023 hybrid contribution 0.259 -1.754 0.395 1.816 sum 0.573 11.121 -7.340 13.337 Atomic orbital electron populations 1.25538 0.96598 0.99135 1.00118 1.23822 0.95480 1.01253 1.01026 1.19330 0.84182 0.86404 1.04010 1.43318 1.54101 1.10296 1.08841 1.19267 1.46187 0.91582 0.92497 0.89463 1.25986 0.93509 1.01005 0.97064 1.69947 1.26252 1.21655 1.30113 0.85405 0.79361 0.78067 0.78227 1.18788 1.22196 1.19245 1.18316 0.82248 0.88161 0.83807 1.90707 1.51999 1.20170 1.79559 1.20642 0.94597 0.97839 0.96290 1.22096 0.98282 0.93224 1.00260 1.21664 0.96971 0.97849 0.90420 1.21695 0.92632 0.97353 1.02076 1.18078 0.88534 0.97796 0.88089 1.91515 1.56478 1.96149 1.66634 1.18650 0.93181 0.90393 0.99224 1.86371 1.45961 1.23577 1.68355 1.19870 0.74978 0.79928 0.74954 1.93232 1.96065 1.92928 1.33330 1.93205 1.58867 1.65559 1.94967 1.93492 1.45465 1.85343 1.88694 0.74032 0.88787 0.85882 0.93112 0.82745 0.78528 0.78927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -6.25 19.25 74.32 1.43 -4.82 16 2 C -0.21 -7.81 11.57 31.13 0.36 -7.45 16 3 C 0.18 6.76 5.40 84.57 0.46 7.21 16 4 N -0.45 -21.96 2.50 -649.12 -1.62 -23.58 16 5 C -0.37 -20.09 9.12 84.09 0.77 -19.32 16 6 H 0.09 4.54 7.92 -2.91 -0.02 4.51 16 7 C 0.03 1.89 4.27 84.95 0.36 2.25 16 8 N -0.85 -50.74 11.76 21.68 0.25 -50.48 16 9 Si 0.96 45.76 29.61 68.60 2.03 47.79 16 10 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 11 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 12 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 13 C 0.49 24.90 6.66 86.66 0.58 25.47 16 14 O -0.54 -32.26 9.63 11.95 0.12 -32.14 16 15 C -0.09 -3.57 5.29 -20.02 -0.11 -3.67 16 16 C -0.12 -3.50 7.35 22.53 0.17 -3.34 16 17 C -0.05 -0.94 10.02 22.23 0.22 -0.72 16 18 C -0.12 -2.26 10.01 22.35 0.22 -2.04 16 19 C 0.09 2.78 7.02 22.42 0.16 2.93 16 20 F -0.13 -3.84 16.77 44.97 0.75 -3.08 16 21 C 0.03 1.16 5.35 22.89 0.12 1.28 16 22 O -0.32 -13.97 9.30 -74.31 -0.69 -14.66 16 23 C 0.59 25.32 3.66 113.37 0.41 25.74 16 24 F -0.17 -6.48 16.63 44.97 0.75 -5.73 16 25 F -0.14 -5.95 17.53 44.97 0.79 -5.16 16 26 F -0.15 -7.43 13.14 44.97 0.59 -6.84 16 27 H 0.24 5.56 7.80 -4.43 -0.03 5.52 16 28 H 0.09 3.18 8.12 -2.39 -0.02 3.16 16 29 H 0.12 3.76 4.27 -2.39 -0.01 3.75 16 30 H 0.26 15.12 8.32 -92.71 -0.77 14.35 16 31 H 0.16 4.60 4.06 -2.91 -0.01 4.59 16 32 H 0.20 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.19 1.90 8.06 -2.91 -0.02 1.87 16 Total: -1.00 -76.74 309.77 9.33 -67.41 By element: Atomic # 1 Polarization: 1.75 SS G_CDS: 1.20 Total: 2.96 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 5.15 Total: 23.53 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -1.37 Total: -74.06 kcal Atomic # 8 Polarization: -46.23 SS G_CDS: -0.58 Total: -46.81 kcal Atomic # 9 Polarization: -23.70 SS G_CDS: 2.88 Total: -20.82 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -76.74 9.33 -67.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270093598.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.506 kcal (2) G-P(sol) polarization free energy of solvation -76.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 9.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds