Wall clock time and date at job start Tue Mar 31 2020 16:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86795 * 119.99993 * 2 1 4 4 H 1.48502 * 109.46989 * 270.00170 * 3 2 1 5 5 H 1.48502 * 109.47277 * 30.00190 * 3 2 1 6 6 H 1.48502 * 109.47231 * 150.00224 * 3 2 1 7 7 C 1.38800 * 119.99731 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00089 * 0.02562 * 7 2 1 9 9 S 1.76199 * 119.99957 * 179.97438 * 7 2 1 10 10 C 1.80999 * 100.00302 * 180.02562 * 9 7 2 11 11 C 1.50691 * 109.47218 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00407 * 0.02562 * 11 10 9 13 13 N 1.34780 * 120.00059 * 179.97438 * 11 10 9 14 14 S 1.65601 * 119.99983 * 179.97438 * 13 11 10 15 15 O 1.42100 * 106.40256 * 311.45894 * 14 13 11 16 16 O 1.42101 * 106.40035 * 178.53958 * 14 13 11 17 17 C 1.76196 * 107.21671 * 65.00513 * 14 13 11 18 18 C 1.34565 * 126.58298 * 329.95174 * 17 14 13 19 19 N 1.34003 * 108.03195 * 180.02562 * 18 17 14 20 20 C 1.30903 * 109.30286 * 359.89407 * 19 18 17 21 21 N 1.34810 * 108.60907 * 0.20718 * 20 19 18 22 22 C 1.47013 * 111.18090 * 179.69358 * 21 20 19 23 23 C 1.54395 * 105.52437 * 17.13914 * 22 21 20 24 24 C 1.51566 * 141.44527 * 180.21007 * 20 19 18 25 25 H 0.96995 * 119.99906 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.46943 * 60.00113 * 10 9 7 27 27 H 1.09007 * 109.46900 * 300.00498 * 10 9 7 28 28 H 0.96999 * 119.99966 * 0.02562 * 13 11 10 29 29 H 1.08005 * 125.97906 * 0.02699 * 18 17 14 30 30 H 1.08995 * 110.23657 * 136.14458 * 22 21 20 31 31 H 1.09002 * 110.23505 * 258.02703 * 22 21 20 32 32 H 1.09001 * 110.95932 * 216.15316 * 23 22 21 33 33 H 1.08995 * 110.97396 * 92.38882 * 23 22 21 34 34 H 1.09004 * 110.47429 * 282.15613 * 24 20 19 35 35 H 1.08998 * 110.48088 * 44.77350 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3440 -2.2965 0.0006 13 7 6.0456 -4.4948 0.0010 14 16 7.6791 -4.7673 0.0005 15 8 8.2229 -3.9439 -1.0220 16 8 7.8506 -6.1775 0.0362 17 6 8.3112 -4.1505 1.5251 18 6 7.8176 -3.1237 2.2412 19 7 8.5819 -2.9730 3.3315 20 6 9.5334 -3.8720 3.3206 21 7 9.4019 -4.6241 2.2095 22 6 10.4507 -5.6516 2.1364 23 6 11.0294 -5.7537 3.5641 24 6 10.7232 -4.3484 4.1296 25 1 -0.4850 0.8400 0.0004 26 1 3.6433 -3.4319 -0.8896 27 1 3.6439 -3.4315 0.8904 28 1 5.4290 -5.2436 0.0011 29 1 6.9562 -2.5258 1.9824 30 1 10.0220 -6.6071 1.8343 31 1 11.2272 -5.3485 1.4340 32 1 12.1035 -5.9378 3.5373 33 1 10.5171 -6.5254 4.1385 34 1 11.5749 -3.6843 3.9823 35 1 10.4653 -4.4107 5.1868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322755390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:43 Heat of formation + Delta-G solvation = -61.999951 kcal Electronic energy + Delta-G solvation = -23704.185675 eV Core-core repulsion = 19956.197011 eV Total energy + Delta-G solvation = -3747.988663 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.049 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.73123 -41.36271 -38.65640 -37.57743 -37.38986 -35.86413 -34.65284 -33.18693 -31.14956 -30.05823 -28.47992 -27.85260 -23.49123 -23.44276 -23.21690 -21.66948 -20.81867 -20.10443 -19.29899 -18.80534 -18.48496 -17.70311 -17.10814 -17.08194 -16.76205 -16.29434 -16.13747 -15.47477 -15.38582 -15.10418 -14.91182 -14.87315 -14.32315 -14.16527 -13.99596 -13.68649 -13.54142 -13.36145 -13.33475 -13.02397 -12.97574 -12.69716 -12.60900 -12.21235 -12.09190 -11.86818 -11.62053 -11.34231 -11.15574 -10.99708 -10.55414 -10.02805 -9.00417 -8.50044 -6.21219 -1.28417 0.17825 0.75849 0.93386 1.25881 1.33373 1.40498 1.50649 1.64935 1.71715 2.15643 2.25295 2.58422 2.69359 2.88973 2.99417 3.32591 3.37972 3.57139 3.77514 3.84353 4.02653 4.17335 4.18809 4.32803 4.44723 4.46794 4.65746 4.78916 4.96412 5.04977 5.35199 5.41320 5.70317 5.72948 6.15278 6.20390 6.61791 6.95603 8.61954 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.003281 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.536323 B = 8532.641140 C = 9277.089938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.262 1.262 6 H -0.234 1.234 7 C -0.525 4.525 8 H 0.071 0.929 9 S -0.172 6.172 10 C -0.118 4.118 11 C 0.558 3.442 12 O -0.499 6.499 13 N -1.026 6.026 14 S 2.738 3.262 15 O -0.953 6.953 16 O -0.944 6.944 17 C -0.593 4.593 18 C 0.093 3.907 19 N -0.528 5.528 20 C 0.229 3.771 21 N -0.436 5.436 22 C 0.062 3.938 23 C -0.108 4.108 24 C -0.047 4.047 25 H 0.276 0.724 26 H 0.137 0.863 27 H 0.140 0.860 28 H 0.459 0.541 29 H 0.181 0.819 30 H 0.112 0.888 31 H 0.114 0.886 32 H 0.148 0.852 33 H 0.104 0.896 34 H 0.124 0.876 35 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.370 -17.497 7.390 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.158 4.158 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.187 1.187 6 H -0.158 1.158 7 C -0.672 4.672 8 H 0.089 0.911 9 S 0.054 5.946 10 C -0.270 4.270 11 C 0.345 3.655 12 O -0.370 6.370 13 N -0.798 5.798 14 S 2.825 3.175 15 O -0.943 6.943 16 O -0.934 6.934 17 C -0.789 4.789 18 C -0.063 4.063 19 N -0.247 5.247 20 C -0.037 4.037 21 N -0.117 5.117 22 C -0.056 4.056 23 C -0.146 4.146 24 C -0.086 4.086 25 H 0.086 0.914 26 H 0.155 0.845 27 H 0.158 0.842 28 H 0.301 0.699 29 H 0.198 0.802 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.165 0.835 33 H 0.123 0.877 34 H 0.142 0.858 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 24.916 -15.863 7.147 30.389 hybrid contribution -1.912 -0.490 -0.319 1.999 sum 23.004 -16.353 6.829 29.038 Atomic orbital electron populations 1.70007 1.07260 1.28964 1.49155 1.25502 0.95193 1.02109 0.93036 0.85954 0.80853 0.80003 0.80138 1.18872 1.18672 1.15800 1.22424 0.89842 0.96875 1.58077 0.91132 1.84857 1.07029 1.05016 1.97682 1.23441 0.92805 1.00899 1.09842 1.20236 0.91955 0.81174 0.72124 1.90912 1.58957 1.42183 1.44971 1.54557 1.28969 1.15484 1.80746 1.00867 0.72150 0.72478 0.72035 1.93649 1.76643 1.70147 1.53829 1.93605 1.84354 1.28541 1.86888 1.32656 1.05815 1.15604 1.24839 1.22774 0.99530 0.93979 0.90044 1.69960 1.06918 1.24643 1.23155 1.26086 0.97916 0.89577 0.90126 1.46381 1.20092 1.27507 1.17751 1.23376 0.88129 0.90755 1.03377 1.22902 1.05542 0.95766 0.90399 1.21220 0.90161 0.97283 0.99910 0.91421 0.84528 0.84215 0.69920 0.80222 0.86968 0.86753 0.83450 0.87712 0.85804 0.85938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 13.97 21.65 0.30 -54.19 16 2 C 0.05 2.69 5.50 84.86 0.47 3.16 16 3 Si 0.91 43.92 27.74 68.60 1.90 45.83 16 4 H -0.26 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.23 -11.23 6.74 99.48 0.67 -10.56 16 7 C -0.52 -28.91 10.04 67.95 0.68 -28.23 16 8 H 0.07 4.05 8.03 -2.91 -0.02 4.03 16 9 S -0.17 -8.07 18.55 -56.49 -1.05 -9.12 16 10 C -0.12 -3.81 6.16 71.23 0.44 -3.37 16 11 C 0.56 17.09 6.88 87.65 0.60 17.69 16 12 O -0.50 -19.18 12.41 13.27 0.16 -19.01 16 13 N -1.03 -22.79 5.69 -173.54 -0.99 -23.78 16 14 S 2.74 72.15 5.56 -56.49 -0.31 71.83 16 15 O -0.95 -32.87 16.97 -120.90 -2.05 -34.92 16 16 O -0.94 -23.48 18.02 -128.00 -2.31 -25.78 16 17 C -0.59 -16.95 7.20 83.01 0.60 -16.35 16 18 C 0.09 3.07 10.75 83.52 0.90 3.97 16 19 N -0.53 -17.04 11.26 -187.33 -2.11 -19.15 16 20 C 0.23 5.35 8.58 138.36 1.19 6.54 16 21 N -0.44 -9.98 3.61 -506.09 -1.83 -11.81 16 22 C 0.06 0.71 7.78 86.76 0.67 1.39 16 23 C -0.11 -0.35 7.17 31.59 0.23 -0.12 16 24 C -0.05 -0.43 6.86 30.65 0.21 -0.22 16 25 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 26 H 0.14 3.85 8.14 -2.39 -0.02 3.83 16 27 H 0.14 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.46 5.80 8.83 -96.75 -0.85 4.94 16 29 H 0.18 6.23 5.47 -2.91 -0.02 6.21 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.15 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 34 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -87.02 327.41 -2.02 -89.04 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: 0.26 Total: 6.61 kcal Atomic # 6 Polarization: -21.54 SS G_CDS: 5.99 Total: -15.55 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -4.62 Total: -108.93 kcal Atomic # 8 Polarization: -75.52 SS G_CDS: -4.19 Total: -79.71 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 1.90 Total: 45.83 kcal Atomic # 16 Polarization: 64.08 SS G_CDS: -1.36 Total: 62.72 kcal Total: -87.02 -2.02 -89.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322755390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.045 kcal (2) G-P(sol) polarization free energy of solvation -87.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds