Wall clock time and date at job start Tue Mar 31 2020 16:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00102 * 2 1 4 4 H 1.48500 * 109.46782 * 274.41194 * 3 2 1 5 5 H 1.48502 * 109.46986 * 34.41198 * 3 2 1 6 6 H 1.48500 * 109.46924 * 154.41269 * 3 2 1 7 7 C 1.38814 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00016 * 4.77623 * 7 2 1 9 9 N 1.36937 * 119.99824 * 184.76798 * 7 2 1 10 10 C 1.46494 * 119.99989 * 184.99290 * 9 7 2 11 11 C 1.53002 * 109.47128 * 174.93675 * 10 9 7 12 12 H 1.09003 * 109.99992 * 54.69955 * 11 10 9 13 13 C 1.54326 * 109.88467 * 293.60373 * 11 10 9 14 14 C 1.55151 * 102.94478 * 218.39300 * 13 11 10 15 15 C 1.54689 * 101.68074 * 35.33144 * 14 13 11 16 16 N 1.47031 * 109.88505 * 175.79704 * 11 10 9 17 17 C 1.34769 * 125.64405 * 298.32141 * 16 11 10 18 18 O 1.21715 * 120.00524 * 1.87805 * 17 16 11 19 19 C 1.46541 * 120.00028 * 181.87588 * 17 16 11 20 20 C 1.37965 * 126.23006 * 172.42193 * 19 17 16 21 21 C 1.39782 * 107.13063 * 180.13641 * 20 19 17 22 22 Cl 1.73603 * 126.05916 * 179.89664 * 21 20 19 23 23 C 1.35722 * 107.87849 * 359.63100 * 21 20 19 24 24 Cl 1.73594 * 125.58400 * 180.24955 * 23 21 20 25 25 N 1.35660 * 108.82904 * 0.22963 * 23 21 20 26 26 H 0.97001 * 125.69627 * 180.02562 * 25 23 21 27 27 H 0.97002 * 119.99764 * 0.02562 * 1 2 3 28 28 H 0.97010 * 120.00031 * 4.98961 * 9 7 2 29 29 H 1.08996 * 109.47299 * 54.93861 * 10 9 7 30 30 H 1.09001 * 109.47392 * 294.93190 * 10 9 7 31 31 H 1.09005 * 110.71466 * 336.75359 * 13 11 10 32 32 H 1.08993 * 110.71982 * 99.84755 * 13 11 10 33 33 H 1.08998 * 111.00895 * 153.57417 * 14 13 11 34 34 H 1.09000 * 111.00098 * 277.42651 * 14 13 11 35 35 H 1.09003 * 110.39654 * 204.36729 * 15 14 13 36 36 H 1.09008 * 110.23505 * 82.11447 * 15 14 13 37 37 H 1.08004 * 126.42704 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4044 2.1002 -1.3960 5 1 1.4974 2.6240 0.7913 6 1 3.5913 1.4150 0.6047 7 6 2.0102 -1.2022 0.0005 8 1 1.4729 -2.1359 -0.0769 9 7 3.3760 -1.2042 0.0991 10 6 4.1164 -2.4636 -0.0102 11 6 5.6188 -2.1751 0.0072 12 1 5.8770 -1.5956 0.8936 13 6 6.0184 -1.3961 -1.2637 14 6 7.3958 -2.0099 -1.6289 15 6 7.1980 -3.4886 -1.2200 16 7 6.3708 -3.4385 -0.0008 17 6 6.3171 -4.3904 0.9517 18 8 5.5738 -4.2554 1.9060 19 6 7.1537 -5.5882 0.8384 20 6 7.3120 -6.5661 1.7988 21 6 8.1947 -7.5162 1.2774 22 17 8.7373 -8.9563 2.0808 23 6 8.5478 -7.1163 0.0294 24 17 9.6242 -7.9642 -1.0363 25 7 7.9214 -5.9455 -0.2488 26 1 8.0004 -5.4438 -1.0752 27 1 -0.4850 0.8401 -0.0004 28 1 3.8533 -0.3717 0.2413 29 1 3.8526 -2.9603 -0.9438 30 1 3.8608 -3.1094 0.8299 31 1 5.2967 -1.5656 -2.0628 32 1 6.1120 -0.3314 -1.0500 33 1 7.5923 -1.9210 -2.6973 34 1 8.1948 -1.5506 -1.0468 35 1 8.1596 -3.9557 -1.0071 36 1 6.6780 -4.0316 -2.0093 37 1 6.8439 -6.5911 2.7718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001277908768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:58 Heat of formation + Delta-G solvation = 32.223635 kcal Electronic energy + Delta-G solvation = -23533.545437 eV Core-core repulsion = 19785.555203 eV Total energy + Delta-G solvation = -3747.990235 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.00064 -39.93248 -37.64969 -37.22795 -36.78807 -34.81105 -32.35271 -31.58683 -31.42016 -29.77585 -28.89379 -25.64532 -24.16841 -22.13391 -22.02895 -21.59773 -20.82690 -20.17150 -18.32859 -17.45612 -16.99445 -16.56551 -15.70661 -15.32436 -14.90708 -14.48224 -14.41572 -14.23777 -14.02698 -13.76401 -13.51472 -13.24945 -13.07126 -12.88533 -12.50658 -12.30108 -12.22547 -11.87108 -11.75899 -11.52425 -11.32144 -11.21315 -10.96874 -10.80683 -10.65591 -10.22890 -10.08982 -9.61075 -9.41736 -8.88983 -8.86600 -8.58547 -7.22403 -5.76669 -3.12535 0.85646 1.02390 1.75430 1.85402 2.54393 2.92022 3.05997 3.34298 3.36787 3.44119 4.06987 4.17478 4.40805 4.56654 4.57957 4.66758 4.84909 5.02474 5.04984 5.23046 5.27004 5.47025 5.50117 5.59337 5.62248 5.74135 5.80188 5.86004 6.02170 6.13572 6.23829 6.49277 6.61884 6.82945 7.27036 7.92891 8.01956 8.41821 9.20992 9.92471 10.12518 11.41773 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.002728 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.194598 B =10260.156355 C =11031.310023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.888 3.112 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.241 4.241 8 H 0.089 0.911 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.129 3.871 12 H 0.081 0.919 13 C -0.125 4.125 14 C -0.130 4.130 15 C 0.083 3.917 16 N -0.609 5.609 17 C 0.601 3.399 18 O -0.501 6.501 19 C -0.006 4.006 20 C -0.088 4.088 21 C -0.096 4.096 22 Cl -0.029 7.029 23 C 0.091 3.909 24 Cl 0.002 6.998 25 N -0.527 5.527 26 H 0.428 0.572 27 H 0.259 0.741 28 H 0.362 0.638 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.857 -13.909 -4.062 28.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.191 4.191 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.371 4.371 8 H 0.107 0.893 9 N -0.399 5.399 10 C 0.021 3.979 11 C 0.026 3.974 12 H 0.099 0.901 13 C -0.163 4.163 14 C -0.168 4.168 15 C -0.040 4.040 16 N -0.344 5.344 17 C 0.388 3.612 18 O -0.374 6.374 19 C -0.119 4.119 20 C -0.114 4.114 21 C -0.131 4.131 22 Cl 0.000 7.000 23 C -0.053 4.053 24 Cl 0.030 6.970 25 N -0.134 5.134 26 H 0.275 0.725 27 H 0.070 0.930 28 H 0.195 0.805 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 24.325 -14.049 -3.678 28.330 hybrid contribution 0.830 1.137 -0.549 1.511 sum 25.155 -12.912 -4.227 28.589 Atomic orbital electron populations 1.69713 1.05129 1.25783 1.57470 1.24694 0.95233 0.97174 1.02048 0.86492 0.79037 0.85071 0.77557 1.21168 1.21720 1.20501 1.19025 0.80721 0.94762 1.42574 0.89320 1.42622 1.04501 1.03483 1.89286 1.20954 0.87137 0.90225 0.99604 1.21932 0.93450 0.83017 0.98997 0.90133 1.22736 0.95996 1.00109 0.97430 1.22737 0.98641 0.93194 1.02253 1.22567 0.94026 0.99682 0.87754 1.48400 1.44575 1.20109 1.21344 1.16426 0.81843 0.80521 0.82381 1.90959 1.38260 1.77041 1.31156 1.20490 1.02601 0.99785 0.89062 1.21171 0.98760 0.91195 1.00313 1.19624 1.05922 0.94602 0.92991 1.98353 1.88868 1.34346 1.78457 1.20628 1.00958 0.90505 0.93226 1.98425 1.60674 1.73791 1.64087 1.42799 1.35841 1.18158 1.16641 0.72522 0.93049 0.80498 0.95203 0.93950 0.89313 0.89664 0.89363 0.90368 0.91342 0.90499 0.81292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 2 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 3 Si 0.89 21.90 28.01 -169.99 -4.76 17.14 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.35 6.15 56.52 0.35 -6.00 16 7 C -0.24 -6.92 10.47 -15.06 -0.16 -7.08 16 8 H 0.09 2.76 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -17.94 5.18 -59.91 -0.31 -18.25 16 10 C 0.15 2.98 5.65 -4.04 -0.02 2.96 16 11 C 0.13 1.95 2.94 -66.94 -0.20 1.75 16 12 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 13 C -0.12 -1.49 6.19 -24.90 -0.15 -1.64 16 14 C -0.13 -1.02 7.07 -24.70 -0.17 -1.20 16 15 C 0.08 0.68 5.44 -2.65 -0.01 0.66 16 16 N -0.61 -7.76 3.07 -164.72 -0.51 -8.26 16 17 C 0.60 8.68 7.61 -12.92 -0.10 8.58 16 18 O -0.50 -9.31 15.80 5.18 0.08 -9.23 16 19 C -0.01 -0.06 6.84 -81.93 -0.56 -0.62 16 20 C -0.09 -1.00 10.65 -39.10 -0.42 -1.41 16 21 C -0.10 -0.99 6.66 -39.91 -0.27 -1.25 16 22 Cl -0.03 -0.27 29.12 -51.86 -1.51 -1.78 16 23 C 0.09 0.83 7.75 -16.76 -0.13 0.70 16 24 Cl 0.00 0.01 29.13 -51.86 -1.51 -1.50 16 25 N -0.53 -4.60 5.39 -6.51 -0.04 -4.63 16 26 H 0.43 2.72 5.23 -40.82 -0.21 2.50 16 27 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 28 H 0.36 8.27 5.32 -40.82 -0.22 8.05 16 29 H 0.03 0.60 8.04 -51.93 -0.42 0.19 16 30 H 0.04 0.97 6.67 -51.93 -0.35 0.62 16 31 H 0.09 1.15 7.78 -51.93 -0.40 0.75 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.41 5.56 -51.93 -0.29 0.12 16 36 H 0.08 0.54 8.10 -51.92 -0.42 0.12 16 37 H 0.17 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 336.48 15.07 5.07 5.07 Total: -1.00 -33.89 336.48 -9.03 -42.91 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.03 Total: 5.81 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -2.29 Total: 1.48 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: -0.08 Total: -59.90 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.08 Total: -9.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.76 Total: 17.14 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -3.02 Total: -3.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.89 -9.03 -42.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277908768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.137 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds