Wall clock time and date at job start Tue Mar 31 2020 16:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34823 * 116.99901 * 2 1 4 4 O 1.21533 * 120.00150 * 359.97438 * 3 2 1 5 5 C 1.47134 * 119.99639 * 179.97438 * 3 2 1 6 6 C 1.36641 * 125.81280 * 179.97438 * 5 3 2 7 7 C 1.40045 * 106.91840 * 179.97438 * 6 5 3 8 8 C 1.36571 * 106.93594 * 0.02562 * 7 6 5 9 9 C 1.47327 * 125.80045 * 180.02562 * 8 7 6 10 10 O 1.21604 * 119.99557 * 359.97438 * 9 8 7 11 11 N 1.34773 * 120.00212 * 179.97438 * 9 8 7 12 12 S 1.65597 * 119.99811 * 179.97438 * 11 9 8 13 13 O 1.42106 * 104.27734 * 181.07295 * 12 11 9 14 14 O 1.42099 * 104.27687 * 308.92472 * 12 11 9 15 15 C 1.81393 * 104.45120 * 65.00128 * 12 11 9 16 16 C 1.53003 * 109.47213 * 180.02562 * 15 12 11 17 17 C 1.50704 * 109.47223 * 180.02562 * 16 15 12 18 18 H 1.07996 * 119.99635 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99877 * 179.97438 * 17 16 15 20 20 N 1.31509 * 120.00271 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99616 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47292 * 59.99830 * 21 19 17 23 23 H 1.48501 * 109.46993 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47329 * 299.99319 * 21 19 17 25 25 O 1.34533 * 108.40508 * 359.97438 * 8 7 6 26 26 H 1.09006 * 109.46805 * 60.00368 * 1 2 3 27 27 H 1.08999 * 109.47338 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47611 * 300.00771 * 1 2 3 29 29 H 1.08007 * 126.54042 * 0.24022 * 6 5 3 30 30 H 1.08000 * 126.52921 * 180.02562 * 7 6 5 31 31 H 0.96994 * 120.00014 * 359.97438 * 11 9 8 32 32 H 1.09007 * 109.46889 * 299.99528 * 15 12 11 33 33 H 1.08999 * 109.47491 * 59.99589 * 15 12 11 34 34 H 1.09007 * 109.46573 * 299.99434 * 16 15 12 35 35 H 1.08992 * 109.47650 * 59.99598 * 16 15 12 36 36 H 0.97000 * 120.00004 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0640 1.2013 0.0000 4 8 1.4021 2.2206 -0.0005 5 6 3.5333 1.2782 0.0006 6 6 4.2739 2.4266 0.0001 7 6 5.6207 2.0430 0.0016 8 6 5.6455 0.6775 0.0022 9 6 6.8559 -0.1625 0.0042 10 8 7.9558 0.3561 0.0050 11 7 6.7440 -1.5056 0.0052 12 16 8.1045 -2.4497 0.0069 13 8 7.6075 -3.7807 -0.0182 14 8 8.8864 -1.9394 -1.0644 15 6 8.8986 -2.0966 1.5991 16 6 10.1833 -2.9185 1.7217 17 6 10.8427 -2.6256 3.0448 18 1 10.3908 -1.9233 3.7295 19 6 12.0227 -3.2544 3.3811 20 7 12.5727 -4.1101 2.5475 21 14 12.8403 -2.8909 5.0208 22 1 11.9151 -3.2496 6.1256 23 1 14.0865 -3.6896 5.1404 24 1 13.1691 -1.4449 5.1002 25 8 4.3769 0.2297 0.0018 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 3.8931 3.4373 0.0030 30 1 6.4767 2.7016 0.0020 31 1 5.8667 -1.9192 0.0050 32 1 9.1398 -1.0352 1.6573 33 1 8.2196 -2.3599 2.4101 34 1 9.9424 -3.9800 1.6633 35 1 10.8621 -2.6548 0.9108 36 1 13.4027 -4.5527 2.7842 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337264359.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:03 Heat of formation + Delta-G solvation = -200.195301 kcal Electronic energy + Delta-G solvation = -25369.486697 eV Core-core repulsion = 21140.459812 eV Total energy + Delta-G solvation = -4229.026886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 331.070 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.17213 -41.51841 -41.12358 -38.35552 -37.80479 -37.29826 -36.03341 -35.86495 -34.43763 -33.18174 -32.01253 -28.91967 -27.65605 -26.37167 -24.00371 -23.56799 -22.78074 -21.89355 -20.87274 -20.29226 -19.44392 -19.17614 -18.41015 -18.21936 -18.20851 -17.47971 -17.08710 -16.93779 -16.55962 -16.42198 -16.07656 -15.29362 -15.21095 -14.67445 -14.47895 -14.39534 -14.37247 -14.31840 -13.93692 -13.77235 -13.42604 -13.31947 -13.15762 -12.92497 -12.85101 -12.42713 -12.32023 -12.22594 -12.12774 -12.01130 -11.94280 -11.73727 -11.40250 -11.11922 -10.63312 -10.24640 -8.25867 -6.39650 -1.12830 -0.91657 0.37562 0.79215 1.20610 1.42038 1.45476 1.46301 1.53532 1.59408 1.64099 2.37546 2.50202 2.80703 3.07459 3.09241 3.47589 3.53911 3.70372 3.96744 4.02296 4.10780 4.15336 4.25161 4.33608 4.64333 4.69356 4.72187 4.92632 5.01235 5.15692 5.24187 5.26400 5.50939 5.67881 5.99622 6.05400 6.34023 6.72873 7.30216 8.86233 Molecular weight = 331.07amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.002566 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.299607 B =10908.094906 C =11182.469222 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.556 3.444 4 O -0.494 6.494 5 C -0.034 4.034 6 C -0.103 4.103 7 C -0.108 4.108 8 C -0.051 4.051 9 C 0.629 3.371 10 O -0.488 6.488 11 N -1.034 6.034 12 S 2.598 3.402 13 O -0.963 6.963 14 O -0.969 6.969 15 C -0.576 4.576 16 C 0.022 3.978 17 C -0.540 4.540 18 H 0.076 0.924 19 C -0.002 4.002 20 N -0.932 5.932 21 Si 0.974 3.026 22 H -0.262 1.262 23 H -0.284 1.284 24 H -0.265 1.265 25 O -0.141 6.141 26 H 0.073 0.927 27 H 0.133 0.867 28 H 0.073 0.927 29 H 0.202 0.798 30 H 0.197 0.803 31 H 0.451 0.549 32 H 0.141 0.859 33 H 0.154 0.846 34 H 0.016 0.984 35 H 0.009 0.991 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.224 12.417 -3.739 28.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.270 6.270 3 C 0.400 3.600 4 O -0.383 6.383 5 C -0.087 4.087 6 C -0.122 4.122 7 C -0.128 4.128 8 C -0.107 4.107 9 C 0.416 3.584 10 O -0.361 6.361 11 N -0.799 5.799 12 S 2.698 3.302 13 O -0.953 6.953 14 O -0.959 6.959 15 C -0.710 4.710 16 C -0.017 4.017 17 C -0.579 4.579 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.572 5.572 21 Si 0.797 3.203 22 H -0.186 1.186 23 H -0.209 1.209 24 H -0.190 1.190 25 O -0.037 6.037 26 H 0.091 0.909 27 H 0.151 0.849 28 H 0.091 0.909 29 H 0.219 0.781 30 H 0.215 0.785 31 H 0.291 0.709 32 H 0.159 0.841 33 H 0.172 0.828 34 H 0.035 0.965 35 H 0.027 0.973 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -24.410 12.049 -4.525 27.596 hybrid contribution 0.103 -0.055 1.002 1.009 sum -24.308 11.994 -3.523 27.334 Atomic orbital electron populations 1.23756 0.72851 1.06406 1.03493 1.86654 1.26347 1.30808 1.83177 1.19243 0.85162 0.82515 0.73048 1.90950 1.64336 1.36427 1.46624 1.21314 0.88264 0.86497 1.12580 1.22381 0.91057 1.00123 0.98630 1.22452 0.99378 0.92551 0.98409 1.21899 0.82014 0.94416 1.12351 1.16692 0.87028 0.80880 0.73771 1.91094 1.25453 1.72839 1.46703 1.54919 1.29073 1.16189 1.79687 1.05585 0.73449 0.72968 0.78239 1.93582 1.78771 1.34965 1.88029 1.93565 1.69638 1.79994 1.52682 1.30242 1.10212 1.11601 1.18896 1.18848 0.89958 0.94191 0.98711 1.21448 1.07940 1.26004 1.02543 0.90627 1.26092 0.97822 0.94573 1.01610 1.70081 1.20104 1.28718 1.38268 0.85366 0.77646 0.78623 0.78635 1.18624 1.20915 1.18998 1.84095 1.14497 1.34925 1.70177 0.90870 0.84870 0.90872 0.78052 0.78544 0.70899 0.84071 0.82770 0.96543 0.97289 0.92316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.57 113.37 1.20 1.41 16 2 O -0.35 -5.31 10.58 -56.00 -0.59 -5.91 16 3 C 0.56 9.36 7.95 70.16 0.56 9.92 16 4 O -0.49 -9.56 16.65 19.73 0.33 -9.23 16 5 C -0.03 -0.57 7.19 24.23 0.17 -0.39 16 6 C -0.10 -1.32 10.60 22.33 0.24 -1.08 16 7 C -0.11 -1.62 10.59 22.32 0.24 -1.38 16 8 C -0.05 -1.00 7.14 24.27 0.17 -0.82 16 9 C 0.63 15.94 7.55 86.64 0.65 16.59 16 10 O -0.49 -15.43 14.96 12.33 0.18 -15.24 16 11 N -1.03 -25.37 5.60 -175.97 -0.99 -26.36 16 12 S 2.60 91.13 5.11 -56.49 -0.29 90.84 16 13 O -0.96 -36.90 18.08 -127.65 -2.31 -39.21 16 14 O -0.97 -41.34 17.04 -120.72 -2.06 -43.40 16 15 C -0.58 -21.83 5.82 71.98 0.42 -21.41 16 16 C 0.02 1.14 4.98 29.85 0.15 1.29 16 17 C -0.54 -29.81 9.11 25.60 0.23 -29.57 16 18 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 19 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 20 N -0.93 -56.31 13.29 21.45 0.28 -56.03 16 21 Si 0.97 43.12 29.54 68.60 2.03 45.14 16 22 H -0.26 -10.93 7.11 99.48 0.71 -10.23 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 O -0.14 -2.57 10.41 -7.21 -0.08 -2.64 16 26 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 27 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.07 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.20 1.51 8.06 -2.91 -0.02 1.48 16 30 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 31 H 0.45 7.83 8.55 -96.75 -0.83 7.01 16 32 H 0.14 5.12 7.19 -2.39 -0.02 5.10 16 33 H 0.15 4.81 8.14 -2.39 -0.02 4.79 16 34 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 35 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -79.42 346.27 1.33 -78.09 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.32 Total: 9.06 kcal Atomic # 6 Polarization: -29.61 SS G_CDS: 4.49 Total: -25.11 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -0.70 Total: -82.39 kcal Atomic # 8 Polarization: -111.11 SS G_CDS: -4.52 Total: -115.63 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 91.13 SS G_CDS: -0.29 Total: 90.84 kcal Total: -79.42 1.33 -78.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337264359.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.106 kcal (2) G-P(sol) polarization free energy of solvation -79.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds