Wall clock time and date at job start Tue Mar 31 2020 17:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.36935 * 120.00067 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00414 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99958 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47505 * 59.99960 * 10 8 6 12 12 H 1.48508 * 109.47042 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47186 * 299.99677 * 10 8 6 14 14 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 15 15 C 1.46497 * 119.99968 * 59.99779 * 14 2 1 16 16 C 1.34774 * 119.99744 * 239.99606 * 14 2 1 17 17 O 1.21526 * 120.00338 * 0.02562 * 16 14 2 18 18 C 1.48003 * 119.99752 * 180.02562 * 16 14 2 19 19 C 1.39972 * 120.94032 * 89.72388 * 18 16 14 20 20 Cl 1.73600 * 120.51401 * 359.97438 * 19 18 16 21 21 C 1.38295 * 118.97688 * 179.70969 * 19 18 16 22 22 N 1.31794 * 120.91212 * 0.57433 * 21 19 18 23 23 C 1.31787 * 122.10012 * 359.71615 * 22 21 19 24 24 C 1.38301 * 120.90962 * 359.97438 * 23 22 21 25 25 Cl 1.73603 * 120.50728 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 30 30 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 31 31 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 32 32 H 0.96992 * 120.00256 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47466 * 90.00240 * 15 14 2 34 34 H 1.09002 * 109.47260 * 210.00281 * 15 14 2 35 35 H 1.09000 * 109.47562 * 329.99730 * 15 14 2 36 36 H 1.08001 * 119.54721 * 180.31583 * 21 19 18 37 37 H 1.07991 * 119.54807 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4390 -2.2068 7 1 3.6466 -1.8442 -3.0516 8 6 5.5671 -1.5392 -2.1509 9 7 6.2216 -1.0458 -1.1210 10 14 6.4998 -2.3741 -3.5374 11 1 6.2433 -1.6539 -4.8105 12 1 7.9546 -2.3501 -3.2401 13 1 6.0431 -3.7814 -3.6641 14 7 2.0183 -0.6906 1.1962 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0865 1.1280 1.8912 18 6 3.2870 -0.7335 3.2914 19 6 4.5045 -1.4239 3.2766 20 17 5.4690 -1.4791 1.8343 21 6 4.9300 -2.0566 4.4304 22 7 4.2013 -2.0249 5.5281 23 6 3.0467 -1.3919 5.5841 24 6 2.5470 -0.7265 4.4795 25 17 1.0252 0.1045 4.5652 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7516 -0.1584 -2.1370 31 1 3.9824 -0.4623 -0.4320 32 1 7.1883 -1.1155 -1.0822 33 1 2.4156 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 5.8705 -2.5876 4.4307 37 1 2.4831 -1.3928 6.5053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319525816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:07 Heat of formation + Delta-G solvation = 10.722890 kcal Electronic energy + Delta-G solvation = -24830.997775 eV Core-core repulsion = 21082.075198 eV Total energy + Delta-G solvation = -3748.922577 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.78857 -39.30764 -36.93181 -36.46088 -36.19828 -34.09022 -32.91126 -31.48375 -31.08484 -30.02776 -26.81054 -25.72595 -25.04806 -23.71788 -22.63748 -21.36356 -19.23089 -17.79655 -17.35827 -17.03046 -16.71449 -16.39547 -15.30082 -14.81668 -14.68821 -14.58399 -14.53819 -13.67835 -13.59696 -13.23838 -12.99742 -12.57260 -12.47763 -12.30844 -12.29936 -12.05222 -11.95023 -11.61486 -11.58849 -11.50893 -10.85707 -10.80369 -10.68606 -10.50161 -10.21968 -10.06487 -9.71624 -9.70459 -9.44960 -8.91390 -8.87374 -8.37161 -6.90452 -5.75141 -3.03111 0.54194 0.63633 1.65264 2.40069 2.65498 3.05206 3.30614 3.42894 3.48253 3.48519 4.15216 4.25438 4.50665 4.58955 4.68744 4.93714 5.09889 5.25623 5.32723 5.35610 5.51931 5.54556 5.59062 5.65457 5.91423 6.02900 6.05007 6.07592 6.16288 6.34817 6.42988 6.68571 6.88237 7.46651 7.52122 7.68812 8.27271 8.42869 9.55329 10.13343 10.50546 11.46225 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.005408 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.251399 B = 5176.719255 C = 6635.872776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.235 4.235 7 H 0.067 0.933 8 C -0.009 4.009 9 N -0.926 5.926 10 Si 0.904 3.096 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.288 1.288 14 N -0.580 5.580 15 C 0.078 3.922 16 C 0.570 3.430 17 O -0.513 6.513 18 C -0.058 4.058 19 C -0.077 4.077 20 Cl 0.057 6.943 21 C 0.111 3.889 22 N -0.450 5.450 23 C 0.106 3.894 24 C -0.059 4.059 25 Cl -0.037 7.037 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.059 0.941 29 H 0.022 0.978 30 H 0.030 0.970 31 H 0.389 0.611 32 H 0.253 0.747 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.176 0.824 37 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.453 -2.426 12.933 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.014 3.986 5 N -0.373 5.373 6 C -0.366 4.366 7 H 0.085 0.915 8 C -0.205 4.205 9 N -0.575 5.575 10 Si 0.735 3.265 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.215 1.215 14 N -0.312 5.312 15 C -0.065 4.065 16 C 0.354 3.646 17 O -0.388 6.388 18 C -0.070 4.070 19 C -0.107 4.107 20 Cl 0.086 6.914 21 C -0.046 4.046 22 N -0.158 5.158 23 C -0.051 4.051 24 C -0.089 4.089 25 Cl -0.008 7.008 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.078 0.922 29 H 0.040 0.960 30 H 0.047 0.953 31 H 0.224 0.776 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.193 0.807 37 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -10.003 -2.240 13.258 16.759 hybrid contribution 0.393 0.008 -1.362 1.418 sum -9.611 -2.232 11.896 15.455 Atomic orbital electron populations 1.22064 0.94861 1.02196 1.02272 1.21486 0.93478 0.98517 0.84196 0.88023 1.21015 0.87351 0.96826 0.93384 1.42335 0.99600 1.70072 1.25303 1.19152 0.89436 1.29052 0.98996 0.91477 1.24644 0.96282 1.01637 0.97961 1.69578 1.06946 1.50854 1.30077 0.86324 0.79044 0.79180 0.81914 1.21475 1.21801 1.21520 1.47515 1.49454 1.12222 1.21960 1.21763 1.01948 0.82048 1.00747 1.17667 0.78614 0.86205 0.82065 1.90825 1.56639 1.15812 1.75484 1.20282 0.94289 0.97484 0.94974 1.22899 0.94251 0.98400 0.95192 1.98711 1.67840 1.96186 1.28618 1.22958 0.99570 0.95996 0.86117 1.67766 1.05036 1.16189 1.26839 1.22766 0.92474 0.92914 0.96989 1.22104 0.90895 1.00587 0.95299 1.98403 1.27629 1.76488 1.98281 0.92503 0.91147 0.92221 0.96037 0.95250 0.77567 0.93731 0.91231 0.92380 0.90535 0.80659 0.81012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.17 37.16 0.34 -1.59 16 2 C 0.13 2.12 2.80 -67.93 -0.19 1.93 16 3 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 4 C 0.14 2.79 5.55 -4.04 -0.02 2.77 16 5 N -0.73 -18.00 5.43 -59.91 -0.33 -18.33 16 6 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 7 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 8 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 9 N -0.93 -26.29 11.92 55.49 0.66 -25.63 16 10 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 11 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 N -0.58 -9.65 2.24 -174.99 -0.39 -10.04 16 15 C 0.08 1.09 9.42 59.85 0.56 1.65 16 16 C 0.57 10.51 5.20 -12.26 -0.06 10.45 16 17 O -0.51 -11.29 16.43 5.34 0.09 -11.20 16 18 C -0.06 -0.93 3.95 -104.59 -0.41 -1.34 16 19 C -0.08 -1.23 6.38 -38.91 -0.25 -1.48 16 20 Cl 0.06 1.12 26.79 -51.86 -1.39 -0.27 16 21 C 0.11 1.47 10.98 -17.55 -0.19 1.28 16 22 N -0.45 -5.66 10.33 -13.24 -0.14 -5.79 16 23 C 0.11 1.21 10.98 -17.55 -0.19 1.02 16 24 C -0.06 -0.78 5.97 -38.91 -0.23 -1.01 16 25 Cl -0.04 -0.45 28.17 -51.86 -1.46 -1.91 16 26 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.39 10.19 6.82 -40.82 -0.28 9.91 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.72 6.56 -51.93 -0.34 0.38 16 35 H 0.08 0.88 6.43 -51.93 -0.33 0.55 16 36 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 37 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 LS Contribution 344.11 15.07 5.19 5.19 Total: -1.00 -31.51 344.11 -7.84 -39.35 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.15 Total: 4.83 kcal Atomic # 6 Polarization: 7.70 SS G_CDS: -0.90 Total: 6.80 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -0.19 Total: -59.80 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -2.85 Total: -2.18 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.51 -7.84 -39.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319525816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.072 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.349 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds