Wall clock time and date at job start Tue Mar 31 2020 17:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99955 * 2 1 4 4 C 1.53001 * 109.47170 * 90.00718 * 3 2 1 5 5 C 1.52996 * 109.47351 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47432 * 179.97438 * 5 4 3 7 7 C 1.36940 * 120.00604 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99467 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00234 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99854 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47400 * 89.99881 * 11 9 7 13 13 H 1.48497 * 109.47002 * 209.99694 * 11 9 7 14 14 H 1.48499 * 109.47155 * 329.99877 * 11 9 7 15 15 C 1.34774 * 120.00076 * 180.02562 * 2 1 3 16 16 O 1.21530 * 120.00015 * 185.50816 * 15 2 1 17 17 C 1.48028 * 119.99846 * 5.50014 * 15 2 1 18 18 N 1.32793 * 119.71935 * 5.84702 * 17 15 2 19 19 C 1.31432 * 121.66359 * 179.70780 * 18 17 15 20 20 C 1.38807 * 120.91940 * 0.56350 * 19 18 17 21 21 Cl 1.73602 * 120.32772 * 179.74895 * 20 19 18 22 22 C 1.38654 * 119.34465 * 359.72135 * 20 19 18 23 23 C 1.38744 * 118.46848 * 0.02562 * 22 20 19 24 24 Cl 1.73598 * 120.47913 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.47349 * 95.33263 * 1 2 3 26 26 H 1.09000 * 109.47267 * 215.33755 * 1 2 3 27 27 H 1.09001 * 109.46621 * 335.33576 * 1 2 3 28 28 H 1.09000 * 109.47042 * 210.00347 * 3 2 1 29 29 H 1.08998 * 109.47542 * 330.00035 * 3 2 1 30 30 H 1.09000 * 109.46836 * 299.99755 * 4 3 2 31 31 H 1.08998 * 109.47446 * 59.99258 * 4 3 2 32 32 H 1.09000 * 109.46927 * 299.99670 * 5 4 3 33 33 H 1.09005 * 109.47467 * 59.99678 * 5 4 3 34 34 H 0.97005 * 119.99456 * 359.97438 * 6 5 4 35 35 H 0.97004 * 119.99753 * 180.02562 * 10 9 7 36 36 H 1.08002 * 119.54047 * 180.28956 * 19 18 17 37 37 H 1.08001 * 120.76907 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2170 3.0356 1.4426 6 7 3.4608 3.4588 2.8237 7 6 4.1339 4.6248 3.0741 8 1 4.4847 5.2326 2.2532 9 6 4.3653 5.0254 4.3828 10 7 3.9374 4.2848 5.3832 11 14 5.2828 6.6162 4.7242 12 1 4.3132 7.7373 4.8150 13 1 6.0219 6.4960 6.0065 14 1 6.2428 6.8802 3.6224 15 6 2.1389 -1.1672 -0.0005 16 8 3.3500 -1.1696 0.1005 17 6 1.4038 -2.4461 -0.1240 18 7 0.0954 -2.4342 -0.3505 19 6 -0.5938 -3.5467 -0.4723 20 6 0.0235 -4.7845 -0.3563 21 17 -0.9029 -6.2442 -0.5134 22 6 1.3874 -4.8436 -0.1141 23 6 2.0902 -3.6532 0.0046 24 17 3.7994 -3.6662 0.3084 25 1 -0.3634 -0.0955 -1.0232 26 1 -0.3634 -0.8383 0.5944 27 1 -0.3632 0.9339 0.4289 28 1 3.1499 1.1384 -0.5139 29 1 1.6085 2.0284 -0.5138 30 1 1.5002 1.8406 1.9564 31 1 3.0417 0.9506 1.9563 32 1 4.1694 2.9057 0.9285 33 1 2.6276 3.7952 0.9289 34 1 3.1454 2.9129 3.5610 35 1 4.0988 4.5649 6.2977 36 1 -1.6561 -3.4970 -0.6610 37 1 1.8913 -5.7942 -0.0201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322754837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:44 Heat of formation + Delta-G solvation = 25.410252 kcal Electronic energy + Delta-G solvation = -22807.390878 eV Core-core repulsion = 19059.105193 eV Total energy + Delta-G solvation = -3748.285685 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.29802 -39.37357 -37.35582 -37.01230 -36.16338 -34.82837 -33.21145 -32.25059 -31.54067 -29.68023 -26.91922 -26.04100 -24.59549 -24.11303 -22.68705 -20.97657 -20.19286 -17.98223 -17.85607 -17.18221 -17.00940 -16.02376 -15.93697 -15.68788 -14.75151 -14.64119 -14.46433 -14.19416 -14.00933 -13.36511 -13.30130 -13.07528 -12.91682 -12.74158 -12.65533 -12.28670 -11.99461 -11.86068 -11.74644 -11.56120 -10.88506 -10.81818 -10.67277 -10.43257 -10.34384 -10.21558 -10.03277 -9.68868 -9.54894 -9.47564 -8.81740 -8.62311 -6.86223 -5.70973 -2.99485 -0.19150 0.29333 1.16409 1.68932 2.29319 2.73943 3.19094 3.47400 3.52036 3.54347 3.56357 3.92312 4.00940 4.25431 4.35511 4.64438 4.89437 5.08224 5.19134 5.27662 5.34227 5.44994 5.61233 5.63627 5.72874 5.91406 5.99038 6.11420 6.34731 6.44244 6.53772 6.88106 6.92108 6.94013 7.26082 7.74911 7.98495 8.48082 9.58767 10.17860 10.52373 11.52202 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.002234 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.633497 B =12529.103012 C =12972.140735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.592 5.592 3 C 0.120 3.880 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.935 5.935 11 Si 0.908 3.092 12 H -0.290 1.290 13 H -0.292 1.292 14 H -0.282 1.282 15 C 0.557 3.443 16 O -0.502 6.502 17 C 0.097 3.903 18 N -0.419 5.419 19 C 0.109 3.891 20 C -0.062 4.062 21 Cl -0.037 7.037 22 C -0.068 4.068 23 C -0.029 4.029 24 Cl 0.004 6.996 25 H 0.059 0.941 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.020 0.980 33 H 0.018 0.982 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.180 0.820 37 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.831 -23.400 -15.867 31.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.324 5.324 3 C -0.002 4.002 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.369 4.369 8 H 0.089 0.911 9 C -0.212 4.212 10 N -0.584 5.584 11 Si 0.739 3.261 12 H -0.218 1.218 13 H -0.218 1.218 14 H -0.207 1.207 15 C 0.342 3.658 16 O -0.376 6.376 17 C -0.042 4.042 18 N -0.131 5.131 19 C -0.051 4.051 20 C -0.091 4.091 21 Cl -0.008 7.008 22 C -0.095 4.095 23 C -0.060 4.060 24 Cl 0.033 6.967 25 H 0.078 0.922 26 H 0.105 0.895 27 H 0.085 0.915 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.038 0.962 33 H 0.036 0.964 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.197 0.803 37 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.391 -22.520 -15.898 30.223 hybrid contribution 0.640 -0.358 0.646 0.977 sum -11.751 -22.879 -15.252 29.902 Atomic orbital electron populations 1.22130 0.78260 1.02890 1.02421 1.47755 1.07900 1.05574 1.71171 1.21592 0.97405 0.82991 0.98258 1.22060 1.01192 0.99037 0.95527 1.20538 0.96036 0.91858 0.88708 1.42357 1.68335 1.25935 1.01129 1.19252 1.27709 0.98099 0.91794 0.91142 1.24758 1.01828 0.99075 0.95584 1.69671 1.51681 1.38876 0.98135 0.86166 0.79341 0.83254 0.77311 1.21755 1.21790 1.20748 1.17654 0.86712 0.82639 0.78790 1.90931 1.12413 1.86029 1.48239 1.21354 0.89955 0.93907 0.99012 1.68500 1.05853 1.28681 1.10067 1.23124 1.01423 0.85397 0.95171 1.22288 0.92806 0.90198 1.03836 1.98422 1.72372 1.34180 1.95790 1.21515 0.92179 0.98800 0.97017 1.21944 0.89735 0.93498 1.00795 1.98476 1.06801 1.98555 1.92828 0.92232 0.89473 0.91517 0.89644 0.90087 0.91930 0.91386 0.96172 0.96398 0.78321 0.93562 0.80346 0.82013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.83 9.12 59.85 0.55 1.38 16 2 N -0.59 -7.59 2.87 -182.63 -0.52 -8.11 16 3 C 0.12 1.65 5.34 -4.04 -0.02 1.63 16 4 C -0.14 -2.41 5.65 -26.73 -0.15 -2.56 16 5 C 0.16 3.29 6.26 -4.05 -0.03 3.27 16 6 N -0.73 -19.60 5.60 -59.91 -0.34 -19.94 16 7 C -0.24 -6.91 9.99 -15.06 -0.15 -7.06 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 C -0.02 -0.50 5.50 -17.43 -0.10 -0.60 16 10 N -0.93 -29.22 13.06 55.49 0.72 -28.50 16 11 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 14 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 15 C 0.56 7.84 7.63 -12.25 -0.09 7.75 16 16 O -0.50 -8.47 13.62 5.34 0.07 -8.40 16 17 C 0.10 1.10 6.57 -82.99 -0.55 0.55 16 18 N -0.42 -3.82 6.15 -9.75 -0.06 -3.87 16 19 C 0.11 0.72 10.98 -17.51 -0.19 0.53 16 20 C -0.06 -0.41 6.35 -39.22 -0.25 -0.66 16 21 Cl -0.04 -0.20 28.99 -51.86 -1.50 -1.70 16 22 C -0.07 -0.51 9.78 -39.24 -0.38 -0.89 16 23 C -0.03 -0.30 6.37 -38.94 -0.25 -0.55 16 24 Cl 0.00 0.05 26.05 -51.86 -1.35 -1.30 16 25 H 0.06 0.51 8.00 -51.93 -0.42 0.09 16 26 H 0.09 0.83 5.76 -51.93 -0.30 0.53 16 27 H 0.07 0.61 8.03 -51.93 -0.42 0.19 16 28 H 0.09 1.26 7.50 -51.93 -0.39 0.87 16 29 H 0.08 0.95 8.07 -51.93 -0.42 0.53 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 32 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.38 10.78 7.67 -40.82 -0.31 10.47 16 35 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.16 0.86 8.06 -52.49 -0.42 0.44 16 LS Contribution 346.61 15.07 5.22 5.22 Total: -1.00 -33.81 346.61 -8.72 -42.54 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -4.34 Total: 3.30 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -1.61 Total: 2.79 kcal Atomic # 7 Polarization: -60.23 SS G_CDS: -0.20 Total: -60.43 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.07 Total: -8.40 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -2.85 Total: -3.01 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.81 -8.72 -42.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322754837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.949 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds