Wall clock time and date at job start Tue Mar 31 2020 16:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34823 * 116.99901 * 2 1 4 4 O 1.21533 * 120.00150 * 359.97438 * 3 2 1 5 5 C 1.47134 * 119.99639 * 179.97438 * 3 2 1 6 6 C 1.36641 * 125.81280 * 179.97438 * 5 3 2 7 7 C 1.40045 * 106.91840 * 179.97438 * 6 5 3 8 8 C 1.36571 * 106.93594 * 0.02562 * 7 6 5 9 9 C 1.47327 * 125.80045 * 180.02562 * 8 7 6 10 10 O 1.21604 * 119.99557 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00212 * 179.97438 * 9 8 7 12 12 S 1.65597 * 119.99811 * 179.97438 * 11 9 8 13 13 O 1.42106 * 104.27734 * 181.07295 * 12 11 9 14 14 O 1.42099 * 104.27687 * 308.92472 * 12 11 9 15 15 C 1.81393 * 104.45120 * 65.00128 * 12 11 9 16 16 C 1.53003 * 109.47213 * 180.02562 * 15 12 11 17 17 C 1.50704 * 109.47223 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99635 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99877 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99616 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47292 * 59.99830 * 21 19 17 23 23 H 1.48501 * 109.46993 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47329 * 299.99319 * 21 19 17 25 25 O 1.34533 * 108.40508 * 359.97438 * 8 7 6 26 26 H 1.09006 * 109.46805 * 60.00368 * 1 2 3 27 27 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47611 * 300.00771 * 1 2 3 29 29 H 1.08007 * 126.54042 * 0.24022 * 6 5 3 30 30 H 1.08000 * 126.52921 * 180.02562 * 7 6 5 31 31 H 0.96994 * 120.00014 * 359.97438 * 11 9 8 32 32 H 1.09007 * 109.46889 * 299.99528 * 15 12 11 33 33 H 1.08999 * 109.47491 * 59.99589 * 15 12 11 34 34 H 1.09007 * 109.46573 * 299.99434 * 16 15 12 35 35 H 1.08992 * 109.47650 * 59.99598 * 16 15 12 36 36 H 0.97000 * 120.00004 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4021 2.2206 -0.0005 5 6 3.5333 1.2782 0.0006 6 6 4.2739 2.4266 0.0001 7 6 5.6207 2.0430 0.0016 8 6 5.6455 0.6775 0.0022 9 6 6.8559 -0.1625 0.0042 10 8 7.9558 0.3561 0.0050 11 7 6.7440 -1.5056 0.0052 12 16 8.1045 -2.4497 0.0069 13 8 7.6075 -3.7807 -0.0182 14 8 8.8864 -1.9394 -1.0644 15 6 8.8986 -2.0966 1.5991 16 6 10.1833 -2.9185 1.7217 17 6 10.8427 -2.6256 3.0448 18 1 10.3908 -1.9233 3.7295 19 6 12.0227 -3.2544 3.3811 20 7 12.5727 -4.1101 2.5475 21 14 12.8403 -2.8909 5.0208 22 1 11.9151 -3.2496 6.1256 23 1 14.0865 -3.6896 5.1404 24 1 13.1691 -1.4449 5.1002 25 8 4.3769 0.2297 0.0018 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 3.8931 3.4373 0.0030 30 1 6.4767 2.7016 0.0020 31 1 5.8667 -1.9192 0.0050 32 1 9.1398 -1.0352 1.6573 33 1 8.2196 -2.3599 2.4101 34 1 9.9424 -3.9800 1.6633 35 1 10.8621 -2.6548 0.9108 36 1 13.4027 -4.5527 2.7842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337264359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:07 Heat of formation + Delta-G solvation = -172.547502 kcal Electronic energy + Delta-G solvation = -25368.287799 eV Core-core repulsion = 21140.459812 eV Total energy + Delta-G solvation = -4227.827987 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 3.96 seconds Orbital eigenvalues (eV) -43.43502 -40.80333 -40.06647 -37.15133 -36.80926 -35.74005 -34.84350 -33.95159 -33.69042 -31.29364 -31.20389 -28.40683 -25.76006 -25.48658 -23.17294 -21.97537 -21.73166 -21.12455 -19.65919 -19.31782 -18.54173 -17.71157 -17.55030 -17.49219 -16.66090 -16.49821 -15.79589 -15.67850 -15.12055 -14.88498 -14.67909 -14.57029 -13.92364 -13.80868 -13.73640 -13.66337 -13.50905 -12.73599 -12.62772 -12.50857 -11.87411 -11.81750 -11.72683 -11.53405 -11.41079 -11.16251 -11.07978 -11.04084 -10.90742 -10.73230 -10.45509 -10.40244 -9.76588 -9.48799 -9.24015 -8.51786 -6.14296 -4.20110 -0.13807 0.34399 1.15419 1.52306 2.19412 2.23440 2.40168 2.59161 3.27301 3.32004 3.33900 3.69792 3.97371 4.17612 4.20962 4.35555 4.49455 4.57640 4.66663 4.67983 4.82226 4.87658 5.02921 5.20969 5.22168 5.49924 5.57510 5.60706 5.63868 5.94888 6.37707 6.43970 6.97425 7.03693 7.24550 7.30817 7.78345 8.13410 8.82572 9.44623 10.96716 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.002566 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.299607 B =10908.094906 C =11182.469222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.345 6.345 3 C 0.553 3.447 4 O -0.478 6.478 5 C -0.029 4.029 6 C -0.114 4.114 7 C -0.125 4.125 8 C -0.032 4.032 9 C 0.626 3.374 10 O -0.456 6.456 11 N -1.050 6.050 12 S 2.562 3.438 13 O -0.946 6.946 14 O -0.933 6.933 15 C -0.574 4.574 16 C 0.030 3.970 17 C -0.521 4.521 18 H 0.062 0.938 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.285 1.285 24 H -0.275 1.275 25 O -0.136 6.136 26 H 0.068 0.932 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.177 0.823 30 H 0.181 0.819 31 H 0.434 0.566 32 H 0.133 0.867 33 H 0.124 0.876 34 H 0.035 0.965 35 H 0.037 0.963 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.392 10.879 -4.845 26.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.260 6.260 3 C 0.397 3.603 4 O -0.366 6.366 5 C -0.081 4.081 6 C -0.134 4.134 7 C -0.145 4.145 8 C -0.088 4.088 9 C 0.410 3.590 10 O -0.327 6.327 11 N -0.810 5.810 12 S 2.662 3.338 13 O -0.936 6.936 14 O -0.923 6.923 15 C -0.709 4.709 16 C -0.010 4.010 17 C -0.560 4.560 18 H 0.080 0.920 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.729 3.271 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.200 1.200 25 O -0.032 6.032 26 H 0.087 0.913 27 H 0.127 0.873 28 H 0.087 0.913 29 H 0.194 0.806 30 H 0.198 0.802 31 H 0.270 0.730 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.547 10.532 -5.642 25.517 hybrid contribution -0.287 0.386 1.403 1.483 sum -22.834 10.918 -4.239 25.663 Atomic orbital electron populations 1.23440 0.74681 1.04583 1.03043 1.86661 1.24476 1.31294 1.83607 1.19244 0.85185 0.82425 0.73452 1.90958 1.64042 1.35942 1.45701 1.21048 0.88102 0.86167 1.12783 1.22066 0.91853 0.99350 1.00121 1.22135 0.98350 0.93269 1.00755 1.22381 0.82519 0.94316 1.09555 1.16464 0.86481 0.81145 0.74866 1.91106 1.23985 1.72472 1.45109 1.55479 1.29463 1.16260 1.79807 1.06967 0.73489 0.73568 0.79734 1.93610 1.78325 1.33544 1.88150 1.93612 1.67816 1.79311 1.51548 1.30355 1.12104 1.12205 1.16213 1.19008 0.87533 0.94256 1.00154 1.20928 1.07513 1.26043 1.01543 0.91954 1.25059 0.96964 0.94851 0.97552 1.69938 1.19500 1.27375 1.35975 0.86497 0.78725 0.78495 0.83366 1.20072 1.21060 1.20008 1.84124 1.14778 1.34553 1.69698 0.91312 0.87288 0.91289 0.80570 0.80201 0.72972 0.84916 0.85737 0.94644 0.94449 0.92405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.17 10.57 101.05 1.07 1.24 16 2 O -0.34 -2.87 10.58 -42.25 -0.45 -3.32 16 3 C 0.55 5.14 7.95 34.34 0.27 5.42 16 4 O -0.48 -5.05 16.65 -19.29 -0.32 -5.37 16 5 C -0.03 -0.27 7.19 -36.55 -0.26 -0.53 16 6 C -0.11 -0.89 10.60 -39.48 -0.42 -1.31 16 7 C -0.12 -1.09 10.59 -39.51 -0.42 -1.51 16 8 C -0.03 -0.34 7.14 -36.49 -0.26 -0.60 16 9 C 0.63 8.26 7.55 -12.56 -0.09 8.17 16 10 O -0.46 -7.34 14.96 -11.85 -0.18 -7.52 16 11 N -1.05 -13.41 5.60 30.41 0.17 -13.24 16 12 S 2.56 44.88 5.11 -107.50 -0.55 44.33 16 13 O -0.95 -18.16 18.08 -57.54 -1.04 -19.20 16 14 O -0.93 -19.55 17.04 -64.79 -1.10 -20.65 16 15 C -0.57 -10.91 5.82 37.16 0.22 -10.69 16 16 C 0.03 0.75 4.98 -27.88 -0.14 0.61 16 17 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 O -0.14 -1.36 10.41 4.11 0.04 -1.32 16 26 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.11 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.18 0.97 8.06 -52.48 -0.42 0.55 16 30 H 0.18 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.43 4.08 8.55 -34.47 -0.29 3.79 16 32 H 0.13 2.43 7.19 -51.92 -0.37 2.05 16 33 H 0.12 2.02 8.14 -51.92 -0.42 1.60 16 34 H 0.04 0.92 8.14 -51.92 -0.42 0.50 16 35 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 346.27 15.07 5.22 5.22 Total: -1.00 -36.42 346.27 -6.53 -42.95 By element: Atomic # 1 Polarization: 3.37 SS G_CDS: -3.59 Total: -0.22 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: -0.45 Total: -12.24 kcal Atomic # 7 Polarization: -39.64 SS G_CDS: 0.91 Total: -38.73 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -3.05 Total: -57.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 44.88 SS G_CDS: -0.55 Total: 44.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -36.42 -6.53 -42.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337264359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.600 kcal (2) G-P(sol) polarization free energy of solvation -36.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.96 seconds