Wall clock time and date at job start Tue Mar 31 2020 16:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.33914 * 125.60593 * 2 1 4 4 C 1.34935 * 109.37768 * 180.24223 * 3 2 1 5 5 C 1.46471 * 125.99595 * 179.75163 * 4 3 2 6 6 O 1.21620 * 119.99791 * 180.02562 * 5 4 3 7 7 O 1.34892 * 120.00060 * 0.02562 * 5 4 3 8 8 C 1.45203 * 117.00293 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.47288 * 180.02562 * 8 7 5 10 10 O 1.21288 * 120.00004 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99708 * 180.02562 * 9 8 7 12 12 C 1.37100 * 119.99590 * 180.02562 * 11 9 8 13 13 H 1.08002 * 120.00330 * 359.97438 * 12 11 9 14 14 C 1.38951 * 119.99850 * 179.97438 * 12 11 9 15 15 N 1.31415 * 119.99883 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 119.99975 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47054 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47241 * 120.00102 * 16 14 12 19 19 H 1.48501 * 109.46870 * 240.00135 * 16 14 12 20 20 C 1.36640 * 108.01099 * 359.76571 * 4 3 2 21 21 C 1.35171 * 125.60835 * 179.83722 * 2 1 3 22 22 S 1.76198 * 126.43763 * 0.03223 * 21 2 1 23 23 C 1.81395 * 104.44778 * 294.71338 * 22 21 2 24 24 O 1.42105 * 104.27617 * 178.64035 * 22 21 2 25 25 O 1.42101 * 104.27776 * 50.78486 * 22 21 2 26 26 H 1.08996 * 109.47014 * 270.15927 * 1 2 3 27 27 H 1.08996 * 109.47055 * 30.16634 * 1 2 3 28 28 H 1.09003 * 109.47029 * 150.16723 * 1 2 3 29 29 H 1.09000 * 109.47166 * 300.00925 * 8 7 5 30 30 H 1.09001 * 109.46602 * 60.00619 * 8 7 5 31 31 H 0.96997 * 120.00283 * 0.02562 * 11 9 8 32 32 H 0.96997 * 119.99390 * 180.02562 * 15 14 12 33 33 H 1.08000 * 126.65258 * 180.02562 * 20 4 3 34 34 H 1.09003 * 109.47393 * 299.99698 * 23 22 21 35 35 H 1.08994 * 109.47678 * 60.00314 * 23 22 21 36 36 H 1.09002 * 109.47051 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2867 1.0888 0.0000 4 6 3.5823 0.7117 -0.0054 5 6 4.7400 1.6089 -0.0123 6 8 5.8658 1.1489 -0.0172 7 8 4.5575 2.9454 -0.0132 8 6 5.7501 3.7737 -0.0196 9 6 5.3523 5.2272 -0.0191 10 8 4.1791 5.5349 -0.0133 11 7 6.3002 6.1853 -0.0249 12 6 5.9383 7.5076 -0.0239 13 1 4.8936 7.7816 -0.0188 14 6 6.9156 8.4954 -0.0295 15 7 8.1867 8.1620 -0.0352 16 14 6.4225 10.2971 -0.0288 17 1 4.9414 10.4050 -0.0225 18 1 6.9728 10.9605 1.1805 19 1 6.9613 10.9582 -1.2445 20 6 3.6248 -0.6541 -0.0036 21 6 2.2940 -1.0990 0.0031 22 16 1.7509 -2.7751 0.0071 23 6 0.9120 -2.9753 1.6029 24 8 2.9526 -3.5330 -0.0231 25 8 0.8151 -2.8428 -1.0601 26 1 -0.3633 0.0029 1.0276 27 1 -0.3633 0.8885 -0.5164 28 1 -0.3633 -0.8915 -0.5112 29 1 6.3457 3.5599 0.8679 30 1 6.3375 3.5578 -0.9120 31 1 7.2384 5.9392 -0.0299 32 1 8.8688 8.8516 -0.0387 33 1 4.5109 -1.2715 -0.0063 34 1 1.6153 -2.7735 2.4109 35 1 0.0774 -2.2770 1.6648 36 1 0.5397 -3.9958 1.6922 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329929190.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:58 Heat of formation + Delta-G solvation = -167.329275 kcal Electronic energy + Delta-G solvation = -25141.428288 eV Core-core repulsion = 20913.826581 eV Total energy + Delta-G solvation = -4227.601708 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -43.29926 -40.25829 -38.19471 -37.51704 -36.37321 -36.32409 -34.12280 -34.02676 -32.73844 -31.42859 -30.02001 -29.09463 -27.62060 -24.79648 -23.48053 -22.66641 -21.27401 -19.65960 -19.40033 -18.65677 -18.12597 -17.30392 -16.85780 -16.58881 -16.38597 -16.24252 -16.11418 -15.93737 -15.40476 -14.61117 -14.17947 -14.06607 -13.94098 -13.84051 -13.76513 -13.58865 -13.45041 -13.13872 -12.79427 -12.48971 -12.43596 -12.33946 -12.16495 -11.78814 -11.65862 -11.45169 -11.18467 -10.97228 -10.92498 -10.57784 -10.41785 -10.33645 -9.65615 -9.22936 -8.58377 -8.12381 -6.53577 -3.95719 -0.39901 0.45910 1.19958 1.90985 2.39823 2.63838 2.65023 3.09189 3.21728 3.28989 3.36452 3.63563 3.68448 3.88260 4.06601 4.19678 4.24541 4.52098 4.56384 4.75236 4.78227 4.97065 5.01049 5.03460 5.09938 5.10794 5.38703 5.45531 5.60682 5.67686 5.96082 6.20882 6.31005 7.44763 7.55204 7.90127 8.43971 9.03350 9.34747 9.84332 10.63637 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.034287 B = 0.002126 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.431823 B =13169.297527 C =13766.831522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.159 3.841 3 O -0.130 6.130 4 C -0.054 4.054 5 C 0.548 3.452 6 O -0.485 6.485 7 O -0.313 6.313 8 C 0.060 3.940 9 C 0.438 3.562 10 O -0.575 6.575 11 N -0.551 5.551 12 C -0.302 4.302 13 H 0.107 0.893 14 C 0.025 3.975 15 N -0.896 5.896 16 Si 0.934 3.066 17 H -0.267 1.267 18 H -0.280 1.280 19 H -0.280 1.280 20 C -0.028 4.028 21 C -0.766 4.766 22 S 2.530 3.470 23 C -0.652 4.652 24 O -0.931 6.931 25 O -0.933 6.933 26 H 0.107 0.893 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.395 0.605 32 H 0.274 0.726 33 H 0.182 0.818 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.791 -22.106 3.787 26.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.101 3.899 3 O -0.023 6.023 4 C -0.104 4.104 5 C 0.392 3.608 6 O -0.375 6.375 7 O -0.227 6.227 8 C -0.017 4.017 9 C 0.222 3.778 10 O -0.459 6.459 11 N -0.188 5.188 12 C -0.431 4.431 13 H 0.125 0.875 14 C -0.178 4.178 15 N -0.536 5.536 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.048 4.048 21 C -0.852 4.852 22 S 2.706 3.294 23 C -0.802 4.802 24 O -0.929 6.929 25 O -0.931 6.931 26 H 0.125 0.875 27 H 0.125 0.875 28 H 0.135 0.865 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.229 0.771 32 H 0.084 0.916 33 H 0.200 0.800 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.989 -22.071 3.134 26.318 hybrid contribution 0.745 1.409 0.597 1.702 sum -13.244 -20.662 3.731 24.824 Atomic orbital electron populations 1.21138 0.83221 1.07795 1.05709 1.22802 0.94388 0.82887 0.89829 1.84211 1.16093 1.34155 1.67805 1.20936 0.80924 0.92692 1.15879 1.19116 0.85982 0.81915 0.73830 1.90963 1.22467 1.77556 1.46468 1.86707 1.37650 1.15776 1.82566 1.22900 0.84644 0.90203 1.03993 1.19243 0.87082 0.85222 0.86238 1.90573 1.17714 1.82352 1.55232 1.41699 1.07945 1.05494 1.63700 1.19778 0.95106 0.80081 1.48163 0.87537 1.25329 0.94725 1.00897 0.96832 1.69623 0.99556 1.34906 1.49562 0.85729 0.79066 0.81300 0.77835 1.19085 1.20586 1.20581 1.21512 0.96605 0.91998 0.94670 1.31499 1.01476 1.23632 1.28573 1.04470 0.75220 0.72718 0.77038 1.30254 1.14930 1.12126 1.22932 1.93589 1.44644 1.68027 1.86608 1.93592 1.64313 1.85398 1.49760 0.87518 0.87528 0.86523 0.89018 0.89004 0.77095 0.91622 0.80025 0.84565 0.84964 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.60 9.85 36.01 0.35 -0.24 16 2 C 0.16 1.50 7.31 -35.40 -0.26 1.24 16 3 O -0.13 -1.75 10.67 4.74 0.05 -1.70 16 4 C -0.05 -0.78 7.18 -36.84 -0.26 -1.04 16 5 C 0.55 9.19 7.93 34.05 0.27 9.46 16 6 O -0.48 -8.46 16.66 -19.36 -0.32 -8.78 16 7 O -0.31 -6.04 9.77 -48.34 -0.47 -6.52 16 8 C 0.06 1.14 5.96 36.01 0.21 1.35 16 9 C 0.44 10.53 7.86 -10.99 -0.09 10.45 16 10 O -0.57 -16.05 16.08 -14.11 -0.23 -16.28 16 11 N -0.55 -13.84 5.29 -10.96 -0.06 -13.90 16 12 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 13 H 0.11 3.06 7.16 -52.49 -0.38 2.69 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -23.88 13.05 55.50 0.72 -23.15 16 16 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 17 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 C -0.03 -0.33 10.21 -39.38 -0.40 -0.74 16 21 C -0.77 -7.27 5.82 -39.89 -0.23 -7.50 16 22 S 2.53 17.96 5.59 -107.50 -0.60 17.36 16 23 C -0.65 -1.48 10.79 101.05 1.09 -0.39 16 24 O -0.93 -9.94 17.64 -57.54 -1.01 -10.95 16 25 O -0.93 -8.82 16.48 -57.54 -0.95 -9.77 16 26 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 27 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.12 0.44 6.50 -51.93 -0.34 0.10 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.09 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.40 9.36 7.90 -40.82 -0.32 9.04 16 32 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 33 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 34 H 0.14 0.20 8.14 -51.92 -0.42 -0.23 16 35 H 0.13 0.02 7.79 -51.93 -0.40 -0.38 16 36 H 0.14 0.08 8.14 -51.92 -0.42 -0.34 16 LS Contribution 344.75 15.07 5.20 5.20 Total: -1.00 -38.25 344.75 -5.79 -44.04 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -3.53 Total: 4.19 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 0.45 Total: 4.71 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.67 Total: -37.05 kcal Atomic # 8 Polarization: -51.06 SS G_CDS: -2.93 Total: -53.99 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 17.96 SS G_CDS: -0.60 Total: 17.36 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -38.25 -5.79 -44.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329929190.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.290 kcal (2) G-P(sol) polarization free energy of solvation -38.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds