Wall clock time and date at job start Tue Mar 31 2020 16:34:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86806 * 120.00102 * 2 1 4 4 H 1.48500 * 109.46782 * 274.41194 * 3 2 1 5 5 H 1.48502 * 109.46986 * 34.41198 * 3 2 1 6 6 H 1.48500 * 109.46924 * 154.41269 * 3 2 1 7 7 C 1.38814 * 119.99675 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00016 * 4.77623 * 7 2 1 9 9 N 1.36937 * 119.99824 * 184.76798 * 7 2 1 10 10 C 1.46494 * 119.99989 * 184.99290 * 9 7 2 11 11 C 1.53002 * 109.47128 * 174.93675 * 10 9 7 12 12 H 1.09003 * 109.99992 * 54.69955 * 11 10 9 13 13 C 1.54326 * 109.88467 * 293.60373 * 11 10 9 14 14 C 1.55151 * 102.94478 * 218.39300 * 13 11 10 15 15 C 1.54689 * 101.68074 * 35.33144 * 14 13 11 16 16 N 1.47031 * 109.88505 * 175.79704 * 11 10 9 17 17 C 1.34769 * 125.64405 * 298.32141 * 16 11 10 18 18 O 1.21715 * 120.00524 * 1.87805 * 17 16 11 19 19 C 1.46541 * 120.00028 * 181.87588 * 17 16 11 20 20 C 1.37965 * 126.23006 * 172.42193 * 19 17 16 21 21 C 1.39782 * 107.13063 * 180.13641 * 20 19 17 22 22 Cl 1.73603 * 126.05916 * 179.89664 * 21 20 19 23 23 C 1.35722 * 107.87849 * 359.63100 * 21 20 19 24 24 Cl 1.73594 * 125.58400 * 180.24955 * 23 21 20 25 25 N 1.35660 * 108.82904 * 0.22963 * 23 21 20 26 26 H 0.97001 * 125.69627 * 180.02562 * 25 23 21 27 27 H 0.97002 * 119.99764 * 0.02562 * 1 2 3 28 28 H 0.97010 * 120.00031 * 4.98961 * 9 7 2 29 29 H 1.08996 * 109.47299 * 54.93861 * 10 9 7 30 30 H 1.09001 * 109.47392 * 294.93190 * 10 9 7 31 31 H 1.09005 * 110.71466 * 336.75359 * 13 11 10 32 32 H 1.08993 * 110.71982 * 99.84755 * 13 11 10 33 33 H 1.08998 * 111.00895 * 153.57417 * 14 13 11 34 34 H 1.09000 * 111.00098 * 277.42651 * 14 13 11 35 35 H 1.09003 * 110.39654 * 204.36729 * 15 14 13 36 36 H 1.09008 * 110.23505 * 82.11447 * 15 14 13 37 37 H 1.08004 * 126.42704 * 359.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4044 2.1002 -1.3960 5 1 1.4974 2.6240 0.7913 6 1 3.5913 1.4150 0.6047 7 6 2.0102 -1.2022 0.0005 8 1 1.4729 -2.1359 -0.0769 9 7 3.3760 -1.2042 0.0991 10 6 4.1164 -2.4636 -0.0102 11 6 5.6188 -2.1751 0.0072 12 1 5.8770 -1.5956 0.8936 13 6 6.0184 -1.3961 -1.2637 14 6 7.3958 -2.0099 -1.6289 15 6 7.1980 -3.4886 -1.2200 16 7 6.3708 -3.4385 -0.0008 17 6 6.3171 -4.3904 0.9517 18 8 5.5738 -4.2554 1.9060 19 6 7.1537 -5.5882 0.8384 20 6 7.3120 -6.5661 1.7988 21 6 8.1947 -7.5162 1.2774 22 17 8.7373 -8.9563 2.0808 23 6 8.5478 -7.1163 0.0294 24 17 9.6242 -7.9642 -1.0363 25 7 7.9214 -5.9455 -0.2488 26 1 8.0004 -5.4438 -1.0752 27 1 -0.4850 0.8401 -0.0004 28 1 3.8533 -0.3717 0.2413 29 1 3.8526 -2.9603 -0.9438 30 1 3.8608 -3.1094 0.8299 31 1 5.2967 -1.5656 -2.0628 32 1 6.1120 -0.3314 -1.0500 33 1 7.5923 -1.9210 -2.6973 34 1 8.1948 -1.5506 -1.0468 35 1 8.1596 -3.9557 -1.0071 36 1 6.6780 -4.0316 -2.0093 37 1 6.8439 -6.5911 2.7718 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277908768.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:34:57 Heat of formation + Delta-G solvation = 9.052012 kcal Electronic energy + Delta-G solvation = -23534.550234 eV Core-core repulsion = 19785.555203 eV Total energy + Delta-G solvation = -3748.995032 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.85202 -40.96043 -38.76710 -37.94076 -37.55316 -36.63767 -33.86369 -33.01811 -32.32951 -31.03963 -29.94827 -27.02449 -25.44938 -23.82775 -22.89088 -22.53589 -21.66995 -21.33592 -19.90514 -18.86784 -18.02078 -17.53851 -16.70694 -16.43494 -16.28795 -15.85062 -15.46601 -15.41476 -15.28583 -14.87565 -14.80016 -14.53708 -14.16978 -14.10165 -13.83790 -13.28557 -13.08776 -13.02438 -12.91111 -12.79436 -12.52875 -12.22422 -12.13269 -11.99840 -11.94244 -11.81297 -11.67097 -11.38289 -10.99168 -10.25509 -9.93229 -9.41724 -9.34682 -8.05543 -5.41435 -0.03175 0.26927 0.98792 1.01403 1.35855 1.42687 1.49673 1.57055 2.01355 2.13824 2.47200 3.21269 3.25017 3.42066 3.58839 3.70362 3.76077 3.90424 4.00672 4.15596 4.24755 4.29658 4.41580 4.47773 4.73521 4.76705 4.96856 4.98228 5.05475 5.06342 5.17422 5.28780 5.32632 5.70877 5.80374 6.16458 6.26332 6.85180 7.03695 7.75695 7.99785 9.16204 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023055 B = 0.002728 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.194598 B =10260.156355 C =11031.310023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.063 4.063 3 Si 0.966 3.034 4 H -0.270 1.270 5 H -0.296 1.296 6 H -0.248 1.248 7 C -0.242 4.242 8 H 0.045 0.955 9 N -0.748 5.748 10 C 0.152 3.848 11 C 0.134 3.866 12 H 0.069 0.931 13 C -0.124 4.124 14 C -0.114 4.114 15 C 0.074 3.926 16 N -0.608 5.608 17 C 0.597 3.403 18 O -0.557 6.557 19 C -0.017 4.017 20 C -0.093 4.093 21 C -0.109 4.109 22 Cl -0.023 7.023 23 C 0.106 3.894 24 Cl 0.025 6.975 25 N -0.510 5.510 26 H 0.440 0.560 27 H 0.260 0.740 28 H 0.370 0.630 29 H 0.027 0.973 30 H 0.007 0.993 31 H 0.078 0.922 32 H 0.091 0.909 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.736 -13.324 -5.956 32.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.792 3.208 4 H -0.196 1.196 5 H -0.223 1.223 6 H -0.172 1.172 7 C -0.373 4.373 8 H 0.063 0.937 9 N -0.396 5.396 10 C 0.025 3.975 11 C 0.031 3.969 12 H 0.087 0.913 13 C -0.162 4.162 14 C -0.151 4.151 15 C -0.048 4.048 16 N -0.341 5.341 17 C 0.386 3.614 18 O -0.435 6.435 19 C -0.131 4.131 20 C -0.120 4.120 21 C -0.144 4.144 22 Cl 0.005 6.995 23 C -0.040 4.040 24 Cl 0.053 6.947 25 N -0.118 5.118 26 H 0.289 0.711 27 H 0.069 0.931 28 H 0.205 0.795 29 H 0.045 0.955 30 H 0.025 0.975 31 H 0.097 0.903 32 H 0.110 0.890 33 H 0.139 0.861 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.112 0.888 37 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 28.280 -13.483 -5.629 31.831 hybrid contribution -0.401 0.770 0.033 0.869 sum 27.878 -12.713 -5.597 31.147 Atomic orbital electron populations 1.69918 1.07440 1.27000 1.59030 1.25637 0.96219 1.01720 1.01889 0.85250 0.78638 0.78606 0.78297 1.19576 1.22272 1.17218 1.18933 0.82884 0.93347 1.42106 0.93714 1.42487 1.02877 1.05166 1.89025 1.20944 0.90722 0.88141 0.97719 1.21714 0.89991 0.84548 1.00685 0.91303 1.22716 0.98383 1.00140 0.95002 1.22761 0.96132 0.91777 1.04478 1.22959 0.94736 1.01014 0.86084 1.48455 1.44354 1.18845 1.22410 1.16801 0.81407 0.81279 0.81865 1.90924 1.40718 1.78390 1.33514 1.19934 1.03667 0.99144 0.90356 1.21259 0.98856 0.91557 1.00342 1.19653 1.06252 0.94886 0.93614 1.98353 1.88746 1.33884 1.78485 1.20710 1.00118 0.90066 0.93057 1.98443 1.59761 1.73254 1.63220 1.42654 1.34850 1.17972 1.16339 0.71051 0.93116 0.79521 0.95541 0.97475 0.90337 0.89036 0.86130 0.89060 0.88559 0.88755 0.81825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.31 13.97 21.65 0.30 -64.01 16 2 C -0.06 -3.79 5.50 84.86 0.47 -3.32 16 3 Si 0.97 45.05 28.01 68.60 1.92 46.97 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 6 H -0.25 -10.16 6.15 99.48 0.61 -9.55 16 7 C -0.24 -14.42 10.47 84.03 0.88 -13.54 16 8 H 0.04 2.99 8.06 -2.91 -0.02 2.96 16 9 N -0.75 -36.22 5.18 -343.47 -1.78 -38.00 16 10 C 0.15 6.31 5.65 86.38 0.49 6.80 16 11 C 0.13 3.98 2.94 45.34 0.13 4.11 16 12 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 13 C -0.12 -2.63 6.19 31.78 0.20 -2.44 16 14 C -0.11 -1.27 7.07 31.91 0.23 -1.04 16 15 C 0.07 0.94 5.44 86.78 0.47 1.41 16 16 N -0.61 -14.83 3.07 -793.26 -2.43 -17.26 16 17 C 0.60 17.45 7.61 86.41 0.66 18.11 16 18 O -0.56 -21.99 15.80 -4.40 -0.07 -22.06 16 19 C -0.02 -0.38 6.84 40.30 0.28 -0.10 16 20 C -0.09 -2.09 10.65 22.58 0.24 -1.85 16 21 C -0.11 -2.10 6.66 22.06 0.15 -1.95 16 22 Cl -0.02 -0.41 29.12 -2.72 -0.08 -0.49 16 23 C 0.11 1.68 7.75 83.52 0.65 2.33 16 24 Cl 0.02 0.30 29.13 -2.72 -0.08 0.22 16 25 N -0.51 -7.63 5.39 -174.51 -0.94 -8.57 16 26 H 0.44 4.00 5.23 -92.71 -0.48 3.52 16 27 H 0.26 16.02 8.31 -92.71 -0.77 15.24 16 28 H 0.37 16.51 5.32 -92.70 -0.49 16.02 16 29 H 0.03 1.11 8.04 -2.39 -0.02 1.09 16 30 H 0.01 0.35 6.67 -2.39 -0.02 0.34 16 31 H 0.08 1.85 7.78 -2.38 -0.02 1.83 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.10 0.72 5.56 -2.39 -0.01 0.71 16 36 H 0.09 0.95 8.10 -2.38 -0.02 0.93 16 37 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 Total: -1.00 -78.68 336.48 1.74 -76.94 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.07 Total: 17.74 kcal Atomic # 6 Polarization: 3.70 SS G_CDS: 4.83 Total: 8.53 kcal Atomic # 7 Polarization: -122.99 SS G_CDS: -4.85 Total: -127.84 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.07 Total: -22.06 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.92 Total: 46.97 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -0.16 Total: -0.27 kcal Total: -78.68 1.74 -76.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277908768.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.995 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds