Wall clock time and date at job start Tue Mar 31 2020 16:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86795 * 119.99993 * 2 1 4 4 H 1.48502 * 109.46989 * 270.00170 * 3 2 1 5 5 H 1.48502 * 109.47277 * 30.00190 * 3 2 1 6 6 H 1.48502 * 109.47231 * 150.00224 * 3 2 1 7 7 C 1.38800 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00089 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00302 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47218 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00407 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00059 * 179.97438 * 11 10 9 14 14 S 1.65601 * 119.99983 * 179.97438 * 13 11 10 15 15 O 1.42100 * 106.40256 * 311.45894 * 14 13 11 16 16 O 1.42101 * 106.40035 * 178.53958 * 14 13 11 17 17 C 1.76196 * 107.21671 * 65.00513 * 14 13 11 18 18 C 1.34565 * 126.58298 * 329.95174 * 17 14 13 19 19 N 1.34003 * 108.03195 * 180.02562 * 18 17 14 20 20 C 1.30903 * 109.30286 * 359.89407 * 19 18 17 21 21 N 1.34810 * 108.60907 * 0.20718 * 20 19 18 22 22 C 1.47013 * 111.18090 * 179.69358 * 21 20 19 23 23 C 1.54395 * 105.52437 * 17.13914 * 22 21 20 24 24 C 1.51566 * 141.44527 * 180.21007 * 20 19 18 25 25 H 0.96995 * 119.99906 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46943 * 60.00113 * 10 9 7 27 27 H 1.09007 * 109.46900 * 300.00498 * 10 9 7 28 28 H 0.96999 * 119.99966 * 0.02562 * 13 11 10 29 29 H 1.08005 * 125.97906 * 0.02699 * 18 17 14 30 30 H 1.08995 * 110.23657 * 136.14458 * 22 21 20 31 31 H 1.09002 * 110.23505 * 258.02703 * 22 21 20 32 32 H 1.09001 * 110.95932 * 216.15316 * 23 22 21 33 33 H 1.08995 * 110.97396 * 92.38882 * 23 22 21 34 34 H 1.09004 * 110.47429 * 282.15613 * 24 20 19 35 35 H 1.08998 * 110.48088 * 44.77350 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2965 0.0006 13 7 6.0456 -4.4948 0.0010 14 16 7.6791 -4.7673 0.0005 15 8 8.2229 -3.9439 -1.0220 16 8 7.8506 -6.1775 0.0362 17 6 8.3112 -4.1505 1.5251 18 6 7.8176 -3.1237 2.2412 19 7 8.5819 -2.9730 3.3315 20 6 9.5334 -3.8720 3.3206 21 7 9.4019 -4.6241 2.2095 22 6 10.4507 -5.6516 2.1364 23 6 11.0294 -5.7537 3.5641 24 6 10.7232 -4.3484 4.1296 25 1 -0.4850 0.8400 0.0004 26 1 3.6433 -3.4319 -0.8896 27 1 3.6439 -3.4315 0.8904 28 1 5.4290 -5.2436 0.0011 29 1 6.9562 -2.5258 1.9824 30 1 10.0220 -6.6071 1.8343 31 1 11.2272 -5.3485 1.4340 32 1 12.1035 -5.9378 3.5373 33 1 10.5171 -6.5254 4.1385 34 1 11.5749 -3.6843 3.9823 35 1 10.4653 -4.4107 5.1868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322755390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:44 Heat of formation + Delta-G solvation = -31.011245 kcal Electronic energy + Delta-G solvation = -23702.841903 eV Core-core repulsion = 19956.197011 eV Total energy + Delta-G solvation = -3746.644892 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.82383 -40.05773 -37.49032 -36.85599 -36.23131 -34.63584 -32.50811 -32.35770 -29.78801 -29.19670 -27.80613 -25.70699 -22.73707 -22.39040 -22.16695 -20.78772 -19.75417 -18.46345 -18.19976 -17.62315 -17.10760 -16.89406 -15.89120 -15.67992 -15.17969 -15.07833 -14.60796 -14.39176 -14.32005 -14.23335 -13.95294 -13.83167 -12.97546 -12.85621 -12.82467 -12.60745 -12.46216 -12.33564 -12.19355 -11.88235 -11.71819 -11.34489 -11.05803 -11.00395 -10.77938 -10.28575 -10.25720 -10.04994 -9.89837 -9.07300 -9.06666 -8.65154 -7.04617 -6.35360 -4.09963 -0.16856 1.18486 2.03413 2.11213 2.38026 2.70994 2.84336 3.20666 3.29933 3.35367 3.44761 3.46532 3.86429 4.06648 4.11815 4.20395 4.27563 4.44968 4.66745 4.77044 4.86376 4.90209 4.98992 5.03755 5.07472 5.11061 5.28278 5.32825 5.51107 5.62737 5.80768 6.34924 6.37931 6.55653 7.44116 7.60343 7.87302 8.34952 9.10047 10.73572 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.003281 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.536323 B = 8532.641140 C = 9277.089938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.097 3.903 3 Si 0.855 3.145 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.234 1.234 7 C -0.524 4.524 8 H 0.091 0.909 9 S -0.135 6.135 10 C -0.130 4.130 11 C 0.547 3.453 12 O -0.464 6.464 13 N -1.047 6.047 14 S 2.713 3.287 15 O -0.916 6.916 16 O -0.950 6.950 17 C -0.582 4.582 18 C 0.117 3.883 19 N -0.482 5.482 20 C 0.232 3.768 21 N -0.432 5.432 22 C 0.083 3.917 23 C -0.127 4.127 24 C -0.047 4.047 25 H 0.272 0.728 26 H 0.112 0.888 27 H 0.113 0.887 28 H 0.438 0.562 29 H 0.196 0.804 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.907 -15.566 6.561 26.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.112 4.112 3 Si 0.680 3.320 4 H -0.191 1.191 5 H -0.198 1.198 6 H -0.158 1.158 7 C -0.671 4.671 8 H 0.109 0.891 9 S 0.090 5.910 10 C -0.282 4.282 11 C 0.334 3.666 12 O -0.333 6.333 13 N -0.816 5.816 14 S 2.800 3.200 15 O -0.905 6.905 16 O -0.940 6.940 17 C -0.777 4.777 18 C -0.039 4.039 19 N -0.200 5.200 20 C -0.033 4.033 21 N -0.114 5.114 22 C -0.037 4.037 23 C -0.165 4.165 24 C -0.086 4.086 25 H 0.082 0.918 26 H 0.131 0.869 27 H 0.131 0.869 28 H 0.276 0.724 29 H 0.212 0.788 30 H 0.124 0.876 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.112 0.888 34 H 0.123 0.877 35 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 22.448 -13.864 6.322 27.131 hybrid contribution -1.227 -0.894 -0.092 1.521 sum 21.221 -14.758 6.230 26.588 Atomic orbital electron populations 1.69929 1.05917 1.27929 1.47541 1.24704 0.94462 0.99001 0.93022 0.86762 0.81908 0.83298 0.80049 1.19102 1.19825 1.15814 1.22251 0.87731 0.97699 1.59432 0.89069 1.84908 1.10075 0.98450 1.97519 1.23432 0.91564 1.05918 1.07266 1.20552 0.92831 0.80554 0.72686 1.90905 1.58385 1.40718 1.43340 1.54967 1.28881 1.16065 1.81735 1.01711 0.72419 0.73095 0.72817 1.93690 1.75738 1.69122 1.51983 1.93608 1.84408 1.29062 1.86936 1.32745 1.04564 1.15511 1.24830 1.22888 0.98975 0.93020 0.88973 1.70050 1.05163 1.22353 1.22467 1.24962 0.97829 0.91048 0.89468 1.45937 1.20313 1.26779 1.18371 1.22784 0.88873 0.91737 1.00343 1.22780 1.03259 0.97211 0.93230 1.20823 0.92206 0.95755 0.99789 0.91801 0.86949 0.86890 0.72407 0.78757 0.87555 0.88346 0.87368 0.88838 0.87711 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.72 13.97 55.49 0.78 -24.94 16 2 C 0.10 2.75 5.50 -17.43 -0.10 2.65 16 3 Si 0.86 21.10 27.74 -169.99 -4.71 16.39 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.23 -5.73 6.74 56.52 0.38 -5.35 16 7 C -0.52 -14.30 10.04 30.94 0.31 -13.99 16 8 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 9 S -0.14 -3.18 18.55 -107.50 -1.99 -5.17 16 10 C -0.13 -2.18 6.16 36.00 0.22 -1.96 16 11 C 0.55 8.59 6.88 -10.99 -0.08 8.51 16 12 O -0.46 -8.85 12.41 -11.48 -0.14 -8.99 16 13 N -1.05 -12.34 5.69 31.22 0.18 -12.16 16 14 S 2.71 36.97 5.56 -107.50 -0.60 36.38 16 15 O -0.92 -15.87 16.97 -64.60 -1.10 -16.97 16 16 O -0.95 -12.72 18.02 -57.17 -1.03 -13.75 16 17 C -0.58 -8.41 7.20 -16.45 -0.12 -8.53 16 18 C 0.12 1.88 10.75 -17.90 -0.19 1.69 16 19 N -0.48 -7.68 11.26 -10.56 -0.12 -7.80 16 20 C 0.23 2.86 8.58 -154.86 -1.33 1.53 16 21 N -0.43 -5.25 3.61 -111.32 -0.40 -5.65 16 22 C 0.08 0.60 7.78 -3.03 -0.02 0.58 16 23 C -0.13 -0.48 7.17 -25.19 -0.18 -0.66 16 24 C -0.05 -0.29 6.86 -26.65 -0.18 -0.47 16 25 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 26 H 0.11 1.70 8.14 -51.91 -0.42 1.28 16 27 H 0.11 1.66 8.14 -51.91 -0.42 1.24 16 28 H 0.44 3.28 8.83 -34.47 -0.30 2.97 16 29 H 0.20 3.19 5.47 -52.48 -0.29 2.91 16 30 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.11 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 327.41 15.07 4.93 4.93 Total: -1.00 -38.82 327.41 -9.43 -48.25 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: -3.55 Total: 0.14 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -1.67 Total: -10.65 kcal Atomic # 7 Polarization: -50.99 SS G_CDS: 0.43 Total: -50.56 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -2.27 Total: -39.71 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.39 kcal Atomic # 16 Polarization: 33.80 SS G_CDS: -2.59 Total: 31.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -38.82 -9.43 -48.25 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322755390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.238 kcal (2) G-P(sol) polarization free energy of solvation -38.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds