Wall clock time and date at job start Tue Mar 31 2020 17:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99963 * 2 1 4 4 H 1.08002 * 119.99897 * 322.03259 * 3 2 1 5 5 C 1.38816 * 120.00207 * 142.03756 * 3 2 1 6 6 N 1.31614 * 120.00235 * 157.02143 * 5 3 2 7 7 Si 1.86801 * 119.99701 * 337.01500 * 5 3 2 8 8 H 1.48500 * 109.47058 * 95.68322 * 7 5 3 9 9 H 1.48501 * 109.47006 * 215.68232 * 7 5 3 10 10 H 1.48498 * 109.47508 * 335.68580 * 7 5 3 11 11 C 1.46504 * 120.00314 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46944 * 89.99827 * 11 2 1 13 13 C 1.52999 * 109.46770 * 180.02562 * 12 11 2 14 14 N 1.46502 * 109.46943 * 180.02562 * 13 12 11 15 15 C 1.34778 * 119.99811 * 180.02562 * 14 13 12 16 16 O 1.21529 * 120.00376 * 359.97438 * 15 14 13 17 17 C 1.48023 * 119.99753 * 179.97438 * 15 14 13 18 18 N 1.32793 * 119.72376 * 0.02562 * 17 15 14 19 19 C 1.31431 * 121.67128 * 179.97438 * 18 17 15 20 20 C 1.38806 * 120.91597 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.32904 * 180.02562 * 20 19 18 22 22 C 1.38663 * 119.34516 * 0.02562 * 20 19 18 23 23 C 1.38739 * 118.46685 * 359.97438 * 22 20 19 24 24 Cl 1.73598 * 120.47414 * 179.97438 * 23 22 20 25 25 H 1.08997 * 109.47263 * 265.64977 * 1 2 3 26 26 H 1.09002 * 109.46664 * 25.65325 * 1 2 3 27 27 H 1.09004 * 109.46835 * 145.65213 * 1 2 3 28 28 H 0.97001 * 119.99966 * 179.97438 * 6 5 3 29 29 H 1.09001 * 109.46876 * 330.00352 * 11 2 1 30 30 H 1.08996 * 109.47372 * 210.00475 * 11 2 1 31 31 H 1.09001 * 109.46905 * 60.00543 * 12 11 2 32 32 H 1.08996 * 109.47615 * 300.00499 * 12 11 2 33 33 H 1.08994 * 109.47459 * 60.00221 * 13 12 11 34 34 H 1.09004 * 109.47172 * 300.00110 * 13 12 11 35 35 H 0.97000 * 120.00124 * 0.02562 * 14 13 12 36 36 H 1.07998 * 119.54583 * 180.27225 * 19 18 17 37 37 H 1.08000 * 120.76274 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7811 2.0223 -0.5754 5 6 3.3176 1.3132 0.7395 6 7 4.2044 2.2305 0.4165 7 14 3.6304 0.1825 2.1932 8 1 4.4680 -0.9637 1.7575 9 1 4.3368 0.9339 3.2617 10 1 2.3351 -0.3216 2.7160 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7110 -1.4417 13 6 3.2171 -3.0363 -1.4411 14 7 3.4618 -3.4595 -2.8222 15 6 4.1236 -4.6076 -3.0679 16 8 4.5177 -5.2916 -2.1439 17 6 4.3703 -5.0355 -4.4633 18 7 3.9376 -4.2838 -5.4688 19 6 4.1360 -4.6267 -6.7219 20 6 4.8109 -5.7964 -7.0429 21 17 5.0650 -6.2344 -8.7034 22 6 5.2801 -6.6117 -6.0241 23 6 5.0561 -6.2243 -4.7109 24 17 5.6203 -7.2059 -3.3949 25 1 -0.3633 -0.0779 1.0247 26 1 -0.3633 0.9264 -0.4449 27 1 -0.3633 -0.8485 -0.5799 28 1 5.0203 2.3196 0.9335 29 1 1.6085 -2.0282 0.5147 30 1 3.1499 -1.1382 0.5144 31 1 3.0417 -0.9516 -1.9559 32 1 1.5002 -1.8415 -1.9556 33 1 2.6277 -3.7955 -0.9271 34 1 4.1695 -2.9061 -0.9272 35 1 3.1475 -2.9135 -3.5597 36 1 3.7731 -3.9872 -7.5129 37 1 5.8078 -7.5271 -6.2478 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316856302.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:51 Heat of formation + Delta-G solvation = -0.915500 kcal Electronic energy + Delta-G solvation = -22760.831549 eV Core-core repulsion = 19011.404293 eV Total energy + Delta-G solvation = -3749.427256 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.95157 -40.24219 -38.21660 -37.91694 -37.73851 -36.20260 -34.01600 -33.70834 -32.74161 -31.88040 -28.17556 -27.39255 -25.71879 -24.92305 -23.37596 -22.49451 -21.95318 -19.47965 -18.76383 -18.47815 -17.97005 -17.40646 -16.84484 -16.75635 -16.44580 -16.04244 -15.68040 -15.32584 -15.11101 -14.89025 -14.63762 -14.46047 -14.10440 -14.01907 -13.47517 -13.37368 -13.07369 -12.95925 -12.73606 -12.69726 -12.66011 -12.44019 -12.28255 -12.15686 -11.74598 -11.42494 -11.38022 -10.90006 -10.68892 -10.62122 -10.32534 -10.02797 -8.76299 -8.21211 -5.58451 -0.93916 -0.34112 0.52911 0.95032 1.30833 1.40972 1.42428 1.51766 1.87984 2.38351 2.41493 2.83950 3.04042 3.29875 3.40363 3.43563 3.57305 3.74885 4.06019 4.14209 4.28781 4.40412 4.52982 4.53926 4.71499 4.76438 4.78268 4.91005 5.03391 5.15333 5.23373 5.28832 5.42460 5.94539 6.13734 6.16797 6.46344 6.98993 7.01336 7.63505 8.05657 8.98492 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.017563 B = 0.002542 C = 0.002389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1593.841411 B =11012.173347 C =11718.889148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.627 5.627 3 C -0.259 4.259 4 H 0.043 0.957 5 C -0.018 4.018 6 N -0.946 5.946 7 Si 0.937 3.063 8 H -0.274 1.274 9 H -0.309 1.309 10 H -0.259 1.259 11 C 0.134 3.866 12 C -0.128 4.128 13 C 0.127 3.873 14 N -0.697 5.697 15 C 0.556 3.444 16 O -0.540 6.540 17 C 0.076 3.924 18 N -0.439 5.439 19 C 0.122 3.878 20 C -0.052 4.052 21 Cl -0.015 7.015 22 C -0.059 4.059 23 C -0.038 4.038 24 Cl -0.014 7.014 25 H 0.014 0.986 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.263 0.737 29 H 0.070 0.930 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.417 0.583 36 H 0.210 0.790 37 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.170 -22.410 -19.146 29.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.351 5.351 3 C -0.389 4.389 4 H 0.061 0.939 5 C -0.214 4.214 6 N -0.590 5.590 7 Si 0.766 3.234 8 H -0.201 1.201 9 H -0.238 1.238 10 H -0.184 1.184 11 C 0.009 3.991 12 C -0.168 4.168 13 C 0.003 3.997 14 N -0.348 5.348 15 C 0.340 3.660 16 O -0.417 6.417 17 C -0.062 4.062 18 N -0.150 5.150 19 C -0.040 4.040 20 C -0.082 4.082 21 Cl 0.014 6.986 22 C -0.086 4.086 23 C -0.069 4.069 24 Cl 0.015 6.985 25 H 0.032 0.968 26 H 0.060 0.940 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.255 0.745 36 H 0.227 0.773 37 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.155 -22.149 -18.194 28.664 hybrid contribution 0.940 -0.479 0.310 1.099 sum 1.094 -22.628 -17.884 28.863 Atomic orbital electron populations 1.21212 0.82116 1.00476 0.98439 1.44209 1.02444 1.01420 1.87072 1.18689 1.05865 0.91644 1.22720 0.93913 1.26053 0.96973 0.98373 1.00050 1.69995 1.09287 1.38902 1.40801 0.85946 0.78268 0.78441 0.80730 1.20061 1.23759 1.18357 1.21149 0.95685 0.87390 0.94911 1.22107 1.00491 0.94445 0.99771 1.21327 0.99863 0.96432 0.82042 1.45851 1.56159 1.22894 1.09927 1.17994 0.78951 0.81782 0.87266 1.90874 1.51488 1.54387 1.44993 1.21008 0.98750 0.92497 0.93963 1.67867 1.17164 1.30024 0.99967 1.23516 0.93413 0.93621 0.93432 1.22326 1.00649 0.96843 0.88353 1.98441 1.94884 1.92282 1.13016 1.21752 0.97577 1.01200 0.88055 1.21992 0.99462 0.93834 0.91565 1.98452 1.86576 1.67611 1.45867 0.96804 0.94017 0.91942 0.92849 0.91167 0.95120 0.93036 0.89961 0.90268 0.93048 0.74535 0.77349 0.79551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.52 10.70 127.77 1.37 5.89 16 2 N -0.63 -28.83 2.47 -726.91 -1.79 -30.63 16 3 C -0.26 -14.58 9.88 84.03 0.83 -13.75 16 4 H 0.04 2.66 8.06 -2.91 -0.02 2.63 16 5 C -0.02 -1.03 5.29 84.86 0.45 -0.58 16 6 N -0.95 -59.10 13.97 21.65 0.30 -58.80 16 7 Si 0.94 46.46 25.10 68.60 1.72 48.18 16 8 H -0.27 -12.98 6.68 99.48 0.66 -12.31 16 9 H -0.31 -15.57 7.11 99.48 0.71 -14.86 16 10 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 11 C 0.13 5.39 4.53 86.38 0.39 5.79 16 12 C -0.13 -4.32 5.65 30.59 0.17 -4.15 16 13 C 0.13 3.90 5.67 86.38 0.49 4.39 16 14 N -0.70 -19.22 5.54 -465.80 -2.58 -21.80 16 15 C 0.56 16.00 7.80 86.84 0.68 16.68 16 16 O -0.54 -18.21 13.94 -3.81 -0.05 -18.26 16 17 C 0.08 1.76 6.75 41.89 0.28 2.04 16 18 N -0.44 -8.56 9.54 -184.76 -1.76 -10.32 16 19 C 0.12 1.58 10.98 84.89 0.93 2.52 16 20 C -0.05 -0.61 6.35 22.51 0.14 -0.46 16 21 Cl -0.02 -0.14 28.99 -2.72 -0.08 -0.22 16 22 C -0.06 -0.78 9.78 22.49 0.22 -0.56 16 23 C -0.04 -0.75 6.37 22.68 0.14 -0.61 16 24 Cl -0.01 -0.33 26.03 -2.72 -0.07 -0.40 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.04 1.55 8.00 -2.39 -0.02 1.53 16 27 H 0.06 1.88 8.10 -2.39 -0.02 1.86 16 28 H 0.26 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 30 H 0.03 1.39 3.38 -2.39 -0.01 1.39 16 31 H 0.05 2.01 8.14 -2.39 -0.02 2.00 16 32 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 34 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.42 10.25 7.80 -92.71 -0.72 9.53 16 36 H 0.21 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -70.12 344.79 2.13 -67.98 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.35 Total: 7.09 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 6.10 Total: 17.17 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -5.84 Total: -121.55 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: -0.05 Total: -18.26 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 1.72 Total: 48.18 kcal Atomic # 17 Polarization: -0.46 SS G_CDS: -0.15 Total: -0.61 kcal Total: -70.12 2.13 -67.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316856302.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.066 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds