Wall clock time and date at job start Tue Mar 31 2020 17:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47255 * 2 1 4 4 C 1.53006 * 109.46816 * 119.99992 * 2 1 3 5 5 N 1.46499 * 109.47021 * 174.99982 * 4 2 1 6 6 C 1.36939 * 120.00064 * 179.97438 * 5 4 2 7 7 H 1.08001 * 119.99975 * 0.02562 * 6 5 4 8 8 C 1.38806 * 120.00058 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00224 * 0.02562 * 8 6 5 10 10 Si 1.86802 * 120.00097 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47010 * 59.99716 * 10 8 6 12 12 H 1.48499 * 109.47504 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46992 * 300.00156 * 10 8 6 14 14 N 1.46499 * 109.47083 * 239.99470 * 2 1 3 15 15 C 1.46499 * 120.00225 * 300.00126 * 14 2 1 16 16 C 1.34780 * 119.99546 * 120.00689 * 14 2 1 17 17 O 1.21532 * 120.00423 * 359.97438 * 16 14 2 18 18 C 1.47997 * 119.99481 * 180.02562 * 16 14 2 19 19 C 1.39984 * 120.94152 * 89.72409 * 18 16 14 20 20 Cl 1.73604 * 120.50833 * 359.97438 * 19 18 16 21 21 C 1.38289 * 118.97734 * 179.70846 * 19 18 16 22 22 N 1.31793 * 120.91399 * 0.56933 * 21 19 18 23 23 C 1.31787 * 122.09625 * 359.72053 * 22 21 19 24 24 C 1.38295 * 120.91587 * 359.97438 * 23 22 21 25 25 Cl 1.73597 * 120.51129 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47233 * 300.00485 * 1 2 3 27 27 H 1.09001 * 109.46541 * 60.00107 * 1 2 3 28 28 H 1.08996 * 109.47255 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46813 * 294.99541 * 4 2 1 30 30 H 1.08996 * 109.47336 * 54.99775 * 4 2 1 31 31 H 0.96998 * 120.00024 * 359.97438 * 5 4 2 32 32 H 0.97001 * 120.00304 * 180.02562 * 9 8 6 33 33 H 1.09002 * 109.47391 * 270.00005 * 15 14 2 34 34 H 1.09001 * 109.46813 * 150.00061 * 15 14 2 35 35 H 1.09004 * 109.47041 * 30.00189 * 15 14 2 36 36 H 1.07997 * 119.54338 * 180.31478 * 21 19 18 37 37 H 1.07999 * 119.54298 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2493 5 7 3.5000 -0.8264 1.1907 6 6 4.1838 -1.4380 2.2074 7 1 3.6467 -1.8432 3.0522 8 6 5.5671 -1.5381 2.1516 9 7 6.2217 -1.0448 1.1217 10 14 6.4999 -2.3730 3.5381 11 1 6.0431 -3.7803 3.6648 12 1 7.9546 -2.3490 3.2409 13 1 6.2434 -1.6528 4.8111 14 7 2.0183 -0.6907 -1.1961 15 6 1.6644 -2.0933 -1.4279 16 6 2.7933 -0.0357 -2.0832 17 8 3.0866 1.1279 -1.8912 18 6 3.2862 -0.7334 -3.2918 19 6 2.5428 -0.7304 -4.4780 20 17 1.0177 0.0949 -4.5603 21 6 3.0448 -1.3902 -5.5848 22 7 4.1988 -2.0242 -5.5295 23 6 4.9277 -2.0573 -4.4320 24 6 4.5061 -1.4195 -3.2796 25 17 5.4749 -1.4692 -1.8400 26 1 -0.3634 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.7516 -0.1582 2.1370 30 1 1.6053 -1.7198 1.2953 31 1 3.9823 -0.4629 0.4317 32 1 7.1883 -1.1151 1.0825 33 1 2.4157 -2.7378 -0.9715 34 1 1.6238 -2.2853 -2.5001 35 1 0.6904 -2.3003 -0.9845 36 1 2.4813 -1.3894 -6.5062 37 1 5.8677 -2.5890 -4.4329 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319525817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:11 Heat of formation + Delta-G solvation = -9.376376 kcal Electronic energy + Delta-G solvation = -24830.647279 eV Core-core repulsion = 21080.853132 eV Total energy + Delta-G solvation = -3749.794147 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.97657 -40.57544 -37.97801 -37.90814 -37.52132 -35.84201 -34.26080 -33.01106 -32.14607 -31.62503 -28.02617 -27.33553 -26.30580 -24.78812 -24.40131 -22.71188 -20.57691 -19.08776 -19.01214 -18.39921 -17.97858 -17.60839 -16.75645 -16.27119 -16.17088 -15.74182 -15.63417 -15.30964 -15.06977 -14.92391 -14.27155 -13.93807 -13.74837 -13.55156 -13.45925 -13.29184 -13.17055 -13.01435 -12.83803 -12.74445 -12.63579 -12.54558 -12.16334 -11.98118 -11.76752 -11.69808 -11.53977 -10.89596 -10.85910 -10.68625 -10.03732 -9.73147 -8.89293 -7.83065 -5.11712 -0.56448 -0.45418 0.60683 1.15440 1.27740 1.48338 1.49805 1.55335 1.80396 2.23843 2.59543 3.05139 3.20484 3.42775 3.47907 3.56079 3.81536 3.90166 4.09815 4.14111 4.19554 4.32544 4.47380 4.53555 4.58437 4.77449 4.81201 4.90442 4.96383 5.05296 5.13759 5.30219 5.50648 5.57388 6.19538 6.34301 6.43009 6.90694 7.43637 8.19274 8.45433 9.36429 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.005407 C = 0.004218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.450062 B = 5176.891895 C = 6637.076782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.129 3.871 3 H 0.071 0.929 4 C 0.141 3.859 5 N -0.742 5.742 6 C -0.244 4.244 7 H 0.071 0.929 8 C -0.061 4.061 9 N -0.944 5.944 10 Si 0.962 3.038 11 H -0.281 1.281 12 H -0.300 1.300 13 H -0.286 1.286 14 N -0.577 5.577 15 C 0.078 3.922 16 C 0.566 3.434 17 O -0.562 6.562 18 C -0.072 4.072 19 C -0.061 4.061 20 Cl -0.024 7.024 21 C 0.127 3.873 22 N -0.448 5.448 23 C 0.123 3.877 24 C -0.094 4.094 25 Cl 0.013 6.987 26 H 0.084 0.916 27 H 0.063 0.937 28 H 0.080 0.920 29 H 0.031 0.969 30 H 0.037 0.963 31 H 0.380 0.620 32 H 0.245 0.755 33 H 0.046 0.954 34 H 0.074 0.926 35 H 0.106 0.894 36 H 0.214 0.786 37 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.428 -3.642 -14.296 19.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.026 3.974 3 H 0.089 0.911 4 C 0.013 3.987 5 N -0.386 5.386 6 C -0.375 4.375 7 H 0.089 0.911 8 C -0.254 4.254 9 N -0.594 5.594 10 Si 0.793 3.207 11 H -0.207 1.207 12 H -0.226 1.226 13 H -0.213 1.213 14 N -0.307 5.307 15 C -0.064 4.064 16 C 0.353 3.647 17 O -0.440 6.440 18 C -0.085 4.085 19 C -0.091 4.091 20 Cl 0.005 6.995 21 C -0.030 4.030 22 N -0.157 5.157 23 C -0.034 4.034 24 C -0.124 4.124 25 Cl 0.042 6.958 26 H 0.103 0.897 27 H 0.082 0.918 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.055 0.945 31 H 0.213 0.787 32 H 0.053 0.947 33 H 0.065 0.935 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.230 0.770 37 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -12.032 -3.492 -14.610 19.246 hybrid contribution 0.894 0.396 1.691 1.953 sum -11.138 -3.096 -12.919 17.336 Atomic orbital electron populations 1.21991 0.90856 1.03894 1.03393 1.21422 0.96369 0.96420 0.83234 0.91094 1.21199 0.84744 0.97820 0.94918 1.42535 1.01722 1.69921 1.24440 1.19454 0.89882 1.28722 0.99482 0.91125 1.25328 0.97216 1.02887 1.00011 1.69767 1.06335 1.51913 1.31352 0.85397 0.77289 0.78534 0.79500 1.20740 1.22624 1.21314 1.47637 1.48645 1.13116 1.21303 1.21900 1.02585 0.79961 1.01990 1.18047 0.78032 0.85779 0.82866 1.90789 1.58421 1.17982 1.76851 1.20228 0.94910 0.98188 0.95174 1.22206 0.91266 1.00911 0.94682 1.98409 1.26304 1.76551 1.98208 1.23431 0.91712 0.90412 0.97487 1.67931 1.05436 1.16337 1.25967 1.23236 1.00142 0.94824 0.85176 1.22877 0.94268 1.00671 0.94575 1.98691 1.68769 1.96647 1.31659 0.89708 0.91758 0.90141 0.95072 0.94546 0.78669 0.94652 0.93491 0.90733 0.87573 0.76983 0.78637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 9.17 71.98 0.66 -2.55 16 2 C 0.13 4.28 2.80 44.99 0.13 4.41 16 3 H 0.07 2.82 6.90 -2.39 -0.02 2.80 16 4 C 0.14 5.45 5.56 86.38 0.48 5.93 16 5 N -0.74 -37.37 5.43 -343.45 -1.87 -39.24 16 6 C -0.24 -13.32 9.99 84.03 0.84 -12.48 16 7 H 0.07 3.72 7.83 -2.91 -0.02 3.70 16 8 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 9 N -0.94 -55.14 11.94 21.65 0.26 -54.88 16 10 Si 0.96 45.90 29.55 68.60 2.03 47.93 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 13 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 14 N -0.58 -18.99 2.24 -825.81 -1.85 -20.85 16 15 C 0.08 2.06 9.42 127.77 1.20 3.26 16 16 C 0.57 21.15 5.20 86.83 0.45 21.60 16 17 O -0.56 -25.71 16.43 -3.82 -0.06 -25.77 16 18 C -0.07 -2.30 3.96 -19.85 -0.08 -2.38 16 19 C -0.06 -1.48 5.95 22.71 0.14 -1.35 16 20 Cl -0.02 -0.52 28.17 -2.72 -0.08 -0.60 16 21 C 0.13 2.48 10.98 84.71 0.93 3.41 16 22 N -0.45 -10.01 10.33 -195.81 -2.02 -12.03 16 23 C 0.12 3.09 10.98 84.71 0.93 4.02 16 24 C -0.09 -2.99 6.38 22.70 0.14 -2.84 16 25 Cl 0.01 0.53 26.83 -2.72 -0.07 0.46 16 26 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.08 1.48 6.66 -2.39 -0.02 1.47 16 29 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 1.32 7.84 -2.39 -0.02 1.30 16 31 H 0.38 20.56 6.83 -92.71 -0.63 19.92 16 32 H 0.24 14.21 8.31 -92.71 -0.77 13.44 16 33 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.07 1.72 6.55 -2.39 -0.02 1.70 16 35 H 0.11 2.14 6.43 -2.38 -0.02 2.12 16 36 H 0.21 2.38 8.06 -2.91 -0.02 2.36 16 37 H 0.20 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -70.41 344.16 3.11 -67.30 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.49 Total: 19.59 kcal Atomic # 6 Polarization: 11.79 SS G_CDS: 6.29 Total: 18.08 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -5.48 Total: -126.99 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: -0.06 Total: -25.77 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Atomic # 17 Polarization: 0.01 SS G_CDS: -0.15 Total: -0.14 kcal Total: -70.41 3.11 -67.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319525817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.926 kcal (2) G-P(sol) polarization free energy of solvation -70.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.302 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds