Wall clock time and date at job start Tue Mar 31 2020 16:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47219 * 269.99896 * 3 2 1 5 5 H 1.48504 * 109.47193 * 30.00017 * 3 2 1 6 6 H 1.48506 * 109.47573 * 149.99549 * 3 2 1 7 7 C 1.38809 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00459 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05469 * 359.61500 * 9 7 2 11 11 C 1.53497 * 87.98132 * 153.14697 * 10 9 7 12 12 C 1.53004 * 114.20434 * 272.48102 * 11 10 9 13 13 C 1.52996 * 109.47296 * 159.00769 * 12 11 10 14 14 O 1.42894 * 109.47504 * 184.41262 * 13 12 11 15 15 N 1.46501 * 114.38831 * 139.67035 * 11 10 9 16 16 C 1.34776 * 119.99762 * 80.61882 * 15 11 10 17 17 O 1.21635 * 120.00441 * 354.92732 * 16 15 11 18 18 C 1.47252 * 119.99660 * 174.92513 * 16 15 11 19 19 C 1.35149 * 123.13602 * 180.02562 * 18 16 15 20 20 S 1.70933 * 108.86255 * 179.97438 * 19 18 16 21 21 C 1.70772 * 91.14538 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 124.72239 * 179.97438 * 21 20 19 23 23 N 1.28764 * 110.54835 * 359.76423 * 21 20 19 24 24 C 1.47069 * 136.05841 * 179.97438 * 9 7 2 25 25 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.46965 * 267.92406 * 10 9 7 27 27 H 1.08995 * 113.46917 * 38.36497 * 10 9 7 28 28 H 1.09003 * 109.47063 * 279.00556 * 12 11 10 29 29 H 1.08997 * 109.47432 * 39.00258 * 12 11 10 30 30 H 1.09011 * 109.46720 * 304.41001 * 13 12 11 31 31 H 1.09003 * 109.47629 * 64.40435 * 13 12 11 32 32 H 0.96696 * 114.00504 * 179.97438 * 14 13 12 33 33 H 0.96992 * 119.99830 * 260.62674 * 15 11 10 34 34 H 1.08002 * 125.56969 * 359.92068 * 19 18 16 35 35 H 1.08997 * 113.46407 * 321.63566 * 24 9 7 36 36 H 1.08996 * 113.46937 * 92.07413 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.0877 -2.7948 0.0069 11 6 0.3390 -4.0929 -0.6924 12 6 0.3899 -3.9958 -2.2185 13 6 1.2915 -5.1020 -2.7701 14 8 1.4216 -4.9493 -4.1849 15 7 -0.3489 -5.2936 -0.2113 16 6 -1.5872 -5.5848 -0.6566 17 8 -2.1704 -4.8051 -1.3856 18 6 -2.2340 -6.8470 -0.2607 19 6 -3.4719 -7.2028 -0.6700 20 16 -3.8592 -8.7265 0.0012 21 6 -2.3461 -8.8021 0.7894 22 17 -1.8188 -10.1165 1.7934 23 7 -1.6491 -7.7505 0.5316 24 6 1.6799 -3.8154 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 -0.4894 -2.9528 1.0078 27 1 -0.7250 -2.1596 -0.6082 28 1 -0.6155 -4.1107 -2.6236 29 1 0.7892 -3.0237 -2.5076 30 1 2.2752 -5.0344 -2.3054 31 1 0.8510 -6.0741 -2.5485 32 1 1.9814 -5.6178 -4.6029 33 1 0.0868 -5.8788 0.4279 34 1 -4.1123 -6.6194 -1.3149 35 1 2.5454 -4.0478 -0.6200 36 1 1.7494 -4.2455 0.9997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276094315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:23 Heat of formation + Delta-G solvation = 22.621166 kcal Electronic energy + Delta-G solvation = -23833.313961 eV Core-core repulsion = 20086.951038 eV Total energy + Delta-G solvation = -3746.362923 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -40.73430 -39.49807 -37.77244 -37.21290 -36.40801 -33.67739 -31.96485 -30.83045 -30.25307 -27.33181 -26.10676 -24.92980 -23.71519 -22.59014 -21.59076 -20.05851 -19.14466 -18.68391 -17.21703 -16.73989 -16.58656 -16.37693 -15.74815 -15.45316 -14.94818 -14.60027 -14.27319 -14.12595 -13.90667 -13.68426 -13.61931 -12.65804 -12.38929 -12.23148 -11.87818 -11.85506 -11.65889 -11.51484 -11.14970 -10.96417 -10.86211 -10.64174 -10.37836 -10.17396 -10.08361 -10.05548 -9.81677 -9.59466 -9.25343 -9.15821 -8.82834 -8.52253 -6.92506 -5.76323 -3.11325 0.07581 0.30845 1.09567 1.44085 1.67224 3.35367 3.38764 3.41771 3.46158 3.47660 4.06477 4.44904 4.48101 4.88136 4.89658 5.06085 5.35492 5.41851 5.50749 5.54703 5.63812 5.82850 5.92145 6.19544 6.35645 6.46258 6.54796 6.80233 6.86557 6.93827 7.22891 7.31283 7.57896 7.83237 7.87709 7.96620 8.42962 9.01902 9.68707 10.58521 11.40270 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.003048 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.266048 B = 9184.722021 C = 9573.962339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.004 4.004 3 Si 0.915 3.085 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.222 4.222 8 H 0.083 0.917 9 N -0.599 5.599 10 C 0.161 3.839 11 C 0.117 3.883 12 C -0.098 4.098 13 C 0.082 3.918 14 O -0.572 6.572 15 N -0.692 5.692 16 C 0.590 3.410 17 O -0.517 6.517 18 C 0.028 3.972 19 C -0.222 4.222 20 S 0.273 5.727 21 C 0.043 3.957 22 Cl 0.030 6.970 23 N -0.428 5.428 24 C 0.118 3.882 25 H 0.255 0.745 26 H 0.028 0.972 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.371 0.629 33 H 0.405 0.595 34 H 0.200 0.800 35 H 0.049 0.951 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.497 -23.182 -0.123 24.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.201 4.201 3 Si 0.745 3.255 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.206 1.206 7 C -0.349 4.349 8 H 0.101 0.899 9 N -0.325 5.325 10 C 0.034 3.966 11 C 0.031 3.969 12 C -0.136 4.136 13 C 0.004 3.996 14 O -0.377 6.377 15 N -0.343 5.343 16 C 0.372 3.628 17 O -0.393 6.393 18 C -0.107 4.107 19 C -0.364 4.364 20 S 0.525 5.475 21 C -0.261 4.261 22 Cl 0.057 6.943 23 N -0.147 5.147 24 C -0.009 4.009 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.099 0.901 28 H 0.105 0.895 29 H 0.112 0.888 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.216 0.784 33 H 0.240 0.760 34 H 0.217 0.783 35 H 0.067 0.933 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.462 -22.422 -0.239 23.633 hybrid contribution 1.585 0.684 0.457 1.786 sum -5.877 -21.739 0.218 22.520 Atomic orbital electron populations 1.69843 1.05018 1.25556 1.55558 1.24827 0.95687 0.97607 1.01991 0.86090 0.78512 0.83242 0.77694 1.21362 1.21607 1.20636 1.18862 0.90061 0.80909 1.45050 0.89886 1.45246 1.02602 0.98844 1.85816 1.22404 0.88950 0.88797 0.96471 1.22733 0.95047 0.85066 0.94056 1.21334 1.01111 0.99684 0.91473 1.22180 0.98886 0.98024 0.80491 1.86524 1.73262 1.56548 1.21319 1.45858 1.15763 1.27147 1.45494 1.16942 0.81791 0.83261 0.80832 1.90843 1.63533 1.47982 1.36953 1.20507 0.93244 0.96990 0.99944 1.26842 1.01059 1.01643 1.06852 1.82939 1.13779 1.12606 1.38181 1.27146 0.97602 0.96586 1.04759 1.98442 1.90353 1.40194 1.65276 1.66690 1.33862 1.00638 1.13503 1.22680 0.93736 0.87699 0.96767 0.93470 0.95446 0.90103 0.89452 0.88752 0.93703 0.94794 0.78369 0.76003 0.78279 0.93330 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.63 11.51 55.49 0.64 -26.99 16 2 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.22 -6.23 10.75 -15.06 -0.16 -6.39 16 8 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 9 N -0.60 -15.44 3.56 -184.75 -0.66 -16.09 16 10 C 0.16 3.96 6.78 -8.50 -0.06 3.90 16 11 C 0.12 2.30 0.77 -131.72 -0.10 2.20 16 12 C -0.10 -1.95 4.88 -26.73 -0.13 -2.08 16 13 C 0.08 1.33 6.88 37.16 0.26 1.58 16 14 O -0.57 -9.13 13.66 -35.23 -0.48 -9.61 16 15 N -0.69 -11.46 5.23 -48.55 -0.25 -11.71 16 16 C 0.59 9.91 7.52 -12.60 -0.09 9.82 16 17 O -0.52 -10.27 14.70 5.25 0.08 -10.19 16 18 C 0.03 0.38 6.70 -84.51 -0.57 -0.19 16 19 C -0.22 -2.32 10.61 29.63 0.31 -2.01 16 20 S 0.27 2.02 22.96 -107.50 -2.47 -0.45 16 21 C 0.04 0.43 7.98 51.48 0.41 0.84 16 22 Cl 0.03 0.25 29.33 -51.86 -1.52 -1.27 16 23 N -0.43 -5.37 10.14 -9.45 -0.10 -5.46 16 24 C 0.12 2.40 7.81 -8.52 -0.07 2.33 16 25 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.08 2.28 7.10 -51.93 -0.37 1.91 16 28 H 0.09 1.86 5.99 -51.93 -0.31 1.55 16 29 H 0.09 2.19 7.93 -51.93 -0.41 1.78 16 30 H 0.04 0.69 6.65 -51.92 -0.35 0.35 16 31 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.37 3.84 9.12 45.56 0.42 4.25 16 33 H 0.40 5.90 8.21 -40.82 -0.34 5.56 16 34 H 0.20 1.86 8.03 -52.49 -0.42 1.44 16 35 H 0.05 0.92 6.71 -51.93 -0.35 0.57 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 338.42 15.07 5.10 5.10 Total: -1.00 -34.17 338.42 -7.92 -42.09 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -2.94 Total: 7.49 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -0.29 Total: 9.80 kcal Atomic # 7 Polarization: -59.89 SS G_CDS: -0.37 Total: -60.26 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.40 Total: -19.81 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.47 Total: -0.45 kcal Atomic # 17 Polarization: 0.25 SS G_CDS: -1.52 Total: -1.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.17 -7.92 -42.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276094315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.711 kcal (2) G-P(sol) polarization free energy of solvation -34.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds