Wall clock time and date at job start Tue Mar 31 2020 16:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48498 * 109.47128 * 264.64910 * 3 2 1 5 5 H 1.48497 * 109.47210 * 24.65020 * 3 2 1 6 6 H 1.48504 * 109.47215 * 144.65076 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99500 * 336.12087 * 7 2 1 9 9 N 1.36933 * 120.00264 * 156.11415 * 7 2 1 10 10 C 1.47428 * 125.64769 * 161.72608 * 9 7 2 11 11 C 1.54903 * 104.83282 * 155.91208 * 10 9 7 12 12 C 1.55157 * 101.58343 * 37.00897 * 11 10 9 13 13 O 1.42895 * 110.71802 * 83.04056 * 12 11 10 14 14 C 1.52999 * 110.72109 * 206.13852 * 12 11 10 15 15 N 1.46494 * 109.47112 * 180.02562 * 14 12 11 16 16 C 1.34782 * 120.00079 * 179.72429 * 15 14 12 17 17 O 1.21632 * 119.99917 * 0.27281 * 16 15 14 18 18 C 1.47240 * 120.00015 * 180.27016 * 16 15 14 19 19 C 1.35153 * 123.13844 * 179.97438 * 18 16 15 20 20 S 1.70933 * 108.86334 * 179.97438 * 19 18 16 21 21 C 1.70762 * 91.14689 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 124.72524 * 179.97438 * 21 20 19 23 23 N 1.28768 * 110.55290 * 359.75898 * 21 20 19 24 24 C 1.47012 * 125.65118 * 341.77145 * 9 7 2 25 25 H 0.97001 * 120.00109 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.36430 * 37.06972 * 10 9 7 27 27 H 1.09005 * 110.46281 * 274.79692 * 10 9 7 28 28 H 1.09002 * 111.00522 * 278.93206 * 11 10 9 29 29 H 1.08998 * 111.00439 * 155.08801 * 11 10 9 30 30 H 0.96705 * 114.00181 * 182.44320 * 13 12 11 31 31 H 1.08997 * 109.47647 * 59.99880 * 14 12 11 32 32 H 1.09004 * 109.47112 * 299.99855 * 14 12 11 33 33 H 0.96999 * 119.99941 * 359.97438 * 15 14 12 34 34 H 1.07998 * 125.56660 * 359.93447 * 19 18 16 35 35 H 1.09004 * 109.88114 * 61.60636 * 24 9 7 36 36 H 1.08997 * 109.88933 * 300.44030 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6107 1.9812 -1.3940 5 1 1.3956 2.6827 0.5839 6 1 3.4866 1.4755 0.8100 7 6 2.0103 -1.2021 0.0005 8 1 1.5396 -2.0972 0.3796 9 7 3.2916 -1.2530 -0.4796 10 6 4.2696 -2.3220 -0.2066 11 6 5.2601 -2.2665 -1.3963 12 6 5.3527 -0.7393 -1.6536 13 8 6.2949 -0.1333 -0.7665 14 6 5.7252 -0.4574 -3.1106 15 7 5.8056 0.9898 -3.3229 16 6 6.1268 1.4759 -4.5383 17 8 6.3450 0.7130 -5.4601 18 6 6.2134 2.9304 -4.7501 19 6 6.5304 3.4860 -5.9407 20 16 6.5253 5.1873 -5.7754 21 6 6.1012 5.0602 -4.1262 22 17 5.8591 6.4091 -3.0605 23 7 5.9815 3.8245 -3.7841 24 6 3.9203 -0.2505 -1.3519 25 1 -0.4850 0.8400 -0.0004 26 1 3.7722 -3.2913 -0.1718 27 1 4.7917 -2.1304 0.7309 28 1 4.8561 -2.7855 -2.2656 29 1 6.2309 -2.6751 -1.1157 30 1 6.3631 0.8267 -0.8610 31 1 4.9654 -0.8798 -3.7682 32 1 6.6910 -0.9111 -3.3330 33 1 5.6313 1.5983 -2.5878 34 1 6.7514 2.9437 -6.8481 35 1 3.9569 0.7128 -0.8432 36 1 3.3561 -0.1606 -2.2802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325141649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:27 Heat of formation + Delta-G solvation = -3.024228 kcal Electronic energy + Delta-G solvation = -23950.747170 eV Core-core repulsion = 20203.272180 eV Total energy + Delta-G solvation = -3747.474990 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.89950 -39.47728 -38.45162 -37.32956 -35.40231 -34.29055 -32.32132 -31.03555 -30.12849 -28.80504 -26.79352 -25.46986 -23.88698 -22.61054 -20.66260 -20.39466 -20.10099 -19.45636 -17.66517 -16.96478 -16.65878 -16.55913 -15.97480 -15.67155 -15.19115 -14.82956 -14.44760 -14.28981 -14.01599 -13.91934 -13.48181 -13.00717 -12.86309 -12.50683 -12.29557 -12.22888 -12.05517 -11.90759 -11.45795 -11.26107 -10.84049 -10.67407 -10.56161 -10.48909 -10.30024 -10.21844 -10.17929 -9.66430 -9.46965 -9.33127 -9.14092 -8.64563 -7.08899 -5.96974 -3.25525 -0.08297 0.19656 0.94625 1.35272 1.44605 2.97048 3.04902 3.31005 3.46119 3.49092 3.84389 4.25816 4.50779 4.57593 4.68378 4.70445 4.96278 5.06388 5.15106 5.19415 5.40483 5.61813 5.73627 5.85248 6.01646 6.13911 6.18583 6.32447 6.43771 6.58118 6.68243 6.80497 7.28232 7.67414 7.72799 7.93656 8.29224 8.80982 9.66890 10.15076 11.19329 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.004088 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.677393 B = 6847.082090 C = 8232.642464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.022 3.978 3 Si 0.881 3.119 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.095 0.905 9 N -0.605 5.605 10 C 0.135 3.865 11 C -0.113 4.113 12 C 0.104 3.896 13 O -0.544 6.544 14 C 0.103 3.897 15 N -0.708 5.708 16 C 0.597 3.403 17 O -0.530 6.530 18 C 0.023 3.977 19 C -0.221 4.221 20 S 0.285 5.715 21 C 0.047 3.953 22 Cl 0.036 6.964 23 N -0.431 5.431 24 C 0.101 3.899 25 H 0.263 0.737 26 H 0.052 0.948 27 H 0.031 0.969 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.369 0.631 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.408 0.592 34 H 0.201 0.799 35 H 0.030 0.970 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.832 11.484 -12.693 24.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.176 4.176 3 Si 0.713 3.287 4 H -0.214 1.214 5 H -0.231 1.231 6 H -0.204 1.204 7 C -0.370 4.370 8 H 0.113 0.887 9 N -0.332 5.332 10 C 0.009 3.991 11 C -0.152 4.152 12 C 0.062 3.938 13 O -0.349 6.349 14 C -0.021 4.021 15 N -0.359 5.359 16 C 0.380 3.620 17 O -0.407 6.407 18 C -0.112 4.112 19 C -0.364 4.364 20 S 0.537 5.463 21 C -0.258 4.258 22 Cl 0.064 6.936 23 N -0.149 5.149 24 C -0.025 4.025 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.099 0.901 30 H 0.216 0.784 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.244 0.756 34 H 0.218 0.782 35 H 0.047 0.953 36 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 16.803 11.188 -13.060 24.043 hybrid contribution 0.035 1.245 0.648 1.404 sum 16.838 12.433 -12.411 24.334 Atomic orbital electron populations 1.69854 1.05505 1.26573 1.52921 1.24962 0.95147 0.97315 1.00225 0.86982 0.79234 0.84853 0.77617 1.21385 1.23104 1.20354 1.18678 0.85105 0.95729 1.37456 0.88729 1.44700 1.10916 1.22729 1.54883 1.21621 0.89759 0.93014 0.94662 1.22753 1.00609 0.91201 1.00590 1.22530 0.88941 0.95951 0.86344 1.86562 1.62001 1.24630 1.61662 1.22152 1.03162 0.79711 0.97046 1.45787 1.69362 1.08818 1.11959 1.16874 0.77220 0.84818 0.83062 1.90833 1.50502 1.57528 1.41796 1.20225 1.07044 0.95020 0.88924 1.26824 1.06030 0.99404 1.04103 1.82975 1.59494 1.00759 1.03023 1.27190 1.08801 0.92939 0.96857 1.98461 1.94988 1.36366 1.63776 1.66689 1.14923 0.99483 1.33791 1.22310 0.91203 0.93706 0.95271 0.92710 0.92928 0.95099 0.89571 0.90121 0.78375 0.89574 0.90009 0.75624 0.78242 0.95306 0.93444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.22 13.97 55.49 0.78 -27.45 16 2 C 0.02 0.66 5.43 -17.43 -0.09 0.57 16 3 Si 0.88 23.06 24.40 -169.99 -4.15 18.91 16 4 H -0.29 -7.21 6.83 56.52 0.39 -6.82 16 5 H -0.30 -8.03 7.11 56.52 0.40 -7.63 16 6 H -0.28 -7.18 6.90 56.52 0.39 -6.79 16 7 C -0.24 -6.99 10.56 -15.06 -0.16 -7.15 16 8 H 0.10 2.85 8.06 -52.48 -0.42 2.43 16 9 N -0.61 -14.86 3.20 -170.08 -0.55 -15.40 16 10 C 0.13 2.69 7.23 -2.53 -0.02 2.68 16 11 C -0.11 -1.81 6.26 -24.59 -0.15 -1.97 16 12 C 0.10 1.76 0.92 -88.79 -0.08 1.68 16 13 O -0.54 -9.03 13.09 -35.23 -0.46 -9.49 16 14 C 0.10 1.53 4.74 -4.05 -0.02 1.51 16 15 N -0.71 -10.40 5.19 -61.44 -0.32 -10.72 16 16 C 0.60 8.82 7.80 -12.60 -0.10 8.72 16 17 O -0.53 -8.77 16.71 5.25 0.09 -8.68 16 18 C 0.02 0.29 6.70 -84.51 -0.57 -0.28 16 19 C -0.22 -2.06 10.61 29.63 0.31 -1.74 16 20 S 0.29 1.98 22.96 -107.50 -2.47 -0.49 16 21 C 0.05 0.48 7.98 51.48 0.41 0.90 16 22 Cl 0.04 0.35 29.33 -51.86 -1.52 -1.17 16 23 N -0.43 -5.56 10.13 -9.45 -0.10 -5.66 16 24 C 0.10 2.19 4.24 -3.07 -0.01 2.18 16 25 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 26 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 29 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.37 5.17 7.78 45.56 0.35 5.53 16 31 H 0.09 1.32 8.06 -51.93 -0.42 0.90 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.41 5.93 6.78 -40.82 -0.28 5.66 16 34 H 0.20 1.50 8.03 -52.49 -0.42 1.08 16 35 H 0.03 0.69 3.47 -51.93 -0.18 0.51 16 36 H 0.05 1.09 7.76 -51.93 -0.40 0.68 16 LS Contribution 331.18 15.07 4.99 4.99 Total: -1.00 -34.80 331.18 -7.22 -42.03 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -3.04 Total: 6.04 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.48 Total: 7.08 kcal Atomic # 7 Polarization: -59.04 SS G_CDS: -0.18 Total: -59.22 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.37 Total: -18.17 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -4.15 Total: 18.91 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.47 Total: -0.49 kcal Atomic # 17 Polarization: 0.35 SS G_CDS: -1.52 Total: -1.17 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.80 -7.22 -42.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325141649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.001 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds