Wall clock time and date at job start Tue Mar 31 2020 17:24:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46498 * 119.99955 * 2 1 4 4 C 1.53001 * 109.47170 * 90.00718 * 3 2 1 5 5 C 1.52996 * 109.47351 * 180.02562 * 4 3 2 6 6 N 1.46497 * 109.47432 * 179.97438 * 5 4 3 7 7 C 1.36940 * 120.00604 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99467 * 0.02562 * 7 6 5 9 9 C 1.38812 * 120.00234 * 180.02562 * 7 6 5 10 10 N 1.31619 * 119.99854 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 119.99790 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47400 * 89.99881 * 11 9 7 13 13 H 1.48497 * 109.47002 * 209.99694 * 11 9 7 14 14 H 1.48499 * 109.47155 * 329.99877 * 11 9 7 15 15 C 1.34774 * 120.00076 * 180.02562 * 2 1 3 16 16 O 1.21530 * 120.00015 * 185.50816 * 15 2 1 17 17 C 1.48028 * 119.99846 * 5.50014 * 15 2 1 18 18 N 1.32793 * 119.71935 * 5.84702 * 17 15 2 19 19 C 1.31432 * 121.66359 * 179.70780 * 18 17 15 20 20 C 1.38807 * 120.91940 * 0.56350 * 19 18 17 21 21 Cl 1.73602 * 120.32772 * 179.74895 * 20 19 18 22 22 C 1.38654 * 119.34465 * 359.72135 * 20 19 18 23 23 C 1.38744 * 118.46848 * 0.02562 * 22 20 19 24 24 Cl 1.73598 * 120.47913 * 179.97438 * 23 22 20 25 25 H 1.09001 * 109.47349 * 95.33263 * 1 2 3 26 26 H 1.09000 * 109.47267 * 215.33755 * 1 2 3 27 27 H 1.09001 * 109.46621 * 335.33576 * 1 2 3 28 28 H 1.09000 * 109.47042 * 210.00347 * 3 2 1 29 29 H 1.08998 * 109.47542 * 330.00035 * 3 2 1 30 30 H 1.09000 * 109.46836 * 299.99755 * 4 3 2 31 31 H 1.08998 * 109.47446 * 59.99258 * 4 3 2 32 32 H 1.09000 * 109.46927 * 299.99670 * 5 4 3 33 33 H 1.09005 * 109.47467 * 59.99678 * 5 4 3 34 34 H 0.97005 * 119.99456 * 359.97438 * 6 5 4 35 35 H 0.97004 * 119.99753 * 180.02562 * 10 9 7 36 36 H 1.08002 * 119.54047 * 180.28956 * 19 18 17 37 37 H 1.08001 * 120.76907 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4526 1.7103 1.4425 5 6 3.2170 3.0356 1.4426 6 7 3.4608 3.4588 2.8237 7 6 4.1339 4.6248 3.0741 8 1 4.4847 5.2326 2.2532 9 6 4.3653 5.0254 4.3828 10 7 3.9374 4.2848 5.3832 11 14 5.2828 6.6162 4.7242 12 1 4.3132 7.7373 4.8150 13 1 6.0219 6.4960 6.0065 14 1 6.2428 6.8802 3.6224 15 6 2.1389 -1.1672 -0.0005 16 8 3.3500 -1.1696 0.1005 17 6 1.4038 -2.4461 -0.1240 18 7 0.0954 -2.4342 -0.3505 19 6 -0.5938 -3.5467 -0.4723 20 6 0.0235 -4.7845 -0.3563 21 17 -0.9029 -6.2442 -0.5134 22 6 1.3874 -4.8436 -0.1141 23 6 2.0902 -3.6532 0.0046 24 17 3.7994 -3.6662 0.3084 25 1 -0.3634 -0.0955 -1.0232 26 1 -0.3634 -0.8383 0.5944 27 1 -0.3632 0.9339 0.4289 28 1 3.1499 1.1384 -0.5139 29 1 1.6085 2.0284 -0.5138 30 1 1.5002 1.8406 1.9564 31 1 3.0417 0.9506 1.9563 32 1 4.1694 2.9057 0.9285 33 1 2.6276 3.7952 0.9289 34 1 3.1454 2.9129 3.5610 35 1 4.0988 4.5649 6.2977 36 1 -1.6561 -3.4970 -0.6610 37 1 1.8913 -5.7942 -0.0201 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322754837.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:44 Heat of formation + Delta-G solvation = 4.053935 kcal Electronic energy + Delta-G solvation = -22808.316958 eV Core-core repulsion = 19059.105193 eV Total energy + Delta-G solvation = -3749.211765 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.060 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.06205 -40.30954 -37.97178 -37.77618 -37.47874 -36.43193 -34.29527 -33.58879 -32.50215 -31.34169 -27.93493 -27.33096 -25.67040 -25.06296 -24.17129 -22.56867 -21.16264 -19.16882 -18.82333 -18.54686 -17.91356 -17.11184 -16.85585 -16.63519 -16.35147 -15.88686 -15.54803 -15.34208 -15.12951 -14.95103 -14.61493 -14.06542 -13.99666 -13.58299 -13.41826 -13.39062 -13.24030 -12.95393 -12.76832 -12.71529 -12.54494 -12.36547 -12.30161 -12.04699 -11.82421 -11.79271 -11.23012 -10.94714 -10.87245 -10.44449 -10.19144 -9.65144 -9.02963 -7.96603 -5.26616 -0.90890 -0.32329 0.56154 0.97959 1.45341 1.46503 1.49259 1.57814 1.80227 2.37787 2.55572 2.82261 3.27873 3.36840 3.40797 3.53763 3.76539 3.86512 4.00665 4.26467 4.26822 4.44312 4.53447 4.56097 4.62463 4.74310 4.79811 4.89537 4.94590 5.18603 5.30396 5.31482 5.47782 5.53931 6.16784 6.25543 6.31985 6.97478 7.30825 8.06406 8.29701 9.27456 Molecular weight = 331.06amu Principal moments of inertia in cm(-1) A = 0.023047 B = 0.002234 C = 0.002158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.633497 B =12529.103012 C =12972.140735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.593 5.593 3 C 0.128 3.872 4 C -0.121 4.121 5 C 0.155 3.845 6 N -0.750 5.750 7 C -0.247 4.247 8 H 0.078 0.922 9 C -0.081 4.081 10 N -0.973 5.973 11 Si 0.979 3.021 12 H -0.283 1.283 13 H -0.295 1.295 14 H -0.269 1.269 15 C 0.548 3.452 16 O -0.542 6.542 17 C 0.077 3.923 18 N -0.422 5.422 19 C 0.118 3.882 20 C -0.052 4.052 21 Cl -0.018 7.018 22 C -0.062 4.062 23 C -0.041 4.041 24 Cl -0.021 7.021 25 H 0.076 0.924 26 H 0.090 0.910 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.016 0.984 33 H 0.035 0.965 34 H 0.372 0.628 35 H 0.252 0.748 36 H 0.215 0.785 37 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.785 -23.863 -17.272 32.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.324 5.324 3 C 0.006 3.994 4 C -0.160 4.160 5 C 0.028 3.972 6 N -0.392 5.392 7 C -0.379 4.379 8 H 0.096 0.904 9 C -0.272 4.272 10 N -0.624 5.624 11 Si 0.807 3.193 12 H -0.209 1.209 13 H -0.222 1.222 14 H -0.194 1.194 15 C 0.334 3.666 16 O -0.419 6.419 17 C -0.061 4.061 18 N -0.134 5.134 19 C -0.042 4.042 20 C -0.082 4.082 21 Cl 0.011 6.989 22 C -0.089 4.089 23 C -0.072 4.072 24 Cl 0.009 6.991 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.034 0.966 33 H 0.053 0.947 34 H 0.203 0.797 35 H 0.061 0.939 36 H 0.231 0.769 37 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -14.374 -22.984 -17.356 32.189 hybrid contribution 1.102 -0.356 1.011 1.537 sum -13.272 -23.341 -16.345 31.434 Atomic orbital electron populations 1.22302 0.76180 1.03486 1.03669 1.47853 1.09136 1.04831 1.70583 1.21425 0.97930 0.84408 0.95668 1.21852 1.00072 0.96250 0.97851 1.20703 0.96515 0.93963 0.85968 1.42622 1.68224 1.25391 1.03005 1.19693 1.27242 0.98767 0.92208 0.90365 1.25674 1.03325 1.02781 0.95457 1.69840 1.53361 1.40850 0.98300 0.85055 0.78135 0.79029 0.77032 1.20945 1.22169 1.19361 1.18146 0.86579 0.83820 0.78015 1.90900 1.14164 1.86795 1.50070 1.20988 0.90943 0.92782 1.01347 1.68469 1.04684 1.29862 1.10359 1.23709 1.02651 0.84621 0.93267 1.22358 0.92485 0.90998 1.02349 1.98441 1.71765 1.33161 1.95530 1.21720 0.92611 0.98581 0.95974 1.22021 0.88714 0.94322 1.02111 1.98462 1.08905 1.98613 1.93163 0.90505 0.89162 0.90721 0.90817 0.87110 0.91617 0.94267 0.96596 0.94709 0.79711 0.93947 0.76867 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.49 9.12 127.77 1.16 2.66 16 2 N -0.59 -14.85 2.87 -849.99 -2.44 -17.30 16 3 C 0.13 3.48 5.34 86.38 0.46 3.94 16 4 C -0.12 -4.23 5.65 30.59 0.17 -4.06 16 5 C 0.16 6.53 6.26 86.38 0.54 7.07 16 6 N -0.75 -40.69 5.60 -343.45 -1.92 -42.61 16 7 C -0.25 -14.46 9.99 84.03 0.84 -13.63 16 8 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 9 C -0.08 -4.81 5.50 84.86 0.47 -4.34 16 10 N -0.97 -61.88 13.06 21.65 0.28 -61.60 16 11 Si 0.98 47.46 29.55 68.60 2.03 49.49 16 12 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 14 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 15 C 0.55 15.66 7.63 86.84 0.66 16.33 16 16 O -0.54 -19.19 13.62 -3.81 -0.05 -19.24 16 17 C 0.08 1.71 6.57 41.89 0.28 1.99 16 18 N -0.42 -6.85 6.15 -184.75 -1.14 -7.99 16 19 C 0.12 1.20 10.98 84.89 0.93 2.13 16 20 C -0.05 -0.55 6.35 22.51 0.14 -0.40 16 21 Cl -0.02 -0.14 28.99 -2.72 -0.08 -0.22 16 22 C -0.06 -0.83 9.78 22.49 0.22 -0.61 16 23 C -0.04 -0.84 6.37 22.68 0.14 -0.69 16 24 Cl -0.02 -0.52 26.05 -2.72 -0.07 -0.59 16 25 H 0.08 1.10 8.00 -2.39 -0.02 1.08 16 26 H 0.09 1.55 5.76 -2.39 -0.01 1.54 16 27 H 0.07 1.19 8.03 -2.39 -0.02 1.17 16 28 H 0.07 2.19 7.50 -2.39 -0.02 2.17 16 29 H 0.11 2.35 8.07 -2.39 -0.02 2.33 16 30 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 34 H 0.37 21.52 7.67 -92.70 -0.71 20.81 16 35 H 0.25 15.41 8.31 -92.71 -0.77 14.64 16 36 H 0.21 0.60 8.06 -2.91 -0.02 0.57 16 37 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 Total: -1.00 -74.52 346.61 3.03 -71.48 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.40 Total: 18.18 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 6.02 Total: 10.38 kcal Atomic # 7 Polarization: -124.27 SS G_CDS: -5.22 Total: -129.49 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.05 Total: -19.24 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Atomic # 17 Polarization: -0.66 SS G_CDS: -0.15 Total: -0.81 kcal Total: -74.52 3.03 -71.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322754837.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.537 kcal (2) G-P(sol) polarization free energy of solvation -74.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds