Wall clock time and date at job start Tue Mar 31 2020 17:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00222 * 2 1 4 4 H 1.07993 * 120.00128 * 203.04546 * 3 2 1 5 5 C 1.38811 * 119.99632 * 23.05157 * 3 2 1 6 6 N 1.31625 * 120.00217 * 12.92870 * 5 3 2 7 7 Si 1.86800 * 119.99905 * 192.92228 * 5 3 2 8 8 H 1.48507 * 109.46765 * 90.00374 * 7 5 3 9 9 H 1.48500 * 109.47270 * 210.00056 * 7 5 3 10 10 H 1.48493 * 109.47156 * 330.00284 * 7 5 3 11 11 C 1.46504 * 119.99961 * 180.02562 * 2 1 3 12 12 C 1.52994 * 109.47222 * 89.99131 * 11 2 1 13 13 N 1.46501 * 109.46851 * 179.97438 * 12 11 2 14 14 C 1.46501 * 120.00106 * 270.00236 * 13 12 11 15 15 C 1.34778 * 119.99973 * 90.00695 * 13 12 11 16 16 O 1.21527 * 119.99714 * 359.72178 * 15 13 12 17 17 C 1.47996 * 119.99772 * 180.02562 * 15 13 12 18 18 C 1.39968 * 120.94582 * 89.44456 * 17 15 13 19 19 Cl 1.73602 * 120.50759 * 359.97438 * 18 17 15 20 20 C 1.38295 * 118.98109 * 179.72770 * 18 17 15 21 21 N 1.31789 * 120.91406 * 0.55125 * 20 18 17 22 22 C 1.31786 * 122.09407 * 359.72213 * 21 20 18 23 23 C 1.38298 * 120.91573 * 359.97438 * 22 21 20 24 24 Cl 1.73601 * 120.50982 * 180.02562 * 23 22 21 25 25 H 1.09005 * 109.47098 * 275.11816 * 1 2 3 26 26 H 1.09002 * 109.47173 * 35.11596 * 1 2 3 27 27 H 1.08998 * 109.47130 * 155.11961 * 1 2 3 28 28 H 0.97001 * 119.99907 * 180.02562 * 6 5 3 29 29 H 1.09000 * 109.46918 * 329.99497 * 11 2 1 30 30 H 1.09001 * 109.46795 * 209.99877 * 11 2 1 31 31 H 1.09000 * 109.46876 * 60.00340 * 12 11 2 32 32 H 1.09001 * 109.47845 * 300.00103 * 12 11 2 33 33 H 1.09005 * 109.47069 * 270.00300 * 14 13 12 34 34 H 1.09004 * 109.47051 * 29.99857 * 14 13 12 35 35 H 1.08999 * 109.47375 * 150.00092 * 14 13 12 36 36 H 1.08009 * 119.54334 * 180.29646 * 20 18 17 37 37 H 1.08006 * 119.54254 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1650 1.2232 -0.3661 5 6 1.5388 2.3400 0.4707 6 7 0.4119 2.2596 1.1461 7 14 2.3160 4.0073 0.1459 8 1 1.7988 4.5535 -1.1346 9 1 1.9761 4.9362 1.2535 10 1 3.7909 3.8576 0.0604 11 6 2.1975 -1.2688 -0.0006 12 6 2.4523 -1.7099 -1.4432 13 7 3.1854 -2.9783 -1.4437 14 6 4.6504 -2.9778 -1.4439 15 6 2.5119 -4.1458 -1.4439 16 8 1.2967 -4.1463 -1.4387 17 6 3.2525 -5.4272 -1.4438 18 6 3.6224 -6.0446 -0.2434 19 17 3.2203 -5.3187 1.2814 20 6 4.3087 -7.2444 -0.2907 21 7 4.6232 -7.7995 -1.4438 22 6 4.2995 -7.2498 -2.5970 23 6 3.6074 -6.0533 -2.6444 24 17 3.1858 -5.3389 -4.1693 25 1 -0.3633 0.0917 1.0236 26 1 -0.3633 0.8406 -0.5912 27 1 -0.3633 -0.9323 -0.4324 28 1 -0.0152 3.0662 1.4747 29 1 1.6084 -2.0286 0.5130 30 1 3.1499 -1.1386 0.5133 31 1 3.0414 -0.9501 -1.9568 32 1 1.4999 -1.8401 -1.9571 33 1 5.0135 -2.9773 -2.4717 34 1 5.0134 -2.0877 -0.9300 35 1 5.0142 -3.8677 -0.9304 36 1 4.5943 -7.7311 0.6302 37 1 4.5778 -7.7408 -3.5178 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272098553.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:25:09 Heat of formation + Delta-G solvation = 5.247616 kcal Electronic energy + Delta-G solvation = -23828.956135 eV Core-core repulsion = 20079.796132 eV Total energy + Delta-G solvation = -3749.160003 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.02891 -40.51114 -38.07459 -37.91333 -37.77369 -36.53838 -34.13880 -33.28111 -32.25141 -30.33734 -28.04472 -27.77410 -26.53197 -24.89055 -24.70620 -22.55087 -21.05394 -19.03645 -18.70208 -18.49609 -17.96857 -17.69856 -16.96546 -16.43593 -16.14422 -15.79902 -15.75488 -15.51417 -15.23522 -14.68394 -14.34259 -14.16193 -13.99798 -13.67594 -13.57533 -13.36275 -13.09988 -13.04776 -12.81454 -12.79435 -12.78335 -12.46971 -12.24058 -12.15147 -11.92988 -11.69839 -11.62261 -10.99099 -10.80891 -10.69677 -10.16072 -9.95182 -8.79237 -7.82854 -5.34956 -0.64116 -0.53751 0.48182 0.85704 1.18189 1.47950 1.49952 1.58367 1.71065 2.17633 2.51534 2.96090 3.16154 3.31006 3.33421 3.46145 3.71680 3.81563 4.00341 4.14233 4.18437 4.34472 4.49721 4.61023 4.61797 4.76603 4.78413 4.86151 4.99946 5.05757 5.24153 5.41275 5.60158 5.65297 6.14119 6.29916 6.38409 6.81504 7.11566 7.81213 8.28859 9.20927 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.018937 B = 0.003320 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.213916 B = 8432.191815 C = 9041.622227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.615 5.615 3 C -0.265 4.265 4 H 0.081 0.919 5 C -0.054 4.054 6 N -0.942 5.942 7 Si 0.973 3.027 8 H -0.287 1.287 9 H -0.298 1.298 10 H -0.262 1.262 11 C 0.151 3.849 12 C 0.113 3.887 13 N -0.590 5.590 14 C 0.071 3.929 15 C 0.558 3.442 16 O -0.556 6.556 17 C -0.068 4.068 18 C -0.068 4.068 19 Cl -0.032 7.032 20 C 0.136 3.864 21 N -0.448 5.448 22 C 0.137 3.863 23 C -0.063 4.063 24 Cl -0.029 7.029 25 H 0.004 0.996 26 H 0.020 0.980 27 H 0.018 0.982 28 H 0.248 0.752 29 H 0.025 0.975 30 H 0.053 0.947 31 H 0.089 0.911 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.209 0.791 37 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.655 -21.519 -7.579 26.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.339 5.339 3 C -0.395 4.395 4 H 0.099 0.901 5 C -0.249 4.249 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.214 1.214 9 H -0.225 1.225 10 H -0.186 1.186 11 C 0.023 3.977 12 C -0.012 4.012 13 N -0.321 5.321 14 C -0.071 4.071 15 C 0.344 3.656 16 O -0.434 6.434 17 C -0.081 4.081 18 C -0.098 4.098 19 Cl -0.003 7.003 20 C -0.021 4.021 21 N -0.157 5.157 22 C -0.021 4.021 23 C -0.093 4.093 24 Cl 0.000 7.000 25 H 0.023 0.977 26 H 0.038 0.962 27 H 0.036 0.964 28 H 0.057 0.943 29 H 0.044 0.956 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.109 0.891 35 H 0.094 0.906 36 H 0.225 0.775 37 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 13.321 -22.010 -7.496 26.797 hybrid contribution -0.880 2.176 0.144 2.352 sum 12.440 -19.833 -7.352 24.540 Atomic orbital electron populations 1.20500 0.83080 0.95440 0.97559 1.44061 1.01941 1.01601 1.86273 1.19594 0.98786 0.86212 1.34877 0.90120 1.25890 0.98580 1.02207 0.98248 1.70266 1.21030 1.27704 1.39811 0.85173 0.78675 0.79349 0.76667 1.21362 1.22454 1.18627 1.20990 0.95688 0.86661 0.94345 1.22103 0.96547 0.83031 0.99534 1.47855 1.08541 1.04975 1.70762 1.22084 0.77016 1.04429 1.03551 1.18182 0.86774 0.83876 0.76739 1.90833 1.14554 1.87179 1.50824 1.20201 0.98372 0.96434 0.93052 1.22291 1.02668 0.97585 0.87209 1.98465 1.92276 1.82400 1.27163 1.23399 0.91306 0.88869 0.98563 1.68009 1.18202 1.31664 0.97796 1.23434 0.91141 0.88993 0.98524 1.22245 1.02437 0.97506 0.87094 1.98440 1.91803 1.82961 1.26839 0.97739 0.96151 0.96355 0.94284 0.95636 0.92866 0.89236 0.92454 0.90327 0.89102 0.90635 0.77467 0.77245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.56 8.98 127.77 1.15 10.70 16 2 N -0.61 -31.84 2.92 -726.94 -2.12 -33.97 16 3 C -0.27 -14.38 9.65 84.03 0.81 -13.57 16 4 H 0.08 4.09 7.86 -2.91 -0.02 4.07 16 5 C -0.05 -3.04 5.10 84.86 0.43 -2.61 16 6 N -0.94 -56.76 10.71 21.65 0.23 -56.52 16 7 Si 0.97 44.59 29.57 68.60 2.03 46.62 16 8 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 9 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 10 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 11 C 0.15 6.38 5.97 86.38 0.52 6.89 16 12 C 0.11 4.02 5.73 86.38 0.49 4.51 16 13 N -0.59 -17.05 2.87 -850.03 -2.44 -19.49 16 14 C 0.07 1.42 10.26 127.77 1.31 2.73 16 15 C 0.56 17.33 5.49 86.83 0.48 17.80 16 16 O -0.56 -22.31 16.69 -3.80 -0.06 -22.37 16 17 C -0.07 -1.60 3.97 -19.85 -0.08 -1.68 16 18 C -0.07 -1.35 5.93 22.70 0.13 -1.22 16 19 Cl -0.03 -0.74 28.17 -2.72 -0.08 -0.81 16 20 C 0.14 1.94 10.98 84.71 0.93 2.87 16 21 N -0.45 -6.48 10.33 -195.80 -2.02 -8.50 16 22 C 0.14 1.83 10.98 84.71 0.93 2.76 16 23 C -0.06 -1.18 6.38 22.71 0.14 -1.04 16 24 Cl -0.03 -0.58 28.17 -2.72 -0.08 -0.66 16 25 H 0.00 0.25 7.34 -2.38 -0.02 0.23 16 26 H 0.02 1.12 7.34 -2.39 -0.02 1.11 16 27 H 0.02 0.88 8.03 -2.39 -0.02 0.86 16 28 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 29 H 0.03 1.14 8.07 -2.39 -0.02 1.12 16 30 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 31 H 0.09 3.02 8.07 -2.39 -0.02 3.00 16 32 H 0.06 2.32 7.43 -2.39 -0.02 2.30 16 33 H 0.08 1.29 8.14 -2.38 -0.02 1.27 16 34 H 0.09 1.74 8.07 -2.39 -0.02 1.72 16 35 H 0.07 1.31 6.54 -2.39 -0.02 1.30 16 36 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 37 H 0.21 1.37 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -71.40 349.53 3.80 -67.60 By element: Atomic # 1 Polarization: -1.14 SS G_CDS: 1.10 Total: -0.04 kcal Atomic # 6 Polarization: 20.91 SS G_CDS: 7.25 Total: 28.16 kcal Atomic # 7 Polarization: -112.12 SS G_CDS: -6.36 Total: -118.48 kcal Atomic # 8 Polarization: -22.31 SS G_CDS: -0.06 Total: -22.37 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.15 Total: -1.47 kcal Total: -71.40 3.80 -67.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272098553.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.843 kcal (2) G-P(sol) polarization free energy of solvation -71.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds