Wall clock time and date at job start Tue Mar 31 2020 17:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99963 * 2 1 4 4 H 1.08002 * 119.99897 * 322.03259 * 3 2 1 5 5 C 1.38816 * 120.00207 * 142.03756 * 3 2 1 6 6 N 1.31614 * 120.00235 * 157.02143 * 5 3 2 7 7 Si 1.86801 * 119.99701 * 337.01500 * 5 3 2 8 8 H 1.48500 * 109.47058 * 95.68322 * 7 5 3 9 9 H 1.48501 * 109.47006 * 215.68232 * 7 5 3 10 10 H 1.48498 * 109.47508 * 335.68580 * 7 5 3 11 11 C 1.46504 * 120.00314 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46944 * 89.99827 * 11 2 1 13 13 C 1.52999 * 109.46770 * 180.02562 * 12 11 2 14 14 N 1.46502 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99811 * 180.02562 * 14 13 12 16 16 O 1.21529 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.48023 * 119.99753 * 179.97438 * 15 14 13 18 18 N 1.32793 * 119.72376 * 0.02562 * 17 15 14 19 19 C 1.31431 * 121.67128 * 179.97438 * 18 17 15 20 20 C 1.38806 * 120.91597 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.32904 * 180.02562 * 20 19 18 22 22 C 1.38663 * 119.34516 * 0.02562 * 20 19 18 23 23 C 1.38739 * 118.46685 * 359.97438 * 22 20 19 24 24 Cl 1.73598 * 120.47414 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47263 * 265.64977 * 1 2 3 26 26 H 1.09002 * 109.46664 * 25.65325 * 1 2 3 27 27 H 1.09004 * 109.46835 * 145.65213 * 1 2 3 28 28 H 0.97001 * 119.99966 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46876 * 330.00352 * 11 2 1 30 30 H 1.08996 * 109.47372 * 210.00475 * 11 2 1 31 31 H 1.09001 * 109.46905 * 60.00543 * 12 11 2 32 32 H 1.08996 * 109.47615 * 300.00499 * 12 11 2 33 33 H 1.08994 * 109.47459 * 60.00221 * 13 12 11 34 34 H 1.09004 * 109.47172 * 300.00110 * 13 12 11 35 35 H 0.97000 * 120.00124 * 0.02562 * 14 13 12 36 36 H 1.07998 * 119.54583 * 180.27225 * 19 18 17 37 37 H 1.08000 * 120.76274 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3176 1.3132 0.7395 6 7 4.2044 2.2305 0.4165 7 14 3.6304 0.1825 2.1932 8 1 4.4680 -0.9637 1.7575 9 1 4.3368 0.9339 3.2617 10 1 2.3351 -0.3216 2.7160 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2171 -3.0363 -1.4411 14 7 3.4618 -3.4595 -2.8222 15 6 4.1236 -4.6076 -3.0679 16 8 4.5177 -5.2916 -2.1439 17 6 4.3703 -5.0355 -4.4633 18 7 3.9376 -4.2838 -5.4688 19 6 4.1360 -4.6267 -6.7219 20 6 4.8109 -5.7964 -7.0429 21 17 5.0650 -6.2344 -8.7034 22 6 5.2801 -6.6117 -6.0241 23 6 5.0561 -6.2243 -4.7109 24 17 5.6203 -7.2059 -3.3949 25 1 -0.3633 -0.0779 1.0247 26 1 -0.3633 0.9264 -0.4449 27 1 -0.3633 -0.8485 -0.5799 28 1 5.0203 2.3196 0.9335 29 1 1.6085 -2.0282 0.5147 30 1 3.1499 -1.1382 0.5144 31 1 3.0417 -0.9516 -1.9559 32 1 1.5002 -1.8415 -1.9556 33 1 2.6277 -3.7955 -0.9271 34 1 4.1695 -2.9061 -0.9272 35 1 3.1475 -2.9135 -3.5597 36 1 3.7731 -3.9872 -7.5129 37 1 5.8078 -7.5271 -6.2478 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316856302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:52 Heat of formation + Delta-G solvation = 20.339927 kcal Electronic energy + Delta-G solvation = -22759.909844 eV Core-core repulsion = 19011.404293 eV Total energy + Delta-G solvation = -3748.505551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.14437 -39.20193 -37.33582 -36.97943 -36.49093 -34.83123 -33.14731 -31.97345 -31.62046 -30.57814 -26.57708 -25.83566 -24.72316 -24.09493 -21.86621 -21.05573 -20.59706 -18.52296 -17.78220 -17.22160 -16.73520 -15.93140 -15.70393 -15.53404 -15.39954 -14.78441 -14.55777 -14.07671 -13.82325 -13.55722 -13.27646 -13.21725 -12.84296 -12.65523 -12.33293 -12.16525 -12.06681 -11.73958 -11.58919 -11.34198 -11.20252 -10.90606 -10.65258 -10.50263 -10.39416 -10.23195 -9.80237 -9.67268 -9.53246 -9.48220 -8.94213 -8.51256 -6.82660 -6.01003 -3.42152 -0.17315 0.31970 1.17342 1.68076 2.32142 2.90626 3.26361 3.32350 3.48011 3.53662 3.63384 3.94745 4.12307 4.32273 4.43191 4.52483 4.95512 4.99755 5.12065 5.34818 5.47997 5.52946 5.63666 5.83963 6.04171 6.12773 6.28032 6.33411 6.46099 6.61360 6.71196 6.76541 6.90180 6.94670 7.51285 8.04658 8.10066 8.36964 8.97919 9.70348 10.11664 11.14573 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002542 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.841411 B =11012.173347 C =11718.889148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.612 5.612 3 C -0.272 4.272 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.898 5.898 7 Si 0.876 3.124 8 H -0.283 1.283 9 H -0.301 1.301 10 H -0.270 1.270 11 C 0.143 3.857 12 C -0.146 4.146 13 C 0.117 3.883 14 N -0.700 5.700 15 C 0.559 3.441 16 O -0.512 6.512 17 C 0.098 3.902 18 N -0.426 5.426 19 C 0.118 3.882 20 C -0.063 4.063 21 Cl -0.035 7.035 22 C -0.068 4.068 23 C -0.031 4.031 24 Cl 0.001 6.999 25 H 0.006 0.994 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.263 0.737 29 H 0.041 0.959 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.411 0.589 36 H 0.181 0.819 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.033 -20.148 -17.595 26.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.336 5.336 3 C -0.400 4.400 4 H 0.096 0.904 5 C -0.164 4.164 6 N -0.539 5.539 7 Si 0.706 3.294 8 H -0.211 1.211 9 H -0.229 1.229 10 H -0.194 1.194 11 C 0.016 3.984 12 C -0.187 4.187 13 C -0.006 4.006 14 N -0.351 5.351 15 C 0.341 3.659 16 O -0.387 6.387 17 C -0.042 4.042 18 N -0.137 5.137 19 C -0.043 4.043 20 C -0.093 4.093 21 Cl -0.006 7.006 22 C -0.095 4.095 23 C -0.061 4.061 24 Cl 0.030 6.970 25 H 0.025 0.975 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.247 0.753 36 H 0.198 0.802 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 1.053 -19.856 -16.625 25.918 hybrid contribution 0.736 -1.178 0.057 1.390 sum 1.790 -21.034 -16.568 26.835 Atomic orbital electron populations 1.21083 0.84556 0.99031 0.97411 1.44041 1.00808 1.01974 1.86781 1.18784 1.06095 0.90840 1.24311 0.90438 1.25481 0.96814 0.96454 0.97687 1.69879 1.08454 1.36204 1.39392 0.86947 0.78041 0.80092 0.84354 1.21122 1.22863 1.19436 1.21036 0.96586 0.87854 0.92930 1.22400 0.99691 0.94481 1.02094 1.21585 1.00937 0.97095 0.81028 1.45974 1.55969 1.22661 1.10461 1.17620 0.79768 0.82300 0.86194 1.90899 1.50437 1.53624 1.43724 1.21384 0.96584 0.91290 0.94921 1.67904 1.16641 1.29868 0.99261 1.23012 0.94232 0.93194 0.93844 1.22277 1.01957 0.97442 0.87575 1.98422 1.95126 1.92476 1.14581 1.21506 0.98259 1.00473 0.89235 1.21929 0.99064 0.94209 0.90928 1.98461 1.86376 1.67337 1.44817 0.97548 0.93649 0.95466 0.92680 0.94087 0.92685 0.90387 0.92083 0.91426 0.91135 0.75338 0.80215 0.81998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.46 10.70 59.85 0.64 3.10 16 2 N -0.61 -14.46 2.47 -181.11 -0.45 -14.90 16 3 C -0.27 -7.55 9.88 -15.06 -0.15 -7.69 16 4 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 5 C 0.04 1.05 5.29 -17.43 -0.09 0.95 16 6 N -0.90 -27.25 13.97 55.49 0.78 -26.47 16 7 Si 0.88 22.25 25.10 -169.99 -4.27 17.98 16 8 H -0.28 -6.97 6.68 56.52 0.38 -6.59 16 9 H -0.30 -7.76 7.11 56.52 0.40 -7.36 16 10 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 11 C 0.14 2.99 4.53 -4.04 -0.02 2.97 16 12 C -0.15 -2.57 5.65 -26.73 -0.15 -2.72 16 13 C 0.12 1.84 5.67 -4.04 -0.02 1.82 16 14 N -0.70 -9.89 5.54 -61.19 -0.34 -10.23 16 15 C 0.56 8.14 7.80 -12.25 -0.10 8.05 16 16 O -0.51 -8.62 13.94 5.34 0.07 -8.54 16 17 C 0.10 1.18 6.75 -82.99 -0.56 0.62 16 18 N -0.43 -4.49 9.54 -9.75 -0.09 -4.59 16 19 C 0.12 0.92 10.98 -17.51 -0.19 0.73 16 20 C -0.06 -0.46 6.35 -39.21 -0.25 -0.70 16 21 Cl -0.03 -0.21 28.99 -51.86 -1.50 -1.71 16 22 C -0.07 -0.53 9.78 -39.24 -0.38 -0.91 16 23 C -0.03 -0.32 6.37 -38.94 -0.25 -0.57 16 24 Cl 0.00 0.01 26.03 -51.86 -1.35 -1.34 16 25 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 26 H 0.04 0.88 8.00 -51.93 -0.42 0.46 16 27 H 0.03 0.46 8.10 -51.93 -0.42 0.04 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 29 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 30 H 0.06 1.28 3.38 -51.93 -0.18 1.11 16 31 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.41 5.22 7.80 -40.82 -0.32 4.90 16 36 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 344.79 15.07 5.20 5.20 Total: -1.00 -31.82 344.79 -7.77 -39.59 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -4.29 Total: -0.61 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: -1.52 Total: 5.64 kcal Atomic # 7 Polarization: -56.09 SS G_CDS: -0.10 Total: -56.20 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.54 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -4.27 Total: 17.98 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -2.85 Total: -3.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.82 -7.77 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316856302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.931 kcal (2) G-P(sol) polarization free energy of solvation -31.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds