Wall clock time and date at job start Tue Mar 31 2020 16:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86797 * 120.00101 * 2 1 4 4 H 1.48494 * 109.47219 * 269.99896 * 3 2 1 5 5 H 1.48504 * 109.47193 * 30.00017 * 3 2 1 6 6 H 1.48506 * 109.47573 * 149.99549 * 3 2 1 7 7 C 1.38809 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00459 * 179.97438 * 7 2 1 9 9 N 1.36943 * 120.00005 * 0.02562 * 7 2 1 10 10 C 1.47066 * 136.05469 * 359.61500 * 9 7 2 11 11 C 1.53497 * 87.98132 * 153.14697 * 10 9 7 12 12 C 1.53004 * 114.20434 * 272.48102 * 11 10 9 13 13 C 1.52996 * 109.47296 * 159.00769 * 12 11 10 14 14 O 1.42894 * 109.47504 * 184.41262 * 13 12 11 15 15 N 1.46501 * 114.38831 * 139.67035 * 11 10 9 16 16 C 1.34776 * 119.99762 * 80.61882 * 15 11 10 17 17 O 1.21635 * 120.00441 * 354.92732 * 16 15 11 18 18 C 1.47252 * 119.99660 * 174.92513 * 16 15 11 19 19 C 1.35149 * 123.13602 * 180.02562 * 18 16 15 20 20 S 1.70933 * 108.86255 * 179.97438 * 19 18 16 21 21 C 1.70772 * 91.14538 * 359.97438 * 20 19 18 22 22 Cl 1.73599 * 124.72239 * 179.97438 * 21 20 19 23 23 N 1.28764 * 110.54835 * 359.76423 * 21 20 19 24 24 C 1.47069 * 136.05841 * 179.97438 * 9 7 2 25 25 H 0.97000 * 120.00231 * 0.02562 * 1 2 3 26 26 H 1.08999 * 113.46965 * 267.92406 * 10 9 7 27 27 H 1.08995 * 113.46917 * 38.36497 * 10 9 7 28 28 H 1.09003 * 109.47063 * 279.00556 * 12 11 10 29 29 H 1.08997 * 109.47432 * 39.00258 * 12 11 10 30 30 H 1.09011 * 109.46720 * 304.41001 * 13 12 11 31 31 H 1.09003 * 109.47629 * 64.40435 * 13 12 11 32 32 H 0.96696 * 114.00504 * 179.97438 * 14 13 12 33 33 H 0.96992 * 119.99830 * 260.62674 * 15 11 10 34 34 H 1.08002 * 125.56969 * 359.92068 * 19 18 16 35 35 H 1.08997 * 113.46407 * 321.63566 * 24 9 7 36 36 H 1.08996 * 113.46937 * 92.07413 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 -0.0877 -2.7948 0.0069 11 6 0.3390 -4.0929 -0.6924 12 6 0.3899 -3.9958 -2.2185 13 6 1.2915 -5.1020 -2.7701 14 8 1.4216 -4.9493 -4.1849 15 7 -0.3489 -5.2936 -0.2113 16 6 -1.5872 -5.5848 -0.6566 17 8 -2.1704 -4.8051 -1.3856 18 6 -2.2340 -6.8470 -0.2607 19 6 -3.4719 -7.2028 -0.6700 20 16 -3.8592 -8.7265 0.0012 21 6 -2.3461 -8.8021 0.7894 22 17 -1.8188 -10.1165 1.7934 23 7 -1.6491 -7.7505 0.5316 24 6 1.6799 -3.8154 0.0005 25 1 -0.4850 0.8400 -0.0004 26 1 -0.4894 -2.9528 1.0078 27 1 -0.7250 -2.1596 -0.6082 28 1 -0.6155 -4.1107 -2.6236 29 1 0.7892 -3.0237 -2.5076 30 1 2.2752 -5.0344 -2.3054 31 1 0.8510 -6.0741 -2.5485 32 1 1.9814 -5.6178 -4.6029 33 1 0.0868 -5.8788 0.4279 34 1 -4.1123 -6.6194 -1.3149 35 1 2.5454 -4.0478 -0.6200 36 1 1.7494 -4.2455 0.9997 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276094315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:20 Heat of formation + Delta-G solvation = -5.934493 kcal Electronic energy + Delta-G solvation = -23834.552227 eV Core-core repulsion = 20086.951038 eV Total energy + Delta-G solvation = -3747.601189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 2.58 seconds Orbital eigenvalues (eV) -41.94392 -40.82166 -39.16325 -37.95754 -37.72689 -35.34833 -33.86541 -32.08066 -31.49638 -29.20727 -27.19744 -26.72903 -25.18856 -23.85870 -23.31596 -21.09065 -20.36878 -20.09924 -18.78437 -18.44633 -17.72935 -17.35979 -17.07931 -16.82039 -16.63194 -15.98853 -15.71355 -15.38351 -15.29206 -15.01955 -14.94401 -14.49468 -13.85059 -13.31959 -13.22981 -13.08877 -12.99007 -12.89098 -12.78021 -12.73598 -12.54708 -12.34502 -12.04202 -11.81001 -11.43463 -11.21802 -11.08093 -10.92142 -10.82567 -10.67231 -10.19777 -9.92565 -9.00512 -7.92630 -5.29439 -0.72635 -0.38722 0.31224 0.66893 0.71277 1.44579 1.48159 1.56219 2.04667 2.18139 2.48003 3.02996 3.15346 3.28570 3.37289 3.67333 3.96033 4.02639 4.11733 4.24913 4.27277 4.43616 4.51670 4.55348 4.68246 4.87283 4.96354 5.12150 5.18727 5.24160 5.45567 5.62684 5.84824 6.00313 6.53433 6.84175 6.91868 7.12778 7.55488 8.51996 9.24390 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.017203 B = 0.003048 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.266048 B = 9184.722021 C = 9573.962339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.068 4.068 3 Si 0.984 3.016 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.262 1.262 7 C -0.229 4.229 8 H 0.095 0.905 9 N -0.627 5.627 10 C 0.158 3.842 11 C 0.148 3.852 12 C -0.092 4.092 13 C 0.094 3.906 14 O -0.592 6.592 15 N -0.685 5.685 16 C 0.589 3.411 17 O -0.557 6.557 18 C 0.001 3.999 19 C -0.228 4.228 20 S 0.388 5.612 21 C 0.022 3.978 22 Cl 0.042 6.958 23 N -0.451 5.451 24 C 0.126 3.874 25 H 0.248 0.752 26 H 0.013 0.987 27 H 0.033 0.967 28 H 0.068 0.932 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.397 0.603 33 H 0.417 0.583 34 H 0.207 0.793 35 H 0.071 0.929 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.927 -26.168 0.100 26.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.261 4.261 3 Si 0.812 3.188 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.187 1.187 7 C -0.357 4.357 8 H 0.113 0.887 9 N -0.353 5.353 10 C 0.030 3.970 11 C 0.060 3.940 12 C -0.131 4.131 13 C 0.017 3.983 14 O -0.400 6.400 15 N -0.336 5.336 16 C 0.374 3.626 17 O -0.436 6.436 18 C -0.135 4.135 19 C -0.371 4.371 20 S 0.641 5.359 21 C -0.282 4.282 22 Cl 0.069 6.931 23 N -0.170 5.170 24 C 0.000 4.000 25 H 0.057 0.943 26 H 0.030 0.970 27 H 0.051 0.949 28 H 0.086 0.914 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.247 0.753 33 H 0.255 0.745 34 H 0.224 0.776 35 H 0.089 0.911 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.852 -25.509 0.001 26.413 hybrid contribution 1.274 1.436 0.382 1.957 sum -5.578 -24.073 0.383 24.714 Atomic orbital electron populations 1.70075 1.06785 1.25714 1.57609 1.25750 0.96511 1.01276 1.02576 0.84997 0.77711 0.78564 0.77546 1.21229 1.22247 1.18677 1.19344 0.90868 0.82080 1.43371 0.88731 1.45505 1.03229 1.00615 1.86000 1.22276 0.88228 0.91067 0.95412 1.22049 0.94305 0.84096 0.93545 1.21169 1.00860 0.99278 0.91762 1.21968 0.98618 0.96842 0.80889 1.86461 1.74295 1.58204 1.21065 1.45616 1.16031 1.26088 1.45877 1.17399 0.81311 0.84137 0.79785 1.90825 1.64364 1.49712 1.38685 1.19907 0.94440 0.96422 1.02685 1.27169 1.00168 1.03639 1.06088 1.82609 1.10156 1.08550 1.34590 1.27470 0.99137 0.96425 1.05159 1.98449 1.90505 1.39161 1.64950 1.66596 1.35029 1.01311 1.14042 1.22802 0.94529 0.84465 0.98178 0.94321 0.96974 0.94870 0.91374 0.92815 0.92195 0.92891 0.75307 0.74475 0.77622 0.91103 0.92191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 73. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.62 11.51 21.65 0.25 -60.37 16 2 C -0.07 -4.00 5.50 84.86 0.47 -3.54 16 3 Si 0.98 46.94 29.55 68.60 2.03 48.97 16 4 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 5 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 6 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 7 C -0.23 -13.07 10.75 84.03 0.90 -12.17 16 8 H 0.10 5.03 7.83 -2.91 -0.02 5.01 16 9 N -0.63 -33.11 3.56 -738.43 -2.63 -35.74 16 10 C 0.16 8.20 6.78 83.18 0.56 8.76 16 11 C 0.15 5.91 0.77 4.07 0.00 5.91 16 12 C -0.09 -3.78 4.88 30.59 0.15 -3.63 16 13 C 0.09 2.93 6.88 71.98 0.50 3.43 16 14 O -0.59 -18.06 13.66 -148.98 -2.03 -20.10 16 15 N -0.68 -22.66 5.23 -425.77 -2.23 -24.88 16 16 C 0.59 20.06 7.52 86.61 0.65 20.71 16 17 O -0.56 -23.10 14.70 -4.14 -0.06 -23.16 16 18 C 0.00 0.02 6.70 40.53 0.27 0.29 16 19 C -0.23 -4.36 10.61 67.11 0.71 -3.64 16 20 S 0.39 4.41 22.96 -56.49 -1.30 3.11 16 21 C 0.02 0.38 7.98 130.69 1.04 1.42 16 22 Cl 0.04 0.60 29.33 -2.72 -0.08 0.52 16 23 N -0.45 -10.54 10.14 -183.80 -1.86 -12.41 16 24 C 0.13 5.00 7.81 83.17 0.65 5.65 16 25 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 26 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.03 2.02 7.10 -2.39 -0.02 2.00 16 28 H 0.07 3.05 5.99 -2.39 -0.01 3.04 16 29 H 0.05 2.62 7.93 -2.39 -0.02 2.61 16 30 H 0.06 1.69 6.65 -2.38 -0.02 1.68 16 31 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 32 H 0.40 7.24 9.12 -74.06 -0.68 6.57 16 33 H 0.42 11.74 8.21 -92.71 -0.76 10.98 16 34 H 0.21 3.57 8.03 -2.91 -0.02 3.55 16 35 H 0.07 2.53 6.71 -2.39 -0.02 2.51 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -78.98 338.42 -2.28 -81.26 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -0.27 Total: 19.61 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 5.91 Total: 23.19 kcal Atomic # 7 Polarization: -126.94 SS G_CDS: -6.47 Total: -133.41 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -2.10 Total: -43.26 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 2.03 Total: 48.97 kcal Atomic # 16 Polarization: 4.41 SS G_CDS: -1.30 Total: 3.11 kcal Atomic # 17 Polarization: 0.60 SS G_CDS: -0.08 Total: 0.52 kcal Total: -78.98 -2.28 -81.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276094315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.325 kcal (2) G-P(sol) polarization free energy of solvation -78.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.58 seconds