Wall clock time and date at job start Tue Mar 31 2020 17:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.52997 * 109.47060 * 239.99831 * 2 1 3 5 5 N 1.46500 * 109.47520 * 185.00200 * 4 2 1 6 6 C 1.36935 * 120.00067 * 179.97438 * 5 4 2 7 7 H 1.07995 * 120.00414 * 0.02562 * 6 5 4 8 8 C 1.38818 * 119.99870 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99958 * 0.02562 * 8 6 5 10 10 Si 1.86794 * 119.99988 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47505 * 59.99960 * 10 8 6 12 12 H 1.48508 * 109.47042 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47186 * 299.99677 * 10 8 6 14 14 N 1.46500 * 109.47023 * 120.00071 * 2 1 3 15 15 C 1.46497 * 119.99968 * 59.99779 * 14 2 1 16 16 C 1.34774 * 119.99744 * 239.99606 * 14 2 1 17 17 O 1.21526 * 120.00338 * 0.02562 * 16 14 2 18 18 C 1.48003 * 119.99752 * 180.02562 * 16 14 2 19 19 C 1.39972 * 120.94032 * 89.72388 * 18 16 14 20 20 Cl 1.73600 * 120.51401 * 359.97438 * 19 18 16 21 21 C 1.38295 * 118.97688 * 179.70969 * 19 18 16 22 22 N 1.31794 * 120.91212 * 0.57433 * 21 19 18 23 23 C 1.31787 * 122.10012 * 359.71615 * 22 21 19 24 24 C 1.38301 * 120.90962 * 359.97438 * 23 22 21 25 25 Cl 1.73603 * 120.50728 * 180.02562 * 24 23 22 26 26 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 27 27 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 28 28 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47346 * 305.00346 * 4 2 1 30 30 H 1.09002 * 109.47196 * 65.00121 * 4 2 1 31 31 H 0.96995 * 119.99638 * 359.97438 * 5 4 2 32 32 H 0.96992 * 120.00256 * 180.02562 * 9 8 6 33 33 H 1.08998 * 109.47466 * 90.00240 * 15 14 2 34 34 H 1.09002 * 109.47260 * 210.00281 * 15 14 2 35 35 H 1.09000 * 109.47562 * 329.99730 * 15 14 2 36 36 H 1.08001 * 119.54721 * 180.31583 * 21 19 18 37 37 H 1.07991 * 119.54807 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4390 -2.2068 7 1 3.6466 -1.8442 -3.0516 8 6 5.5671 -1.5392 -2.1509 9 7 6.2216 -1.0458 -1.1210 10 14 6.4998 -2.3741 -3.5374 11 1 6.2433 -1.6539 -4.8105 12 1 7.9546 -2.3501 -3.2401 13 1 6.0431 -3.7814 -3.6641 14 7 2.0183 -0.6906 1.1962 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0356 2.0833 17 8 3.0865 1.1280 1.8912 18 6 3.2870 -0.7335 3.2914 19 6 4.5045 -1.4239 3.2766 20 17 5.4690 -1.4791 1.8343 21 6 4.9300 -2.0566 4.4304 22 7 4.2013 -2.0249 5.5281 23 6 3.0467 -1.3919 5.5841 24 6 2.5470 -0.7265 4.4795 25 17 1.0252 0.1045 4.5652 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.6053 -1.7198 -1.2952 30 1 1.7516 -0.1584 -2.1370 31 1 3.9824 -0.4623 -0.4320 32 1 7.1883 -1.1155 -1.0822 33 1 2.4156 -2.7377 0.9717 34 1 1.6237 -2.2852 2.5002 35 1 0.6903 -2.3002 0.9847 36 1 5.8705 -2.5876 4.4307 37 1 2.4831 -1.3928 6.5053 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319525816.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:07 Heat of formation + Delta-G solvation = -9.369094 kcal Electronic energy + Delta-G solvation = -24831.869029 eV Core-core repulsion = 21082.075198 eV Total energy + Delta-G solvation = -3749.793831 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.97634 -40.57562 -37.97862 -37.90728 -37.51978 -35.84202 -34.26031 -33.01106 -32.14496 -31.62515 -28.02617 -27.33544 -26.30482 -24.78762 -24.40111 -22.71179 -20.57659 -19.08840 -19.01178 -18.39823 -17.97810 -17.60794 -16.75641 -16.27149 -16.17077 -15.74115 -15.63291 -15.30951 -15.06961 -14.92365 -14.27200 -13.93776 -13.74819 -13.54924 -13.45872 -13.29304 -13.17085 -13.01442 -12.83670 -12.74427 -12.63519 -12.54576 -12.16366 -11.97997 -11.76663 -11.69769 -11.53957 -10.89486 -10.85867 -10.68586 -10.03627 -9.73142 -8.89289 -7.83077 -5.11673 -0.56367 -0.45369 0.60729 1.15623 1.27808 1.48346 1.49803 1.55318 1.80422 2.23900 2.59570 3.05184 3.20508 3.42828 3.47869 3.56174 3.81546 3.90236 4.09845 4.14126 4.19593 4.32554 4.47407 4.53597 4.58480 4.77471 4.81239 4.90473 4.96408 5.05348 5.13754 5.30231 5.50666 5.57432 6.19585 6.34312 6.43063 6.90742 7.43623 8.19281 8.45464 9.36439 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014266 B = 0.005408 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.251399 B = 5176.719255 C = 6635.872776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.129 3.871 3 H 0.071 0.929 4 C 0.141 3.859 5 N -0.742 5.742 6 C -0.243 4.243 7 H 0.071 0.929 8 C -0.061 4.061 9 N -0.944 5.944 10 Si 0.962 3.038 11 H -0.286 1.286 12 H -0.300 1.300 13 H -0.281 1.281 14 N -0.577 5.577 15 C 0.078 3.922 16 C 0.567 3.433 17 O -0.562 6.562 18 C -0.072 4.072 19 C -0.094 4.094 20 Cl 0.013 6.987 21 C 0.123 3.877 22 N -0.448 5.448 23 C 0.127 3.873 24 C -0.061 4.061 25 Cl -0.024 7.024 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.037 0.963 30 H 0.031 0.969 31 H 0.380 0.620 32 H 0.245 0.755 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.197 0.803 37 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.425 -3.640 14.286 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.089 0.911 4 C 0.013 3.987 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.255 4.255 9 N -0.594 5.594 10 Si 0.793 3.207 11 H -0.213 1.213 12 H -0.226 1.226 13 H -0.207 1.207 14 N -0.307 5.307 15 C -0.064 4.064 16 C 0.353 3.647 17 O -0.440 6.440 18 C -0.085 4.085 19 C -0.124 4.124 20 Cl 0.043 6.957 21 C -0.034 4.034 22 N -0.157 5.157 23 C -0.030 4.030 24 C -0.091 4.091 25 Cl 0.005 6.995 26 H 0.082 0.918 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.213 0.787 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.214 0.786 37 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges -12.029 -3.490 14.599 19.235 hybrid contribution 0.893 0.397 -1.690 1.952 sum -11.136 -3.093 12.909 17.327 Atomic orbital electron populations 1.21990 0.90857 1.03894 1.03394 1.21421 0.96368 0.96422 0.83233 0.91093 1.21198 0.84747 0.97822 0.94917 1.42533 1.01721 1.69849 1.24505 1.19455 0.89885 1.28687 0.99500 0.91124 1.25331 0.97217 1.02890 1.00013 1.69765 1.06336 1.51928 1.31343 0.85397 0.77288 0.78533 0.79500 1.21316 1.22627 1.20742 1.47635 1.48654 1.13116 1.21295 1.21898 1.02585 0.79965 1.01990 1.18045 0.78036 0.85779 0.82863 1.90788 1.58431 1.17989 1.76836 1.20226 0.94979 0.98148 0.95148 1.22880 0.94318 1.00647 0.94559 1.98692 1.69012 1.96629 1.31402 1.23238 1.00140 0.94847 0.85163 1.67929 1.05421 1.16369 1.25959 1.23432 0.91721 0.90385 0.97502 1.22207 0.91336 1.00853 0.94669 1.98409 1.26608 1.76275 1.98187 0.91757 0.89709 0.90141 0.94545 0.95074 0.78670 0.94649 0.93488 0.90734 0.87576 0.78641 0.76983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.17 71.98 0.66 -2.55 16 2 C 0.13 4.28 2.80 44.99 0.13 4.41 16 3 H 0.07 2.82 6.90 -2.39 -0.02 2.80 16 4 C 0.14 5.45 5.55 86.38 0.48 5.93 16 5 N -0.74 -37.35 5.43 -343.45 -1.87 -39.22 16 6 C -0.24 -13.31 9.99 84.04 0.84 -12.47 16 7 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 8 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 9 N -0.94 -55.13 11.92 21.65 0.26 -54.87 16 10 Si 0.96 45.90 29.55 68.60 2.03 47.93 16 11 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 13 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 14 N -0.58 -18.99 2.24 -825.84 -1.85 -20.84 16 15 C 0.08 2.06 9.42 127.77 1.20 3.26 16 16 C 0.57 21.15 5.20 86.83 0.45 21.60 16 17 O -0.56 -25.71 16.43 -3.80 -0.06 -25.77 16 18 C -0.07 -2.30 3.95 -19.85 -0.08 -2.38 16 19 C -0.09 -2.99 6.38 22.70 0.14 -2.85 16 20 Cl 0.01 0.54 26.79 -2.72 -0.07 0.47 16 21 C 0.12 3.08 10.98 84.71 0.93 4.01 16 22 N -0.45 -10.01 10.33 -195.81 -2.02 -12.04 16 23 C 0.13 2.48 10.98 84.71 0.93 3.41 16 24 C -0.06 -1.49 5.97 22.71 0.14 -1.35 16 25 Cl -0.02 -0.52 28.17 -2.72 -0.08 -0.60 16 26 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.08 1.48 6.66 -2.39 -0.02 1.47 16 29 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.38 20.55 6.82 -92.71 -0.63 19.92 16 32 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.72 6.56 -2.39 -0.02 1.70 16 35 H 0.11 2.14 6.43 -2.39 -0.02 2.12 16 36 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 37 H 0.21 2.39 8.06 -2.92 -0.02 2.36 16 Total: -1.00 -70.38 344.11 3.11 -67.27 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.49 Total: 19.59 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.29 Total: 18.08 kcal Atomic # 7 Polarization: -121.48 SS G_CDS: -5.48 Total: -126.97 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 17 Polarization: 0.02 SS G_CDS: -0.15 Total: -0.13 kcal Total: -70.38 3.11 -67.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319525816.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.903 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds