Wall clock time and date at job start Tue Mar 31 2020 17:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46816 * 119.99992 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.99982 * 4 2 1 6 6 C 1.36939 * 120.00064 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99975 * 0.02562 * 6 5 4 8 8 C 1.38806 * 120.00058 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00224 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00097 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47010 * 59.99716 * 10 8 6 12 12 H 1.48499 * 109.47504 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46992 * 300.00156 * 10 8 6 14 14 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 15 15 C 1.46499 * 120.00225 * 300.00126 * 14 2 1 16 16 C 1.34780 * 119.99546 * 120.00689 * 14 2 1 17 17 O 1.21532 * 120.00423 * 359.97438 * 16 14 2 18 18 C 1.47997 * 119.99481 * 180.02562 * 16 14 2 19 19 C 1.39984 * 120.94152 * 89.72409 * 18 16 14 20 20 Cl 1.73604 * 120.50833 * 359.97438 * 19 18 16 21 21 C 1.38289 * 118.97734 * 179.70846 * 19 18 16 22 22 N 1.31793 * 120.91399 * 0.56933 * 21 19 18 23 23 C 1.31787 * 122.09625 * 359.72053 * 22 21 19 24 24 C 1.38295 * 120.91587 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 120.51129 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 27 27 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 28 28 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46813 * 294.99541 * 4 2 1 30 30 H 1.08996 * 109.47336 * 54.99775 * 4 2 1 31 31 H 0.96998 * 120.00024 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00304 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47391 * 270.00005 * 15 14 2 34 34 H 1.09001 * 109.46813 * 150.00061 * 15 14 2 35 35 H 1.09004 * 109.47041 * 30.00189 * 15 14 2 36 36 H 1.07997 * 119.54338 * 180.31478 * 21 19 18 37 37 H 1.07999 * 119.54298 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4380 2.2074 7 1 3.6467 -1.8432 3.0522 8 6 5.5671 -1.5381 2.1516 9 7 6.2217 -1.0448 1.1217 10 14 6.4999 -2.3730 3.5381 11 1 6.0431 -3.7803 3.6648 12 1 7.9546 -2.3490 3.2409 13 1 6.2434 -1.6528 4.8111 14 7 2.0183 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4279 16 6 2.7933 -0.0357 -2.0832 17 8 3.0866 1.1279 -1.8912 18 6 3.2862 -0.7334 -3.2918 19 6 2.5428 -0.7304 -4.4780 20 17 1.0177 0.0949 -4.5603 21 6 3.0448 -1.3902 -5.5848 22 7 4.1988 -2.0242 -5.5295 23 6 4.9277 -2.0573 -4.4320 24 6 4.5061 -1.4195 -3.2796 25 17 5.4749 -1.4692 -1.8400 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7516 -0.1582 2.1370 30 1 1.6053 -1.7198 1.2953 31 1 3.9823 -0.4629 0.4317 32 1 7.1883 -1.1151 1.0825 33 1 2.4157 -2.7378 -0.9715 34 1 1.6238 -2.2853 -2.5001 35 1 0.6904 -2.3003 -0.9845 36 1 2.4813 -1.3894 -6.5062 37 1 5.8677 -2.5890 -4.4329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319525817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:12 Heat of formation + Delta-G solvation = 10.728498 kcal Electronic energy + Delta-G solvation = -24829.775466 eV Core-core repulsion = 21080.853132 eV Total energy + Delta-G solvation = -3748.922334 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.78939 -39.30748 -36.93275 -36.46104 -36.20007 -34.08985 -32.91192 -31.48353 -31.08659 -30.02736 -26.81042 -25.72582 -25.04910 -23.71894 -22.63734 -21.36370 -19.23123 -17.79686 -17.35873 -17.03076 -16.71553 -16.39569 -15.30081 -14.81618 -14.68757 -14.58635 -14.53976 -13.67804 -13.59720 -13.23789 -12.99732 -12.57287 -12.48059 -12.30841 -12.29881 -12.05162 -11.94996 -11.61722 -11.58953 -11.50817 -10.85709 -10.80284 -10.68789 -10.50185 -10.21988 -10.06499 -9.71819 -9.70462 -9.45001 -8.91555 -8.87371 -8.37157 -6.90398 -5.75063 -3.03087 0.54083 0.63502 1.65159 2.39823 2.65410 3.05169 3.30513 3.42923 3.48287 3.48567 4.15127 4.25377 4.50558 4.58973 4.68604 4.93594 5.09869 5.25629 5.32644 5.35604 5.51920 5.54514 5.59124 5.65425 5.91396 6.02835 6.04970 6.07563 6.16295 6.34830 6.42993 6.68610 6.88237 7.46538 7.52079 7.68828 8.27216 8.42912 9.55400 10.13383 10.50567 11.46273 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.005407 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.450062 B = 5176.891895 C = 6637.076782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.126 3.874 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.235 4.235 7 H 0.067 0.933 8 C -0.009 4.009 9 N -0.926 5.926 10 Si 0.904 3.096 11 H -0.288 1.288 12 H -0.292 1.292 13 H -0.288 1.288 14 N -0.580 5.580 15 C 0.078 3.922 16 C 0.570 3.430 17 O -0.513 6.513 18 C -0.058 4.058 19 C -0.059 4.059 20 Cl -0.037 7.037 21 C 0.106 3.894 22 N -0.450 5.450 23 C 0.112 3.888 24 C -0.077 4.077 25 Cl 0.056 6.944 26 H 0.070 0.930 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.022 0.978 31 H 0.389 0.611 32 H 0.253 0.747 33 H 0.069 0.931 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.173 0.827 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.455 -2.426 -12.946 16.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.023 3.977 3 H 0.120 0.880 4 C 0.014 3.986 5 N -0.373 5.373 6 C -0.366 4.366 7 H 0.085 0.915 8 C -0.205 4.205 9 N -0.575 5.575 10 Si 0.735 3.265 11 H -0.215 1.215 12 H -0.218 1.218 13 H -0.215 1.215 14 N -0.312 5.312 15 C -0.065 4.065 16 C 0.354 3.646 17 O -0.388 6.388 18 C -0.070 4.070 19 C -0.089 4.089 20 Cl -0.008 7.008 21 C -0.051 4.051 22 N -0.158 5.158 23 C -0.046 4.046 24 C -0.107 4.107 25 Cl 0.086 6.914 26 H 0.089 0.911 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.048 0.952 30 H 0.040 0.960 31 H 0.224 0.776 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.190 0.810 37 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -10.006 -2.239 -13.271 16.770 hybrid contribution 0.393 0.006 1.364 1.419 sum -9.612 -2.233 -11.907 15.465 Atomic orbital electron populations 1.22065 0.94862 1.02195 1.02271 1.21487 0.93477 0.98517 0.84198 0.88022 1.21016 0.87349 0.96823 0.93384 1.42337 0.99600 1.70143 1.25237 1.19151 0.89431 1.29085 0.98976 0.91477 1.24640 0.96280 1.01629 0.97956 1.69580 1.06944 1.50840 1.30086 0.86326 0.79049 0.79185 0.81923 1.21520 1.21800 1.21473 1.47517 1.49444 1.12222 1.21968 1.21766 1.01949 0.82045 1.00748 1.17668 0.78612 0.86206 0.82066 1.90827 1.56630 1.15803 1.75499 1.20284 0.94220 0.97517 0.95004 1.22104 0.90822 1.00653 0.95312 1.98403 1.27334 1.76762 1.98300 1.22766 0.92463 0.92943 0.96969 1.67768 1.05055 1.16155 1.26849 1.22957 0.99571 0.95976 0.86134 1.22894 0.94215 0.98421 0.95192 1.98710 1.67590 1.96204 1.28879 0.91146 0.92505 0.92221 0.95246 0.96040 0.77565 0.93736 0.91233 0.92378 0.90531 0.81009 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 9.17 37.16 0.34 -1.59 16 2 C 0.13 2.12 2.80 -67.93 -0.19 1.93 16 3 H 0.10 1.96 6.90 -51.93 -0.36 1.60 16 4 C 0.14 2.80 5.56 -4.04 -0.02 2.77 16 5 N -0.73 -18.01 5.43 -59.91 -0.33 -18.33 16 6 C -0.24 -6.37 9.99 -15.06 -0.15 -6.52 16 7 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 8 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 9 N -0.93 -26.30 11.94 55.49 0.66 -25.63 16 10 Si 0.90 22.03 29.55 -169.99 -5.02 17.00 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 12 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 13 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 14 N -0.58 -9.65 2.24 -174.99 -0.39 -10.04 16 15 C 0.08 1.09 9.42 59.85 0.56 1.65 16 16 C 0.57 10.51 5.20 -12.26 -0.06 10.45 16 17 O -0.51 -11.29 16.43 5.34 0.09 -11.20 16 18 C -0.06 -0.93 3.96 -104.59 -0.41 -1.34 16 19 C -0.06 -0.78 5.95 -38.91 -0.23 -1.01 16 20 Cl -0.04 -0.45 28.17 -51.86 -1.46 -1.91 16 21 C 0.11 1.21 10.98 -17.55 -0.19 1.02 16 22 N -0.45 -5.65 10.33 -13.24 -0.14 -5.79 16 23 C 0.11 1.47 10.98 -17.55 -0.19 1.28 16 24 C -0.08 -1.23 6.38 -38.91 -0.25 -1.48 16 25 Cl 0.06 1.11 26.83 -51.86 -1.39 -0.28 16 26 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.02 0.41 7.84 -51.93 -0.41 0.00 16 31 H 0.39 10.19 6.83 -40.82 -0.28 9.91 16 32 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 33 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.06 0.72 6.55 -51.93 -0.34 0.38 16 35 H 0.08 0.88 6.43 -51.93 -0.33 0.55 16 36 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.18 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 344.16 15.07 5.19 5.19 Total: -1.00 -31.52 344.16 -7.84 -39.36 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.15 Total: 4.83 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.90 Total: 6.81 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.19 Total: -59.80 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.00 kcal Atomic # 17 Polarization: 0.67 SS G_CDS: -2.85 Total: -2.19 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.52 -7.84 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319525817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.088 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds