Wall clock time and date at job start Tue Mar 31 2020 16:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99875 * 2 1 4 4 H 1.48498 * 109.47128 * 264.64910 * 3 2 1 5 5 H 1.48497 * 109.47210 * 24.65020 * 3 2 1 6 6 H 1.48504 * 109.47215 * 144.65076 * 3 2 1 7 7 C 1.38808 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99500 * 336.12087 * 7 2 1 9 9 N 1.36933 * 120.00264 * 156.11415 * 7 2 1 10 10 C 1.47428 * 125.64769 * 161.72608 * 9 7 2 11 11 C 1.54903 * 104.83282 * 155.91208 * 10 9 7 12 12 C 1.55157 * 101.58343 * 37.00897 * 11 10 9 13 13 O 1.42895 * 110.71802 * 83.04056 * 12 11 10 14 14 C 1.52999 * 110.72109 * 206.13852 * 12 11 10 15 15 N 1.46494 * 109.47112 * 180.02562 * 14 12 11 16 16 C 1.34782 * 120.00079 * 179.72429 * 15 14 12 17 17 O 1.21632 * 119.99917 * 0.27281 * 16 15 14 18 18 C 1.47240 * 120.00015 * 180.27016 * 16 15 14 19 19 C 1.35153 * 123.13844 * 179.97438 * 18 16 15 20 20 S 1.70933 * 108.86334 * 179.97438 * 19 18 16 21 21 C 1.70762 * 91.14689 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 124.72524 * 179.97438 * 21 20 19 23 23 N 1.28768 * 110.55290 * 359.75898 * 21 20 19 24 24 C 1.47012 * 125.65118 * 341.77145 * 9 7 2 25 25 H 0.97001 * 120.00109 * 0.02562 * 1 2 3 26 26 H 1.09004 * 110.36430 * 37.06972 * 10 9 7 27 27 H 1.09005 * 110.46281 * 274.79692 * 10 9 7 28 28 H 1.09002 * 111.00522 * 278.93206 * 11 10 9 29 29 H 1.08998 * 111.00439 * 155.08801 * 11 10 9 30 30 H 0.96705 * 114.00181 * 182.44320 * 13 12 11 31 31 H 1.08997 * 109.47647 * 59.99880 * 14 12 11 32 32 H 1.09004 * 109.47112 * 299.99855 * 14 12 11 33 33 H 0.96999 * 119.99941 * 359.97438 * 15 14 12 34 34 H 1.07998 * 125.56660 * 359.93447 * 19 18 16 35 35 H 1.09004 * 109.88114 * 61.60636 * 24 9 7 36 36 H 1.08997 * 109.88933 * 300.44030 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.6107 1.9812 -1.3940 5 1 1.3956 2.6827 0.5839 6 1 3.4866 1.4755 0.8100 7 6 2.0103 -1.2021 0.0005 8 1 1.5396 -2.0972 0.3796 9 7 3.2916 -1.2530 -0.4796 10 6 4.2696 -2.3220 -0.2066 11 6 5.2601 -2.2665 -1.3963 12 6 5.3527 -0.7393 -1.6536 13 8 6.2949 -0.1333 -0.7665 14 6 5.7252 -0.4574 -3.1106 15 7 5.8056 0.9898 -3.3229 16 6 6.1268 1.4759 -4.5383 17 8 6.3450 0.7130 -5.4601 18 6 6.2134 2.9304 -4.7501 19 6 6.5304 3.4860 -5.9407 20 16 6.5253 5.1873 -5.7754 21 6 6.1012 5.0602 -4.1262 22 17 5.8591 6.4091 -3.0605 23 7 5.9815 3.8245 -3.7841 24 6 3.9203 -0.2505 -1.3519 25 1 -0.4850 0.8400 -0.0004 26 1 3.7722 -3.2913 -0.1718 27 1 4.7917 -2.1304 0.7309 28 1 4.8561 -2.7855 -2.2656 29 1 6.2309 -2.6751 -1.1157 30 1 6.3631 0.8267 -0.8610 31 1 4.9654 -0.8798 -3.7682 32 1 6.6910 -0.9111 -3.3330 33 1 5.6313 1.5983 -2.5878 34 1 6.7514 2.9437 -6.8481 35 1 3.9569 0.7128 -0.8432 36 1 3.3561 -0.1606 -2.2802 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325141649.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:38:26 Heat of formation + Delta-G solvation = -32.341253 kcal Electronic energy + Delta-G solvation = -23952.018452 eV Core-core repulsion = 20203.272180 eV Total energy + Delta-G solvation = -3748.746272 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 331.054 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84267 -40.71221 -39.63020 -38.04428 -36.99310 -35.48104 -34.35068 -32.02138 -31.64566 -30.26230 -28.11056 -26.78250 -25.39730 -23.72707 -22.27036 -21.70217 -21.15713 -20.39498 -19.22139 -18.52872 -17.95922 -17.59438 -16.93632 -16.88645 -16.57082 -16.02080 -15.88011 -15.58781 -15.28945 -15.22832 -15.00941 -14.50150 -14.43506 -13.88243 -13.65540 -13.33801 -13.19944 -13.06413 -12.98276 -12.62999 -12.53256 -12.24495 -12.17225 -11.98119 -11.61570 -11.43490 -11.17115 -11.03989 -10.90879 -10.81599 -10.43034 -10.03964 -9.14168 -8.24989 -5.49388 -0.80766 -0.45885 0.24251 0.54502 0.64889 1.20295 1.30544 1.39740 1.93159 2.05567 2.33568 2.89203 2.99006 3.00749 3.16472 3.50775 3.64108 3.70642 3.87227 3.95570 4.33548 4.36391 4.38750 4.49187 4.62309 4.72026 4.75842 4.95281 4.97516 5.12086 5.28674 5.61525 5.86871 6.04066 6.22711 6.51181 6.68885 6.85467 7.47115 8.03527 8.94952 Molecular weight = 331.05amu Principal moments of inertia in cm(-1) A = 0.012697 B = 0.004088 C = 0.003400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.677393 B = 6847.082090 C = 8232.642464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C -0.034 4.034 3 Si 0.945 3.055 4 H -0.274 1.274 5 H -0.309 1.309 6 H -0.274 1.274 7 C -0.236 4.236 8 H 0.067 0.933 9 N -0.624 5.624 10 C 0.126 3.874 11 C -0.101 4.101 12 C 0.119 3.881 13 O -0.548 6.548 14 C 0.112 3.888 15 N -0.711 5.711 16 C 0.597 3.403 17 O -0.555 6.555 18 C -0.010 4.010 19 C -0.219 4.219 20 S 0.397 5.603 21 C 0.016 3.984 22 Cl 0.035 6.965 23 N -0.463 5.463 24 C 0.096 3.904 25 H 0.262 0.738 26 H 0.057 0.943 27 H 0.028 0.972 28 H 0.103 0.897 29 H 0.111 0.889 30 H 0.381 0.619 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.408 0.592 34 H 0.217 0.783 35 H 0.017 0.983 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.513 12.706 -14.502 27.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.229 4.229 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.237 1.237 6 H -0.200 1.200 7 C -0.365 4.365 8 H 0.085 0.915 9 N -0.351 5.351 10 C 0.002 3.998 11 C -0.139 4.139 12 C 0.077 3.923 13 O -0.354 6.354 14 C -0.012 4.012 15 N -0.362 5.362 16 C 0.381 3.619 17 O -0.434 6.434 18 C -0.145 4.145 19 C -0.362 4.362 20 S 0.650 5.350 21 C -0.287 4.287 22 Cl 0.062 6.938 23 N -0.182 5.182 24 C -0.029 4.029 25 H 0.072 0.928 26 H 0.075 0.925 27 H 0.046 0.954 28 H 0.122 0.878 29 H 0.130 0.870 30 H 0.229 0.771 31 H 0.099 0.901 32 H 0.118 0.882 33 H 0.244 0.756 34 H 0.234 0.766 35 H 0.034 0.966 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 19.534 12.426 -14.867 27.513 hybrid contribution -0.776 0.864 1.157 1.639 sum 18.757 13.290 -13.710 26.766 Atomic orbital electron populations 1.69967 1.06989 1.27192 1.55518 1.25556 0.95780 1.00425 1.01179 0.85953 0.77678 0.80690 0.78100 1.20086 1.23745 1.19984 1.18674 0.87014 0.94751 1.36057 0.91544 1.44844 1.10479 1.24545 1.55245 1.21839 0.89753 0.91755 0.96477 1.22767 1.00930 0.90827 0.99393 1.22345 0.86037 0.96242 0.87660 1.86542 1.61275 1.25812 1.61781 1.22027 1.03841 0.80206 0.95092 1.45811 1.69512 1.08665 1.12237 1.17174 0.76354 0.85862 0.82503 1.90804 1.51783 1.58470 1.42305 1.19951 1.10289 0.93975 0.90273 1.27224 1.03670 1.01614 1.03670 1.82636 1.56016 0.97496 0.98840 1.27498 1.09624 0.92563 0.99037 1.98457 1.95072 1.35895 1.64327 1.66592 1.16092 1.00510 1.34994 1.22409 0.94099 0.92680 0.93739 0.92850 0.92516 0.95367 0.87847 0.87034 0.77062 0.90117 0.88156 0.75641 0.76601 0.96579 0.94910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.07 13.97 21.65 0.30 -60.77 16 2 C -0.03 -2.08 5.43 84.86 0.46 -1.62 16 3 Si 0.95 48.79 24.40 68.60 1.67 50.46 16 4 H -0.27 -13.43 6.83 99.48 0.68 -12.75 16 5 H -0.31 -16.07 7.11 99.48 0.71 -15.36 16 6 H -0.27 -13.77 6.90 99.48 0.69 -13.09 16 7 C -0.24 -13.93 10.56 84.03 0.89 -13.04 16 8 H 0.07 4.18 8.06 -2.91 -0.02 4.16 16 9 N -0.62 -30.58 3.20 -692.01 -2.22 -32.80 16 10 C 0.13 4.89 7.23 86.85 0.63 5.51 16 11 C -0.10 -2.95 6.26 31.98 0.20 -2.75 16 12 C 0.12 3.78 0.92 -9.61 -0.01 3.77 16 13 O -0.55 -16.82 13.09 -148.98 -1.95 -18.77 16 14 C 0.11 3.09 4.74 86.38 0.41 3.50 16 15 N -0.71 -19.95 5.19 -466.55 -2.42 -22.38 16 16 C 0.60 16.89 7.80 86.61 0.68 17.56 16 17 O -0.55 -17.64 16.71 -4.13 -0.07 -17.71 16 18 C -0.01 -0.23 6.70 40.52 0.27 0.04 16 19 C -0.22 -3.49 10.61 67.11 0.71 -2.77 16 20 S 0.40 4.18 22.96 -56.49 -1.30 2.88 16 21 C 0.02 0.30 7.98 130.69 1.04 1.34 16 22 Cl 0.03 0.61 29.33 -2.72 -0.08 0.53 16 23 N -0.46 -11.34 10.13 -183.80 -1.86 -13.20 16 24 C 0.10 4.10 4.24 86.73 0.37 4.47 16 25 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 26 H 0.06 2.13 8.14 -2.38 -0.02 2.11 16 27 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 28 H 0.10 2.70 8.05 -2.39 -0.02 2.68 16 29 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.38 9.87 7.78 -74.05 -0.58 9.29 16 31 H 0.08 2.34 8.06 -2.39 -0.02 2.32 16 32 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 33 H 0.41 11.43 6.78 -92.71 -0.63 10.80 16 34 H 0.22 2.59 8.03 -2.91 -0.02 2.57 16 35 H 0.02 0.76 3.47 -2.38 -0.01 0.75 16 36 H 0.03 1.50 7.76 -2.39 -0.02 1.48 16 Total: -1.00 -76.99 331.18 -2.37 -79.36 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.09 Total: 16.39 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 5.65 Total: 16.00 kcal Atomic # 7 Polarization: -122.94 SS G_CDS: -6.20 Total: -129.14 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -2.02 Total: -36.48 kcal Atomic # 14 Polarization: 48.79 SS G_CDS: 1.67 Total: 50.46 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.30 Total: 2.88 kcal Atomic # 17 Polarization: 0.61 SS G_CDS: -0.08 Total: 0.53 kcal Total: -76.99 -2.37 -79.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325141649.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.020 kcal (2) G-P(sol) polarization free energy of solvation -76.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds